Wall clock time and date at job start Wed Apr 1 2020 03:18:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.23378 * 2 1 4 4 C 1.48966 * 109.23139 * 119.39244 * 2 1 3 5 5 O 1.21292 * 116.71635 * 265.85873 * 4 2 1 6 6 N 1.30164 * 126.57795 * 85.98379 * 4 2 1 7 7 C 1.37452 * 136.76927 * 19.52812 * 6 4 2 8 8 C 1.40604 * 115.05724 * 164.31322 * 7 6 4 9 9 C 1.37318 * 121.44471 * 180.24111 * 8 7 6 10 10 C 1.38326 * 119.68433 * 359.97438 * 9 8 7 11 11 C 1.37653 * 119.39365 * 359.94486 * 10 9 8 12 12 C 1.37954 * 126.43844 * 344.46095 * 7 6 4 13 13 C 1.49703 * 124.49409 * 359.65456 * 12 7 6 14 14 N 1.43861 * 114.68305 * 34.40299 * 13 12 7 15 15 C 1.34776 * 118.28898 * 104.53198 * 14 13 12 16 16 O 1.21282 * 120.00213 * 179.97438 * 15 14 13 17 17 C 1.50708 * 119.99592 * 0.02562 * 15 14 13 18 18 H 1.08994 * 109.46974 * 319.99284 * 17 15 14 19 19 N 1.46903 * 109.46584 * 199.99525 * 17 15 14 20 20 C 1.53003 * 109.47059 * 79.99440 * 17 15 14 21 21 C 1.52994 * 109.46838 * 184.99479 * 20 17 15 22 22 C 1.52996 * 109.47119 * 180.02562 * 21 20 17 23 23 C 1.50702 * 109.47159 * 180.02562 * 22 21 20 24 24 H 1.08002 * 120.00299 * 0.02562 * 23 22 21 25 25 C 1.37884 * 119.99942 * 179.72211 * 23 22 21 26 26 N 1.31514 * 119.99698 * 0.28408 * 25 23 22 27 27 Si 1.86794 * 119.99837 * 180.27476 * 25 23 22 28 28 H 1.48504 * 109.47196 * 60.00645 * 27 25 23 29 29 H 1.48504 * 109.46887 * 180.02562 * 27 25 23 30 30 H 1.48502 * 109.47679 * 300.00280 * 27 25 23 31 31 H 1.08997 * 109.47240 * 179.63857 * 1 2 3 32 32 H 1.09003 * 109.46770 * 299.63524 * 1 2 3 33 33 H 1.09004 * 109.47587 * 59.63140 * 1 2 3 34 34 H 0.97005 * 111.61714 * 199.54925 * 6 4 2 35 35 H 1.08001 * 119.27325 * 0.23536 * 8 7 6 36 36 H 1.08007 * 120.15760 * 180.02562 * 9 8 7 37 37 H 1.08004 * 120.30542 * 179.97438 * 10 9 8 38 38 H 1.08004 * 119.31642 * 180.02562 * 11 10 9 39 39 H 1.08998 * 108.43813 * 273.05638 * 13 12 7 40 40 H 1.08999 * 108.43877 * 155.75388 * 13 12 7 41 41 H 1.00895 * 111.00271 * 299.99704 * 19 17 15 42 42 H 1.00899 * 111.00243 * 63.95568 * 19 17 15 43 43 H 1.08998 * 109.46943 * 65.00353 * 20 17 15 44 44 H 1.08994 * 109.47116 * 304.99964 * 20 17 15 45 45 H 1.09004 * 109.46806 * 60.00265 * 21 20 17 46 46 H 1.09000 * 109.47828 * 300.00570 * 21 20 17 47 47 H 1.09004 * 109.47066 * 60.00422 * 22 21 20 48 48 H 1.08994 * 109.47405 * 300.00252 * 22 21 20 49 49 H 0.97005 * 119.99651 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8891 1.0291 0.0000 4 6 2.0207 -0.6903 1.2255 5 8 2.2742 0.0112 2.1820 6 7 2.2070 -1.9701 1.3729 7 6 2.3772 -3.0586 0.5509 8 6 2.8865 -4.2073 1.1817 9 6 3.1122 -5.3677 0.4830 10 6 2.8349 -5.4168 -0.8712 11 6 2.3344 -4.2989 -1.4994 12 6 2.1017 -3.1165 -0.7996 13 6 1.5538 -1.9781 -1.6027 14 7 2.0112 -0.6777 -1.1914 15 6 2.9389 -0.0582 -1.9477 16 8 3.3462 1.0392 -1.6300 17 6 3.4693 -0.7285 -3.1889 18 1 3.6107 -1.7918 -2.9953 19 7 4.7552 -0.1233 -3.5607 20 6 2.4701 -0.5469 -4.3332 21 6 2.9479 -1.3313 -5.5568 22 6 1.9491 -1.1492 -6.7013 23 6 2.4195 -1.9224 -7.9063 24 1 3.3386 -2.4876 -7.8603 25 6 1.6731 -1.9134 -9.0656 26 7 0.5536 -1.2255 -9.1216 27 14 2.2522 -2.8780 -10.5567 28 1 2.3531 -4.3176 -10.2064 29 1 1.2802 -2.7051 -11.6661 30 1 3.5837 -2.3779 -10.9834 31 1 -0.3633 -1.0276 -0.0065 32 1 -0.3633 0.5082 0.8933 33 1 -0.3634 0.5196 -0.8867 34 1 2.2323 -2.2221 2.3093 35 1 3.1049 -4.1763 2.2389 36 1 3.5036 -6.2381 0.9887 37 1 3.0090 -6.3242 -1.4306 38 1 2.1180 -4.3388 -2.5568 39 1 0.4663 -1.9990 -1.5330 40 1 1.8315 -2.1272 -2.6462 41 1 4.6506 0.8631 -3.7454 42 1 5.4509 -0.2860 -2.8484 43 1 2.3957 0.5107 -4.5861 44 1 1.4924 -0.9161 -4.0239 45 1 3.0224 -2.3890 -5.3038 46 1 3.9257 -0.9621 -5.8661 47 1 1.8751 -0.0915 -6.9541 48 1 0.9712 -1.5182 -6.3923 49 1 0.0287 -1.2188 -9.9373 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119363999.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:18:25 Heat of formation + Delta-G solvation = -36.606603 kcal Electronic energy + Delta-G solvation = -31143.116617 eV Core-core repulsion = 27069.993934 eV Total energy + Delta-G solvation = -4073.122683 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.97697 -40.12578 -39.41815 -36.66626 -35.96783 -35.59956 -33.46316 -32.73473 -31.40591 -31.27057 -30.04563 -28.02370 -26.85830 -25.78057 -24.83435 -23.33709 -22.82591 -21.77547 -20.35455 -20.09155 -19.67444 -18.24067 -17.90692 -17.07136 -16.65216 -16.40648 -16.06947 -15.82103 -15.74452 -15.55743 -15.13397 -14.53222 -14.48301 -14.26409 -14.14756 -13.88504 -13.59124 -13.42770 -13.04961 -12.89523 -12.72910 -12.50270 -12.34753 -12.19964 -11.82889 -11.76078 -11.65406 -11.45090 -11.20874 -11.14443 -10.76174 -10.71227 -10.63715 -10.46433 -10.28587 -9.66011 -9.28042 -9.24257 -9.15071 -9.08982 -8.65151 -8.40715 -8.32136 -5.98000 -3.99783 0.74725 0.90848 2.06750 2.29388 2.61223 2.71421 3.34435 3.38415 3.39019 3.41616 3.95929 4.25188 4.28333 4.36316 4.47639 4.50192 4.57392 4.66287 4.80037 4.86550 4.94060 5.06029 5.08767 5.15001 5.19580 5.28658 5.37969 5.38387 5.45428 5.52681 5.61048 5.68156 5.81246 5.98675 6.02605 6.09448 6.17334 6.20110 6.34983 6.45037 6.74814 6.85806 6.94944 7.07447 7.11612 7.19180 7.44433 7.48272 7.70978 7.84229 7.86013 8.03009 8.46097 9.07608 9.64176 11.13315 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012320 B = 0.002925 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2272.215874 B = 9571.258166 C =10754.125271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.120 3.880 3 H 0.140 0.860 4 C 0.524 3.476 5 O -0.532 6.532 6 N -0.649 5.649 7 C 0.181 3.819 8 C -0.165 4.165 9 C -0.083 4.083 10 C -0.137 4.137 11 C -0.078 4.078 12 C -0.138 4.138 13 C 0.133 3.867 14 N -0.599 5.599 15 C 0.483 3.517 16 O -0.536 6.536 17 C 0.077 3.923 18 H 0.104 0.896 19 N -0.809 5.809 20 C -0.108 4.108 21 C -0.100 4.100 22 C 0.020 3.980 23 C -0.518 4.518 24 H 0.055 0.945 25 C 0.056 3.944 26 N -0.897 5.897 27 Si 0.890 3.110 28 H -0.277 1.277 29 H -0.288 1.288 30 H -0.277 1.277 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.396 0.604 35 H 0.125 0.875 36 H 0.129 0.871 37 H 0.131 0.869 38 H 0.136 0.864 39 H 0.091 0.909 40 H 0.117 0.883 41 H 0.351 0.649 42 H 0.339 0.661 43 H 0.066 0.934 44 H 0.065 0.935 45 H 0.045 0.955 46 H 0.064 0.936 47 H 0.014 0.986 48 H 0.012 0.988 49 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.951 -6.881 22.696 23.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.012 3.988 3 H 0.158 0.842 4 C 0.311 3.689 5 O -0.407 6.407 6 N -0.287 5.287 7 C 0.085 3.915 8 C -0.186 4.186 9 C -0.102 4.102 10 C -0.156 4.156 11 C -0.097 4.097 12 C -0.142 4.142 13 C 0.010 3.990 14 N -0.333 5.333 15 C 0.270 3.730 16 O -0.411 6.411 17 C -0.039 4.039 18 H 0.121 0.879 19 N -0.337 5.337 20 C -0.146 4.146 21 C -0.137 4.137 22 C -0.017 4.017 23 C -0.556 4.556 24 H 0.073 0.927 25 C -0.145 4.145 26 N -0.537 5.537 27 Si 0.718 3.282 28 H -0.203 1.203 29 H -0.214 1.214 30 H -0.202 1.202 31 H 0.085 0.915 32 H 0.097 0.903 33 H 0.101 0.899 34 H 0.230 0.770 35 H 0.143 0.857 36 H 0.147 0.853 37 H 0.149 0.851 38 H 0.154 0.846 39 H 0.108 0.892 40 H 0.135 0.865 41 H 0.165 0.835 42 H 0.151 0.849 43 H 0.084 0.916 44 H 0.083 0.917 45 H 0.064 0.936 46 H 0.083 0.917 47 H 0.032 0.968 48 H 0.031 0.969 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.115 -6.138 22.316 23.172 hybrid contribution 0.013 -0.218 0.506 0.551 sum 1.129 -6.356 22.822 23.718 Atomic orbital electron populations 1.22083 0.91579 1.03448 1.04455 1.20934 0.96877 0.99380 0.81560 0.84203 1.19658 0.76721 0.81326 0.91210 1.90846 1.48639 1.60708 1.40555 1.42069 1.68712 1.06010 1.11899 1.16983 0.98080 0.86053 0.90427 1.21183 1.04115 0.92831 1.00440 1.20873 0.97796 0.97040 0.94498 1.21081 1.00804 0.98896 0.94801 1.21218 0.96576 0.91428 1.00454 1.19650 1.05381 0.97230 0.91973 1.19974 1.00236 0.79429 0.99394 1.47100 1.42676 1.18160 1.25394 1.22932 0.77706 0.86331 0.85986 1.90683 1.57947 1.20415 1.72090 1.21869 0.92019 0.99404 0.90591 0.87864 1.59046 1.05960 1.21035 1.47700 1.21754 0.95805 1.02540 0.94467 1.21548 1.01105 0.97490 0.93581 1.19110 0.93717 0.97022 0.91824 1.21232 1.07553 1.29735 0.97099 0.92699 1.25022 0.95005 0.95683 0.98770 1.69955 1.14376 1.41557 1.27780 0.86687 0.78501 0.80517 0.82455 1.20278 1.21399 1.20241 0.91550 0.90314 0.89862 0.77020 0.85725 0.85309 0.85092 0.84571 0.89157 0.86528 0.83465 0.84930 0.91576 0.91693 0.93628 0.91698 0.96773 0.96943 0.93035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.34 8.84 37.16 0.33 -1.01 16 2 C 0.12 1.35 2.89 -70.57 -0.20 1.15 16 3 H 0.14 1.87 6.73 -51.93 -0.35 1.52 16 4 C 0.52 6.22 6.87 -13.81 -0.09 6.12 16 5 O -0.53 -7.90 17.51 5.55 0.10 -7.81 16 6 N -0.65 -6.20 4.74 -11.79 -0.06 -6.26 16 7 C 0.18 1.62 6.69 -84.56 -0.57 1.05 16 8 C -0.17 -1.20 9.52 -39.02 -0.37 -1.58 16 9 C -0.08 -0.55 10.03 -39.88 -0.40 -0.95 16 10 C -0.14 -0.98 10.06 -39.76 -0.40 -1.38 16 11 C -0.08 -0.63 9.42 -39.38 -0.37 -1.00 16 12 C -0.14 -1.24 5.81 -104.79 -0.61 -1.85 16 13 C 0.13 1.25 4.71 -7.07 -0.03 1.21 16 14 N -0.60 -6.75 2.47 -173.32 -0.43 -7.18 16 15 C 0.48 6.57 6.85 -10.98 -0.08 6.49 16 16 O -0.54 -8.84 15.42 5.56 0.09 -8.76 16 17 C 0.08 1.01 2.28 -68.86 -0.16 0.85 16 18 H 0.10 1.23 6.87 -51.93 -0.36 0.88 16 19 N -0.81 -10.84 8.44 -5.65 -0.05 -10.89 16 20 C -0.11 -1.64 4.43 -26.73 -0.12 -1.76 16 21 C -0.10 -1.89 5.04 -26.74 -0.13 -2.03 16 22 C 0.02 0.50 4.97 -27.88 -0.14 0.36 16 23 C -0.52 -14.31 9.11 -34.44 -0.31 -14.62 16 24 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 25 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 26 N -0.90 -26.57 13.29 55.43 0.74 -25.84 16 27 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 28 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 29 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 30 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 31 H 0.07 0.50 6.95 -51.93 -0.36 0.14 16 32 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.40 3.18 7.55 -40.82 -0.31 2.87 16 35 H 0.12 0.67 7.75 -52.49 -0.41 0.26 16 36 H 0.13 0.57 8.06 -52.48 -0.42 0.15 16 37 H 0.13 0.72 8.06 -52.48 -0.42 0.30 16 38 H 0.14 0.99 7.82 -52.48 -0.41 0.57 16 39 H 0.09 0.73 6.60 -51.93 -0.34 0.39 16 40 H 0.12 1.11 3.75 -51.93 -0.19 0.92 16 41 H 0.35 4.87 8.58 -39.29 -0.34 4.54 16 42 H 0.34 4.08 9.06 -39.29 -0.36 3.72 16 43 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 44 H 0.06 0.91 6.67 -51.93 -0.35 0.56 16 45 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.06 1.30 7.75 -51.93 -0.40 0.90 16 47 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 48 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 49 H 0.26 7.30 8.31 -40.82 -0.34 6.97 16 LS Contribution 392.80 15.07 5.92 5.92 Total: -1.00 -33.92 392.80 -9.57 -43.48 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: -7.10 Total: 8.45 kcal Atomic # 6 Polarization: -3.70 SS G_CDS: -3.76 Total: -7.46 kcal Atomic # 7 Polarization: -50.36 SS G_CDS: 0.21 Total: -50.15 kcal Atomic # 8 Polarization: -16.75 SS G_CDS: 0.18 Total: -16.56 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.92 -9.57 -43.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119363999.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.874 kcal (2) G-P(sol) polarization free energy of solvation -33.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds