Wall clock time and date at job start Wed Apr 1 2020 03:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.46668 * 2 1 4 4 C 1.50691 * 109.46979 * 239.99942 * 2 1 3 5 5 C 1.38651 * 120.79140 * 295.91959 * 4 2 1 6 6 C 1.38204 * 119.16248 * 179.75785 * 5 4 2 7 7 N 1.31872 * 120.76337 * 0.53237 * 6 5 4 8 8 C 1.31869 * 121.72571 * 359.74160 * 7 6 5 9 9 C 1.38207 * 120.76457 * 359.97438 * 8 7 6 10 10 N 1.46502 * 109.46986 * 119.99630 * 2 1 3 11 11 C 1.46506 * 119.99581 * 57.51325 * 10 2 1 12 12 C 1.34768 * 120.00180 * 237.51071 * 10 2 1 13 13 O 1.21351 * 120.00061 * 4.72437 * 12 10 2 14 14 C 1.49451 * 120.00323 * 184.72595 * 12 10 2 15 15 O 1.21345 * 120.00326 * 85.08286 * 14 12 10 16 16 N 1.34777 * 119.99616 * 265.09452 * 14 12 10 17 17 C 1.46920 * 120.63405 * 4.79742 * 16 14 12 18 18 C 1.53192 * 108.77500 * 126.37357 * 17 16 14 19 19 C 1.53036 * 109.31226 * 54.63953 * 18 17 16 20 20 C 1.53044 * 109.53626 * 298.62946 * 19 18 17 21 21 H 1.08998 * 109.49992 * 301.42093 * 20 19 18 22 22 C 1.50695 * 109.50025 * 181.35066 * 20 19 18 23 23 H 1.08007 * 119.99939 * 0.02562 * 22 20 19 24 24 C 1.37874 * 120.00449 * 180.02562 * 22 20 19 25 25 N 1.31515 * 120.00195 * 180.02562 * 24 22 20 26 26 Si 1.86801 * 119.99717 * 0.02562 * 24 22 20 27 27 H 1.48502 * 109.46903 * 89.99953 * 26 24 22 28 28 H 1.48499 * 109.47048 * 209.99587 * 26 24 22 29 29 H 1.48498 * 109.47087 * 330.00309 * 26 24 22 30 30 C 1.46927 * 120.62889 * 184.52562 * 16 14 12 31 31 H 1.09001 * 109.46817 * 59.99920 * 1 2 3 32 32 H 1.09000 * 109.47175 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47023 * 300.00208 * 1 2 3 34 34 H 1.07997 * 120.41980 * 0.02562 * 5 4 2 35 35 H 1.08000 * 119.61786 * 180.25365 * 6 5 4 36 36 H 1.08000 * 119.61327 * 179.97438 * 8 7 6 37 37 H 1.07991 * 120.41729 * 180.02562 * 9 8 7 38 38 H 1.09004 * 109.46646 * 206.58871 * 11 10 2 39 39 H 1.09000 * 109.46983 * 86.59361 * 11 10 2 40 40 H 1.08990 * 109.47321 * 326.58902 * 11 10 2 41 41 H 1.09009 * 109.58785 * 246.16026 * 17 16 14 42 42 H 1.09003 * 109.58837 * 6.58640 * 17 16 14 43 43 H 1.09009 * 109.49567 * 174.58772 * 18 17 16 44 44 H 1.08998 * 109.49467 * 294.68175 * 18 17 16 45 45 H 1.08994 * 109.46744 * 58.65279 * 19 18 17 46 46 H 1.09000 * 109.46194 * 178.61615 * 19 18 17 47 47 H 0.97004 * 119.99955 * 180.02562 * 25 24 22 48 48 H 1.09004 * 109.58507 * 353.41352 * 30 16 14 49 49 H 1.08994 * 109.59329 * 113.83929 * 30 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 6 1.7780 -2.0595 -1.4246 6 6 2.2503 -2.6761 -2.5677 7 7 2.9439 -1.9990 -3.4619 8 6 3.2093 -0.7165 -3.3075 9 6 2.7647 -0.0318 -2.1924 10 7 2.0183 -0.6905 1.1962 11 6 1.6199 -2.0763 1.4559 12 6 2.8340 -0.0511 2.0577 13 8 3.0953 1.1218 1.8889 14 6 3.4168 -0.7866 3.2209 15 8 4.4375 -1.4282 3.0834 16 7 2.8085 -0.7372 4.4226 17 6 1.5182 -0.0528 4.5810 18 6 0.5229 -1.0205 5.2288 19 6 1.1147 -1.5562 6.5345 20 6 2.4065 -2.3204 6.2355 21 1 2.1943 -3.1384 5.5471 22 6 2.9708 -2.8756 7.5177 23 1 2.4593 -2.7014 8.4529 24 6 4.1401 -3.6058 7.4972 25 7 4.6323 -4.0908 8.6162 26 14 5.0252 -3.9064 5.8798 27 1 5.9972 -2.8104 5.6364 28 1 5.7467 -5.2027 5.9439 29 1 4.0353 -3.9449 4.7736 30 6 3.4204 -1.3721 5.5979 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.2143 -2.6204 -0.6939 35 1 2.0530 -3.7257 -2.7284 36 1 3.7808 -0.1954 -4.0613 37 1 2.9849 1.0185 -2.0719 38 1 1.6533 -2.2689 2.5283 39 1 2.3039 -2.7530 0.9438 40 1 0.6064 -2.2378 1.0891 41 1 1.6446 0.8224 5.2184 42 1 1.1454 0.2550 3.6040 43 1 -0.4093 -0.4964 5.4398 44 1 0.3284 -1.8508 4.5498 45 1 1.3319 -0.7234 7.2034 46 1 0.3983 -2.2261 7.0100 47 1 5.4552 -4.6043 8.6017 48 1 4.3024 -1.9346 5.2917 49 1 3.7050 -0.6068 6.3200 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118503369.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:48:53 Heat of formation + Delta-G solvation = -41.567940 kcal Electronic energy + Delta-G solvation = -31689.861759 eV Core-core repulsion = 27616.523936 eV Total energy + Delta-G solvation = -4073.337823 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.38461 -41.28503 -40.14049 -38.66855 -37.76693 -35.41959 -34.27229 -33.71369 -32.36866 -32.22474 -31.20612 -28.47723 -27.81363 -26.99577 -25.59495 -24.42922 -24.28577 -23.64673 -22.01314 -21.03622 -20.10348 -19.10542 -18.86915 -18.48497 -17.94986 -17.70317 -17.02689 -16.70710 -16.65942 -16.09583 -16.02577 -15.81197 -15.50592 -15.23946 -14.99611 -14.89717 -14.71933 -14.58997 -14.43015 -14.24996 -14.18629 -13.85086 -13.51607 -13.41429 -13.21147 -13.01347 -12.98254 -12.81129 -12.50792 -12.37206 -12.15185 -12.12962 -11.83774 -11.60755 -11.27327 -11.07116 -10.89851 -10.82869 -10.62371 -10.57600 -10.14116 -10.03284 -9.85185 -8.39366 -6.41364 0.10565 0.15746 0.81374 0.91272 1.21908 1.29431 1.32201 1.38229 2.11947 2.20149 2.81792 2.96698 2.98406 3.36260 3.56476 3.72689 3.80961 3.92657 4.00227 4.02476 4.06685 4.10037 4.20898 4.23677 4.36427 4.38917 4.42106 4.53992 4.60216 4.64047 4.65966 4.70220 4.76903 4.81609 4.86243 4.92183 4.96736 5.02619 5.10903 5.19942 5.23642 5.26984 5.31075 5.51721 5.60329 5.65745 5.71538 5.75580 6.04784 6.25232 6.46366 6.59985 6.69801 6.98091 7.24317 8.76569 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015403 B = 0.003341 C = 0.003053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.438788 B = 8378.855516 C = 9170.521588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.173 3.827 3 H 0.105 0.895 4 C -0.064 4.064 5 C -0.165 4.165 6 C 0.087 3.913 7 N -0.512 5.512 8 C 0.088 3.912 9 C -0.166 4.166 10 N -0.580 5.580 11 C 0.055 3.945 12 C 0.530 3.470 13 O -0.536 6.536 14 C 0.501 3.499 15 O -0.565 6.565 16 N -0.585 5.585 17 C 0.101 3.899 18 C -0.121 4.121 19 C -0.099 4.099 20 C 0.008 3.992 21 H 0.026 0.974 22 C -0.508 4.508 23 H 0.054 0.946 24 C 0.030 3.970 25 N -0.937 5.937 26 Si 0.929 3.071 27 H -0.288 1.288 28 H -0.294 1.294 29 H -0.255 1.255 30 C 0.105 3.895 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.160 0.840 35 H 0.176 0.824 36 H 0.175 0.825 37 H 0.149 0.851 38 H 0.065 0.935 39 H 0.064 0.936 40 H 0.129 0.871 41 H 0.087 0.913 42 H 0.095 0.905 43 H 0.113 0.887 44 H 0.073 0.927 45 H 0.058 0.942 46 H 0.065 0.935 47 H 0.267 0.733 48 H 0.050 0.950 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.394 8.573 -22.186 28.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.072 3.928 3 H 0.123 0.877 4 C -0.073 4.073 5 C -0.184 4.184 6 C -0.069 4.069 7 N -0.222 5.222 8 C -0.068 4.068 9 C -0.186 4.186 10 N -0.313 5.313 11 C -0.086 4.086 12 C 0.313 3.687 13 O -0.413 6.413 14 C 0.284 3.716 15 O -0.444 6.444 16 N -0.318 5.318 17 C -0.020 4.020 18 C -0.159 4.159 19 C -0.137 4.137 20 C -0.012 4.012 21 H 0.044 0.956 22 C -0.547 4.547 23 H 0.072 0.928 24 C -0.169 4.169 25 N -0.577 5.577 26 Si 0.759 3.241 27 H -0.216 1.216 28 H -0.222 1.222 29 H -0.180 1.180 30 C -0.017 4.017 31 H 0.106 0.894 32 H 0.099 0.901 33 H 0.095 0.905 34 H 0.178 0.822 35 H 0.193 0.807 36 H 0.192 0.808 37 H 0.166 0.834 38 H 0.084 0.916 39 H 0.082 0.918 40 H 0.147 0.853 41 H 0.105 0.895 42 H 0.113 0.887 43 H 0.131 0.869 44 H 0.091 0.909 45 H 0.077 0.923 46 H 0.084 0.916 47 H 0.076 0.924 48 H 0.068 0.932 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -14.312 8.332 -23.001 28.342 hybrid contribution 1.391 -0.076 0.627 1.528 sum -12.921 8.256 -22.374 27.124 Atomic orbital electron populations 1.22141 0.89926 1.04458 1.04325 1.20252 0.97009 0.96355 0.79225 0.87735 1.20632 0.96136 0.95009 0.95532 1.22475 1.01655 0.94786 0.99505 1.23202 0.92883 1.01160 0.89686 1.67695 1.13455 1.09529 1.31484 1.23129 0.96663 0.90165 0.96861 1.22307 0.98479 1.02558 0.95278 1.47955 1.45660 1.15206 1.22491 1.22382 1.03560 0.80134 1.02562 1.19981 0.78527 0.86533 0.83691 1.90758 1.59798 1.15501 1.75246 1.20702 0.85100 0.80917 0.84904 1.90784 1.26432 1.42789 1.84352 1.48539 1.22719 1.52933 1.07567 1.22153 0.81084 0.95982 1.02777 1.21945 0.98304 0.99125 0.96534 1.21401 0.95630 0.99319 0.97340 1.19347 0.93833 0.93638 0.94363 0.95594 1.21300 1.07724 1.31501 0.94152 0.92826 1.25614 0.98086 0.95401 0.97816 1.69980 1.22203 1.37511 1.27999 0.86195 0.79685 0.76389 0.81857 1.21590 1.22173 1.17994 1.22297 0.97553 0.96780 0.85048 0.89398 0.90056 0.90506 0.82249 0.80672 0.80825 0.83365 0.91614 0.91788 0.85312 0.89523 0.88678 0.86912 0.90866 0.92346 0.91636 0.92399 0.93179 0.91218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 8.97 71.98 0.65 -0.64 16 2 C 0.17 2.73 2.98 44.24 0.13 2.86 16 3 H 0.10 1.93 6.71 -2.39 -0.02 1.92 16 4 C -0.06 -1.05 4.98 -19.67 -0.10 -1.15 16 5 C -0.16 -2.42 8.07 22.36 0.18 -2.24 16 6 C 0.09 1.45 11.18 84.68 0.95 2.40 16 7 N -0.51 -10.47 10.36 -195.84 -2.03 -12.49 16 8 C 0.09 1.54 11.18 84.68 0.95 2.49 16 9 C -0.17 -2.76 9.76 22.36 0.22 -2.55 16 10 N -0.58 -12.16 2.75 -828.39 -2.28 -14.44 16 11 C 0.06 0.94 8.17 127.77 1.04 1.99 16 12 C 0.53 15.99 5.47 87.27 0.48 16.47 16 13 O -0.54 -18.20 16.44 -3.25 -0.05 -18.25 16 14 C 0.50 18.67 5.64 87.27 0.49 19.17 16 15 O -0.56 -26.19 16.51 -3.23 -0.05 -26.24 16 16 N -0.59 -20.32 2.97 -821.31 -2.44 -22.76 16 17 C 0.10 2.42 6.33 86.36 0.55 2.97 16 18 C -0.12 -2.61 6.08 30.67 0.19 -2.43 16 19 C -0.10 -3.16 5.11 30.62 0.16 -3.00 16 20 C 0.01 0.33 1.83 -11.61 -0.02 0.31 16 21 H 0.03 1.15 7.20 -2.39 -0.02 1.13 16 22 C -0.51 -27.34 9.15 25.60 0.23 -27.10 16 23 H 0.05 3.11 7.99 -2.91 -0.02 3.09 16 24 C 0.03 1.71 5.45 84.65 0.46 2.17 16 25 N -0.94 -57.65 13.96 21.45 0.30 -57.35 16 26 Si 0.93 48.05 24.32 68.60 1.67 49.71 16 27 H -0.29 -15.49 6.93 99.48 0.69 -14.80 16 28 H -0.29 -15.02 7.11 99.48 0.71 -14.32 16 29 H -0.26 -12.68 6.53 99.48 0.65 -12.03 16 30 C 0.10 4.49 5.10 86.22 0.44 4.93 16 31 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.08 0.46 6.20 -2.39 -0.01 0.44 16 33 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.16 1.54 5.11 -2.91 -0.01 1.53 16 35 H 0.18 2.02 8.06 -2.91 -0.02 1.99 16 36 H 0.17 2.16 8.06 -2.91 -0.02 2.13 16 37 H 0.15 1.99 8.01 -2.92 -0.02 1.97 16 38 H 0.07 1.39 6.84 -2.38 -0.02 1.37 16 39 H 0.06 1.18 7.05 -2.39 -0.02 1.17 16 40 H 0.13 1.03 5.52 -2.39 -0.01 1.01 16 41 H 0.09 1.94 8.14 -2.38 -0.02 1.92 16 42 H 0.10 1.86 6.37 -2.39 -0.02 1.84 16 43 H 0.11 1.62 8.14 -2.38 -0.02 1.60 16 44 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 45 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 46 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 47 H 0.27 15.57 8.31 -92.70 -0.77 14.80 16 48 H 0.05 2.48 2.30 -2.39 -0.01 2.47 16 49 H 0.07 3.00 8.14 -2.39 -0.02 2.98 16 Total: -1.00 -79.45 382.16 3.00 -76.45 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: 0.90 Total: 8.73 kcal Atomic # 6 Polarization: 9.65 SS G_CDS: 6.99 Total: 16.63 kcal Atomic # 7 Polarization: -100.59 SS G_CDS: -6.45 Total: -107.04 kcal Atomic # 8 Polarization: -44.39 SS G_CDS: -0.11 Total: -44.49 kcal Atomic # 14 Polarization: 48.05 SS G_CDS: 1.67 Total: 49.71 kcal Total: -79.45 3.00 -76.45 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118503369.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.883 kcal (2) G-P(sol) polarization free energy of solvation -79.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds