Wall clock time and date at job start Wed Apr 1 2020 03:40:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47236 * 2 1 4 4 C 1.50693 * 109.47156 * 239.99742 * 2 1 3 5 5 C 1.38670 * 120.42226 * 295.51224 * 4 2 1 6 6 C 1.38630 * 118.42062 * 180.24036 * 5 4 2 7 7 C 1.38225 * 119.16295 * 359.75349 * 6 5 4 8 8 N 1.31855 * 120.76173 * 0.02562 * 7 6 5 9 9 C 1.31884 * 121.72804 * 359.97438 * 8 7 6 10 10 N 1.46498 * 109.46814 * 119.99902 * 2 1 3 11 11 C 1.46501 * 120.00406 * 54.22555 * 10 2 1 12 12 C 1.34784 * 119.99955 * 234.22267 * 10 2 1 13 13 O 1.21346 * 119.99771 * 355.63576 * 12 10 2 14 14 C 1.49449 * 119.99746 * 175.63298 * 12 10 2 15 15 O 1.21350 * 120.00079 * 84.54528 * 14 12 10 16 16 N 1.34775 * 120.00120 * 264.53890 * 14 12 10 17 17 C 1.46936 * 120.62802 * 4.48231 * 16 14 12 18 18 C 1.53624 * 108.54063 * 126.36573 * 17 16 14 19 19 C 1.53036 * 109.24234 * 54.85664 * 18 17 16 20 20 C 1.53037 * 109.53987 * 298.51011 * 19 18 17 21 21 H 1.09007 * 109.49633 * 301.41108 * 20 19 18 22 22 C 1.50703 * 109.52683 * 181.33706 * 20 19 18 23 23 H 1.08005 * 119.99842 * 0.13755 * 22 20 19 24 24 C 1.37882 * 119.99890 * 180.14694 * 22 20 19 25 25 N 1.31515 * 119.99549 * 179.97438 * 24 22 20 26 26 Si 1.86791 * 120.00015 * 359.97438 * 24 22 20 27 27 H 1.48502 * 109.47239 * 90.00345 * 26 24 22 28 28 H 1.48508 * 109.47161 * 210.00018 * 26 24 22 29 29 H 1.48496 * 109.47471 * 330.00186 * 26 24 22 30 30 C 1.46917 * 120.63283 * 184.75926 * 16 14 12 31 31 H 1.08998 * 109.47236 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47195 * 300.00180 * 1 2 3 33 33 H 1.09005 * 109.47124 * 60.00250 * 1 2 3 34 34 H 1.07997 * 120.78779 * 359.97346 * 5 4 2 35 35 H 1.08001 * 120.41975 * 179.77119 * 6 5 4 36 36 H 1.07997 * 119.61871 * 180.02562 * 7 6 5 37 37 H 1.07993 * 119.61923 * 179.97438 * 9 8 7 38 38 H 1.09003 * 109.47061 * 90.91505 * 11 10 2 39 39 H 1.08995 * 109.47627 * 210.91628 * 11 10 2 40 40 H 1.09005 * 109.46853 * 330.92054 * 11 10 2 41 41 H 1.09002 * 109.58585 * 246.19870 * 17 16 14 42 42 H 1.08995 * 109.58409 * 6.62561 * 17 16 14 43 43 H 1.08997 * 109.63368 * 294.86586 * 18 17 16 44 44 H 1.08999 * 109.43237 * 174.72482 * 18 17 16 45 45 H 1.09003 * 109.46158 * 178.48890 * 19 18 17 46 46 H 1.09000 * 109.44796 * 58.52163 * 19 18 17 47 47 H 0.96998 * 119.99781 * 179.97438 * 25 24 22 48 48 H 1.09002 * 109.58841 * 353.37676 * 30 16 14 49 49 H 1.08999 * 109.58828 * 113.80205 * 30 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 6 1.7808 -2.0619 -1.4127 6 6 2.2666 -2.6749 -2.5573 7 6 2.9761 -1.9228 -3.4747 8 7 3.1925 -0.6383 -3.2705 9 6 2.7454 -0.0223 -2.1934 10 7 2.0182 -0.6906 1.1962 11 6 1.5631 -2.0509 1.4938 12 6 2.8862 -0.0744 2.0230 13 8 3.3245 1.0202 1.7361 14 6 3.3089 -0.7394 3.2929 15 8 4.2214 -1.5392 3.2845 16 7 2.6766 -0.4506 4.4476 17 6 1.5081 0.4402 4.4587 18 6 0.3497 -0.2823 5.1630 19 6 0.8074 -0.7354 6.5512 20 6 1.9728 -1.7174 6.4108 21 1 1.6576 -2.5729 5.8133 22 6 2.4018 -2.1885 7.7764 23 1 1.8929 -1.8260 8.6573 24 6 3.4443 -3.0823 7.9013 25 7 3.8190 -3.4931 9.0931 26 14 4.3242 -3.7097 6.3777 27 1 5.4614 -2.8101 6.0571 28 1 4.8342 -5.0814 6.6301 29 1 3.3768 -3.7364 5.2346 30 6 3.1462 -1.0156 5.7198 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 1.2234 -2.6245 -0.6784 35 1 2.0927 -3.7267 -2.7301 36 1 3.3576 -2.3928 -4.3691 37 1 2.9428 1.0311 -2.0604 38 1 2.2455 -2.7698 1.0402 39 1 1.5438 -2.1997 2.5734 40 1 0.5614 -2.1956 1.0891 41 1 1.7521 1.3563 4.9968 42 1 1.2221 0.6806 3.4348 43 1 0.0499 -1.1512 4.5772 44 1 -0.4954 0.3989 5.2629 45 1 -0.0201 -1.2250 7.0647 46 1 1.1306 0.1315 7.1277 47 1 4.5521 -4.1221 9.1810 48 1 3.9414 -1.7362 5.5283 49 1 3.5211 -0.2159 6.3586 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118504096.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:40:43 Heat of formation + Delta-G solvation = -41.893577 kcal Electronic energy + Delta-G solvation = -31667.462798 eV Core-core repulsion = 27594.110855 eV Total energy + Delta-G solvation = -4073.351943 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.35848 -41.28505 -40.11226 -38.63474 -37.72571 -35.39637 -34.02843 -33.68238 -33.00573 -32.31933 -30.63563 -28.51789 -27.80540 -26.98766 -25.47417 -24.52716 -24.23621 -23.64565 -21.96363 -21.00424 -20.05119 -19.09316 -18.86479 -18.40698 -18.11969 -17.80922 -17.15854 -16.90832 -16.48396 -16.08882 -15.94963 -15.60930 -15.47893 -15.23682 -14.97577 -14.83374 -14.67464 -14.55817 -14.46851 -14.19694 -14.11547 -13.83068 -13.42131 -13.26847 -13.20900 -13.18574 -12.98553 -12.79762 -12.69781 -12.36335 -12.14414 -12.02682 -11.83516 -11.60508 -11.27011 -11.07231 -10.90368 -10.83088 -10.72416 -10.57956 -10.03095 -9.99800 -9.84344 -8.38929 -6.40989 0.03002 0.28245 0.81371 0.92280 1.22584 1.30637 1.34246 1.38849 2.14163 2.20986 2.81184 2.97337 2.99011 3.39368 3.62924 3.80888 3.82705 3.94223 3.97093 3.97829 4.01587 4.06902 4.17916 4.31893 4.36822 4.39271 4.41717 4.53625 4.57195 4.64198 4.64551 4.75542 4.77312 4.78824 4.90171 4.92563 5.02612 5.07787 5.17957 5.20029 5.25304 5.26490 5.28006 5.51302 5.60531 5.65899 5.71780 5.78090 6.05693 6.25579 6.49223 6.60971 6.70057 6.96491 7.24637 8.77040 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.016461 B = 0.003258 C = 0.003002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.582724 B = 8592.096299 C = 9326.006992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.179 3.821 3 H 0.103 0.897 4 C -0.156 4.156 5 C -0.072 4.072 6 C -0.169 4.169 7 C 0.085 3.915 8 N -0.514 5.514 9 C 0.095 3.905 10 N -0.580 5.580 11 C 0.058 3.942 12 C 0.529 3.471 13 O -0.538 6.538 14 C 0.501 3.499 15 O -0.565 6.565 16 N -0.585 5.585 17 C 0.101 3.899 18 C -0.120 4.120 19 C -0.099 4.099 20 C 0.009 3.991 21 H 0.027 0.973 22 C -0.509 4.509 23 H 0.053 0.947 24 C 0.029 3.971 25 N -0.937 5.937 26 Si 0.930 3.070 27 H -0.289 1.289 28 H -0.294 1.294 29 H -0.255 1.255 30 C 0.105 3.895 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.087 0.913 34 H 0.158 0.842 35 H 0.165 0.835 36 H 0.177 0.823 37 H 0.158 0.842 38 H 0.064 0.936 39 H 0.062 0.938 40 H 0.128 0.872 41 H 0.086 0.914 42 H 0.095 0.905 43 H 0.072 0.928 44 H 0.111 0.889 45 H 0.065 0.935 46 H 0.057 0.943 47 H 0.267 0.733 48 H 0.051 0.949 49 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.729 5.272 -24.172 28.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.077 3.923 3 H 0.121 0.879 4 C -0.159 4.159 5 C -0.098 4.098 6 C -0.189 4.189 7 C -0.071 4.071 8 N -0.223 5.223 9 C -0.062 4.062 10 N -0.313 5.313 11 C -0.084 4.084 12 C 0.312 3.688 13 O -0.414 6.414 14 C 0.284 3.716 15 O -0.444 6.444 16 N -0.317 5.317 17 C -0.020 4.020 18 C -0.158 4.158 19 C -0.137 4.137 20 C -0.011 4.011 21 H 0.045 0.955 22 C -0.547 4.547 23 H 0.071 0.929 24 C -0.170 4.170 25 N -0.577 5.577 26 Si 0.760 3.240 27 H -0.216 1.216 28 H -0.221 1.221 29 H -0.179 1.179 30 C -0.017 4.017 31 H 0.098 0.902 32 H 0.096 0.904 33 H 0.106 0.894 34 H 0.176 0.824 35 H 0.183 0.817 36 H 0.194 0.806 37 H 0.175 0.825 38 H 0.082 0.918 39 H 0.080 0.920 40 H 0.146 0.854 41 H 0.104 0.896 42 H 0.113 0.887 43 H 0.091 0.909 44 H 0.130 0.870 45 H 0.083 0.917 46 H 0.076 0.924 47 H 0.076 0.924 48 H 0.069 0.931 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -12.460 5.809 -24.849 28.398 hybrid contribution 1.160 -1.102 0.638 1.722 sum -11.300 4.708 -24.211 27.130 Atomic orbital electron populations 1.22154 0.89968 1.04365 1.04362 1.20150 0.96722 0.96290 0.79128 0.87866 1.21140 1.01061 0.96161 0.97508 1.21995 0.96707 0.93691 0.97404 1.22509 0.98851 1.02885 0.94622 1.23295 0.94666 0.89367 0.99795 1.67716 1.20182 1.12319 1.22036 1.22861 0.93035 1.00843 0.89423 1.47991 1.42679 1.17089 1.23576 1.22323 1.02890 0.80992 1.02198 1.19998 0.79079 0.85110 0.84636 1.90761 1.54581 1.20643 1.75423 1.20697 0.83311 0.81890 0.85726 1.90780 1.31905 1.35398 1.86350 1.48523 1.30248 1.46884 1.06067 1.22236 0.84240 0.92756 1.02723 1.22000 0.97038 1.01285 0.95455 1.21404 0.97068 0.98241 0.96999 1.19422 0.92868 0.95005 0.93813 0.95533 1.21307 1.16012 1.24532 0.92878 0.92887 1.25629 0.97698 0.96428 0.97240 1.69983 1.29629 1.34158 1.23962 0.86175 0.79761 0.76886 0.81197 1.21604 1.22146 1.17897 1.22391 0.99168 0.97796 0.82345 0.90181 0.90401 0.89400 0.82425 0.81746 0.80635 0.82493 0.91775 0.91970 0.85357 0.89570 0.88713 0.90900 0.87025 0.91653 0.92378 0.92403 0.93106 0.91247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 8.92 71.98 0.64 -0.64 16 2 C 0.18 2.87 2.95 44.24 0.13 3.00 16 3 H 0.10 1.93 6.70 -2.39 -0.02 1.91 16 4 C -0.16 -2.66 4.97 -19.77 -0.10 -2.75 16 5 C -0.07 -1.00 8.29 22.47 0.19 -0.81 16 6 C -0.17 -2.18 10.11 22.36 0.23 -1.95 16 7 C 0.09 1.38 11.18 84.69 0.95 2.32 16 8 N -0.51 -11.06 10.36 -195.85 -2.03 -13.09 16 9 C 0.10 1.91 10.83 84.67 0.92 2.83 16 10 N -0.58 -12.30 2.75 -828.39 -2.28 -14.58 16 11 C 0.06 0.99 8.18 127.77 1.04 2.04 16 12 C 0.53 16.19 5.47 87.27 0.48 16.67 16 13 O -0.54 -18.67 16.45 -3.23 -0.05 -18.72 16 14 C 0.50 18.75 5.62 87.27 0.49 19.24 16 15 O -0.57 -26.12 16.51 -3.25 -0.05 -26.17 16 16 N -0.58 -20.46 2.97 -819.64 -2.43 -22.90 16 17 C 0.10 2.47 6.35 86.51 0.55 3.02 16 18 C -0.12 -2.63 6.10 30.82 0.19 -2.44 16 19 C -0.10 -3.19 5.11 30.62 0.16 -3.03 16 20 C 0.01 0.36 1.84 -11.46 -0.02 0.34 16 21 H 0.03 1.18 7.20 -2.38 -0.02 1.16 16 22 C -0.51 -27.40 9.15 25.60 0.23 -27.17 16 23 H 0.05 3.08 7.99 -2.91 -0.02 3.06 16 24 C 0.03 1.66 5.45 84.66 0.46 2.12 16 25 N -0.94 -57.67 13.96 21.45 0.30 -57.37 16 26 Si 0.93 47.90 24.32 68.60 1.67 49.57 16 27 H -0.29 -15.45 6.92 99.48 0.69 -14.76 16 28 H -0.29 -14.92 7.11 99.48 0.71 -14.21 16 29 H -0.25 -12.54 6.53 99.48 0.65 -11.89 16 30 C 0.10 4.49 5.11 86.37 0.44 4.93 16 31 H 0.08 0.45 6.09 -2.39 -0.01 0.43 16 32 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.09 0.59 8.14 -2.38 -0.02 0.57 16 34 H 0.16 1.43 5.13 -2.91 -0.01 1.42 16 35 H 0.16 1.11 8.06 -2.91 -0.02 1.08 16 36 H 0.18 1.85 8.06 -2.91 -0.02 1.83 16 37 H 0.16 2.85 7.96 -2.91 -0.02 2.83 16 38 H 0.06 1.17 7.26 -2.39 -0.02 1.15 16 39 H 0.06 1.36 6.83 -2.39 -0.02 1.34 16 40 H 0.13 1.04 5.35 -2.38 -0.01 1.03 16 41 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 42 H 0.09 1.90 6.36 -2.39 -0.02 1.88 16 43 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 44 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 45 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 46 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 47 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 48 H 0.05 2.52 2.31 -2.39 -0.01 2.51 16 49 H 0.07 2.99 8.14 -2.39 -0.02 2.97 16 Total: -1.00 -79.87 382.24 2.99 -76.88 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: 0.90 Total: 8.66 kcal Atomic # 6 Polarization: 10.75 SS G_CDS: 6.97 Total: 17.73 kcal Atomic # 7 Polarization: -101.49 SS G_CDS: -6.44 Total: -107.93 kcal Atomic # 8 Polarization: -44.79 SS G_CDS: -0.11 Total: -44.90 kcal Atomic # 14 Polarization: 47.90 SS G_CDS: 1.67 Total: 49.57 kcal Total: -79.87 2.99 -76.88 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118504096.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.986 kcal (2) G-P(sol) polarization free energy of solvation -79.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds