Wall clock time and date at job start Wed Apr 1 2020 03:40:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47236 * 2 1 4 4 C 1.50693 * 109.47156 * 239.99742 * 2 1 3 5 5 C 1.38670 * 120.42226 * 295.51224 * 4 2 1 6 6 C 1.38630 * 118.42062 * 180.24036 * 5 4 2 7 7 C 1.38225 * 119.16295 * 359.75349 * 6 5 4 8 8 N 1.31855 * 120.76173 * 0.02562 * 7 6 5 9 9 C 1.31884 * 121.72804 * 359.97438 * 8 7 6 10 10 N 1.46498 * 109.46814 * 119.99902 * 2 1 3 11 11 C 1.46501 * 120.00406 * 54.22555 * 10 2 1 12 12 C 1.34784 * 119.99955 * 234.22267 * 10 2 1 13 13 O 1.21346 * 119.99771 * 355.63576 * 12 10 2 14 14 C 1.49449 * 119.99746 * 175.63298 * 12 10 2 15 15 O 1.21350 * 120.00079 * 84.54528 * 14 12 10 16 16 N 1.34775 * 120.00120 * 264.53890 * 14 12 10 17 17 C 1.46936 * 120.62802 * 4.48231 * 16 14 12 18 18 C 1.53624 * 108.54063 * 126.36573 * 17 16 14 19 19 C 1.53036 * 109.24234 * 54.85664 * 18 17 16 20 20 C 1.53037 * 109.53987 * 298.51011 * 19 18 17 21 21 H 1.09007 * 109.49633 * 301.41108 * 20 19 18 22 22 C 1.50703 * 109.52683 * 181.33706 * 20 19 18 23 23 H 1.08005 * 119.99842 * 0.13755 * 22 20 19 24 24 C 1.37882 * 119.99890 * 180.14694 * 22 20 19 25 25 N 1.31515 * 119.99549 * 179.97438 * 24 22 20 26 26 Si 1.86791 * 120.00015 * 359.97438 * 24 22 20 27 27 H 1.48502 * 109.47239 * 90.00345 * 26 24 22 28 28 H 1.48508 * 109.47161 * 210.00018 * 26 24 22 29 29 H 1.48496 * 109.47471 * 330.00186 * 26 24 22 30 30 C 1.46917 * 120.63283 * 184.75926 * 16 14 12 31 31 H 1.08998 * 109.47236 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47195 * 300.00180 * 1 2 3 33 33 H 1.09005 * 109.47124 * 60.00250 * 1 2 3 34 34 H 1.07997 * 120.78779 * 359.97346 * 5 4 2 35 35 H 1.08001 * 120.41975 * 179.77119 * 6 5 4 36 36 H 1.07997 * 119.61871 * 180.02562 * 7 6 5 37 37 H 1.07993 * 119.61923 * 179.97438 * 9 8 7 38 38 H 1.09003 * 109.47061 * 90.91505 * 11 10 2 39 39 H 1.08995 * 109.47627 * 210.91628 * 11 10 2 40 40 H 1.09005 * 109.46853 * 330.92054 * 11 10 2 41 41 H 1.09002 * 109.58585 * 246.19870 * 17 16 14 42 42 H 1.08995 * 109.58409 * 6.62561 * 17 16 14 43 43 H 1.08997 * 109.63368 * 294.86586 * 18 17 16 44 44 H 1.08999 * 109.43237 * 174.72482 * 18 17 16 45 45 H 1.09003 * 109.46158 * 178.48890 * 19 18 17 46 46 H 1.09000 * 109.44796 * 58.52163 * 19 18 17 47 47 H 0.96998 * 119.99781 * 179.97438 * 25 24 22 48 48 H 1.09002 * 109.58841 * 353.37676 * 30 16 14 49 49 H 1.08999 * 109.58828 * 113.80205 * 30 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 6 1.7808 -2.0619 -1.4127 6 6 2.2666 -2.6749 -2.5573 7 6 2.9761 -1.9228 -3.4747 8 7 3.1925 -0.6383 -3.2705 9 6 2.7454 -0.0223 -2.1934 10 7 2.0182 -0.6906 1.1962 11 6 1.5631 -2.0509 1.4938 12 6 2.8862 -0.0744 2.0230 13 8 3.3245 1.0202 1.7361 14 6 3.3089 -0.7394 3.2929 15 8 4.2214 -1.5392 3.2845 16 7 2.6766 -0.4506 4.4476 17 6 1.5081 0.4402 4.4587 18 6 0.3497 -0.2823 5.1630 19 6 0.8074 -0.7354 6.5512 20 6 1.9728 -1.7174 6.4108 21 1 1.6576 -2.5729 5.8133 22 6 2.4018 -2.1885 7.7764 23 1 1.8929 -1.8260 8.6573 24 6 3.4443 -3.0823 7.9013 25 7 3.8190 -3.4931 9.0931 26 14 4.3242 -3.7097 6.3777 27 1 5.4614 -2.8101 6.0571 28 1 4.8342 -5.0814 6.6301 29 1 3.3768 -3.7364 5.2346 30 6 3.1462 -1.0156 5.7198 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 1.2234 -2.6245 -0.6784 35 1 2.0927 -3.7267 -2.7301 36 1 3.3576 -2.3928 -4.3691 37 1 2.9428 1.0311 -2.0604 38 1 2.2455 -2.7698 1.0402 39 1 1.5438 -2.1997 2.5734 40 1 0.5614 -2.1956 1.0891 41 1 1.7521 1.3563 4.9968 42 1 1.2221 0.6806 3.4348 43 1 0.0499 -1.1512 4.5772 44 1 -0.4954 0.3989 5.2629 45 1 -0.0201 -1.2250 7.0647 46 1 1.1306 0.1315 7.1277 47 1 4.5521 -4.1221 9.1810 48 1 3.9414 -1.7362 5.5283 49 1 3.5211 -0.2159 6.3586 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118504096.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:40:44 Heat of formation + Delta-G solvation = -17.812292 kcal Electronic energy + Delta-G solvation = -31666.418555 eV Core-core repulsion = 27594.110855 eV Total energy + Delta-G solvation = -4072.307700 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.23329 -40.36694 -38.87197 -37.14856 -36.71605 -33.58510 -33.11938 -32.35942 -32.09505 -30.69395 -29.99909 -27.60608 -26.41471 -25.33595 -24.53980 -23.81839 -23.15228 -22.18518 -20.95784 -19.58231 -18.87559 -17.80185 -17.45548 -17.27956 -16.84628 -16.47060 -16.37933 -15.92561 -15.10797 -14.93686 -14.48034 -14.35461 -14.20458 -14.10079 -13.99626 -13.82573 -13.61009 -13.27366 -13.17631 -12.98831 -12.78856 -12.73741 -12.61538 -12.40354 -12.27925 -12.20106 -11.47910 -11.46842 -11.31096 -11.17020 -10.72739 -10.52225 -10.21330 -10.15946 -9.90827 -9.86430 -9.59990 -9.39466 -9.28159 -9.16377 -9.05697 -8.70045 -8.31735 -6.18177 -4.20413 0.71648 0.93992 2.06670 2.18535 2.69031 3.29837 3.31623 3.40489 3.47763 3.52471 4.03378 4.15684 4.32760 4.33960 4.44839 4.58851 4.60762 4.69482 4.81259 4.88899 4.95970 5.11123 5.12948 5.16136 5.16681 5.30591 5.36522 5.36997 5.42451 5.49925 5.66075 5.70194 5.75292 5.84794 5.85932 5.95822 6.00443 6.07166 6.25204 6.34791 6.37452 6.47038 6.59466 6.63602 6.81951 7.01598 7.28918 7.48717 7.60915 7.64209 7.64737 8.06241 8.40057 8.85172 9.42649 10.93726 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.016461 B = 0.003258 C = 0.003002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.582724 B = 8592.096299 C = 9326.006992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.179 3.821 3 H 0.114 0.886 4 C -0.148 4.148 5 C -0.067 4.067 6 C -0.172 4.172 7 C 0.098 3.902 8 N -0.484 5.484 9 C 0.115 3.885 10 N -0.596 5.596 11 C 0.065 3.935 12 C 0.524 3.476 13 O -0.513 6.513 14 C 0.506 3.494 15 O -0.518 6.518 16 N -0.587 5.587 17 C 0.108 3.892 18 C -0.133 4.133 19 C -0.102 4.102 20 C 0.007 3.993 21 H 0.032 0.968 22 C -0.517 4.517 23 H 0.079 0.921 24 C 0.074 3.926 25 N -0.893 5.893 26 Si 0.877 3.123 27 H -0.273 1.273 28 H -0.294 1.294 29 H -0.263 1.263 30 C 0.099 3.901 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.138 0.862 35 H 0.136 0.864 36 H 0.155 0.845 37 H 0.157 0.843 38 H 0.065 0.935 39 H 0.080 0.920 40 H 0.084 0.916 41 H 0.075 0.925 42 H 0.070 0.930 43 H 0.062 0.938 44 H 0.069 0.931 45 H 0.062 0.938 46 H 0.059 0.941 47 H 0.266 0.734 48 H 0.081 0.919 49 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.748 5.063 -21.618 24.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.076 3.924 3 H 0.132 0.868 4 C -0.151 4.151 5 C -0.094 4.094 6 C -0.192 4.192 7 C -0.059 4.059 8 N -0.192 5.192 9 C -0.043 4.043 10 N -0.332 5.332 11 C -0.078 4.078 12 C 0.307 3.693 13 O -0.386 6.386 14 C 0.288 3.712 15 O -0.393 6.393 16 N -0.321 5.321 17 C -0.015 4.015 18 C -0.171 4.171 19 C -0.139 4.139 20 C -0.012 4.012 21 H 0.050 0.950 22 C -0.555 4.555 23 H 0.097 0.903 24 C -0.129 4.129 25 N -0.530 5.530 26 Si 0.707 3.293 27 H -0.199 1.199 28 H -0.221 1.221 29 H -0.188 1.188 30 C -0.021 4.021 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.155 0.845 35 H 0.154 0.846 36 H 0.173 0.827 37 H 0.174 0.826 38 H 0.084 0.916 39 H 0.098 0.902 40 H 0.102 0.898 41 H 0.094 0.906 42 H 0.088 0.912 43 H 0.081 0.919 44 H 0.088 0.912 45 H 0.081 0.919 46 H 0.077 0.923 47 H 0.076 0.924 48 H 0.099 0.901 49 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -9.404 5.590 -22.257 24.800 hybrid contribution 0.269 -1.052 -0.128 1.093 sum -9.135 4.538 -22.385 24.600 Atomic orbital electron populations 1.22160 0.92969 1.03046 1.03375 1.19938 0.94632 0.97274 0.80561 0.86761 1.21122 1.00820 0.95492 0.97704 1.21688 0.96803 0.94089 0.96779 1.22169 1.00059 1.01603 0.95376 1.22821 0.94618 0.89822 0.98646 1.67732 1.19159 1.10972 1.21344 1.22716 0.92322 1.00353 0.88867 1.47939 1.44606 1.16702 1.23914 1.22098 1.00485 0.82182 1.03007 1.20603 0.78191 0.85390 0.85125 1.90762 1.53211 1.19614 1.75061 1.20078 0.84046 0.82551 0.84550 1.90817 1.29876 1.33143 1.85465 1.48524 1.29232 1.46864 1.07459 1.21879 0.85693 0.93146 1.00794 1.22054 0.96400 1.00060 0.98612 1.21463 0.99030 0.99550 0.93906 1.19486 0.91004 0.93874 0.96857 0.95030 1.20931 1.17467 1.25978 0.91165 0.90288 1.25050 0.96589 0.95582 0.95701 1.69881 1.28336 1.32484 1.22298 0.87023 0.80994 0.77952 0.83334 1.19943 1.22123 1.18808 1.22843 1.00220 0.98416 0.80574 0.91733 0.91055 0.90679 0.84463 0.84592 0.82724 0.82612 0.91638 0.90166 0.89792 0.90639 0.91191 0.91909 0.91245 0.91877 0.92257 0.92392 0.90147 0.90781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.01 8.92 37.16 0.33 -0.68 16 2 C 0.18 1.68 2.95 -69.09 -0.20 1.48 16 3 H 0.11 1.17 6.70 -51.93 -0.35 0.82 16 4 C -0.15 -1.43 4.97 -104.48 -0.52 -1.95 16 5 C -0.07 -0.58 8.29 -39.28 -0.33 -0.90 16 6 C -0.17 -1.37 10.11 -39.44 -0.40 -1.77 16 7 C 0.10 0.88 11.18 -17.55 -0.20 0.69 16 8 N -0.48 -5.42 10.36 -13.25 -0.14 -5.56 16 9 C 0.11 1.20 10.83 -17.55 -0.19 1.01 16 10 N -0.60 -7.11 2.75 -175.78 -0.48 -7.60 16 11 C 0.06 0.67 8.18 59.85 0.49 1.16 16 12 C 0.52 8.39 5.47 -11.58 -0.06 8.33 16 13 O -0.51 -9.14 16.45 5.50 0.09 -9.05 16 14 C 0.51 9.65 5.62 -11.59 -0.07 9.59 16 15 O -0.52 -11.82 16.51 5.50 0.09 -11.73 16 16 N -0.59 -10.66 2.97 -173.01 -0.51 -11.17 16 17 C 0.11 1.49 6.35 -3.48 -0.02 1.47 16 18 C -0.13 -1.74 6.10 -26.39 -0.16 -1.91 16 19 C -0.10 -1.75 5.11 -26.69 -0.14 -1.89 16 20 C 0.01 0.16 1.84 -91.65 -0.17 -0.01 16 21 H 0.03 0.72 7.20 -51.93 -0.37 0.34 16 22 C -0.52 -13.71 9.15 -34.44 -0.31 -14.02 16 23 H 0.08 2.24 7.99 -52.48 -0.42 1.82 16 24 C 0.07 2.08 5.45 -17.82 -0.10 1.98 16 25 N -0.89 -26.66 13.96 55.43 0.77 -25.89 16 26 Si 0.88 22.42 24.32 -169.99 -4.13 18.29 16 27 H -0.27 -7.14 6.92 56.52 0.39 -6.75 16 28 H -0.29 -7.50 7.11 56.52 0.40 -7.09 16 29 H -0.26 -6.55 6.53 56.52 0.37 -6.18 16 30 C 0.10 2.14 5.11 -3.71 -0.02 2.12 16 31 H 0.06 0.36 6.09 -51.93 -0.32 0.04 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.14 0.94 5.13 -52.49 -0.27 0.67 16 35 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 36 H 0.16 0.98 8.06 -52.49 -0.42 0.55 16 37 H 0.16 1.41 7.96 -52.49 -0.42 0.99 16 38 H 0.07 0.69 7.26 -51.93 -0.38 0.31 16 39 H 0.08 0.99 6.83 -51.93 -0.35 0.63 16 40 H 0.08 0.56 5.35 -51.93 -0.28 0.29 16 41 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.07 0.84 6.36 -51.93 -0.33 0.51 16 43 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 46 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 47 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 48 H 0.08 1.96 2.31 -51.93 -0.12 1.84 16 49 H 0.07 1.58 8.14 -51.93 -0.42 1.15 16 LS Contribution 382.24 15.07 5.76 5.76 Total: -1.00 -34.69 382.24 -7.62 -42.31 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -7.01 Total: -0.06 kcal Atomic # 6 Polarization: 6.75 SS G_CDS: -2.06 Total: 4.69 kcal Atomic # 7 Polarization: -49.85 SS G_CDS: -0.36 Total: -50.22 kcal Atomic # 8 Polarization: -20.96 SS G_CDS: 0.18 Total: -20.78 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -4.13 Total: 18.29 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.69 -7.62 -42.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118504096.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.498 kcal (2) G-P(sol) polarization free energy of solvation -34.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds