Wall clock time and date at job start Wed Apr 1 2020 03:18:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.23378 * 2 1 4 4 C 1.48966 * 109.23139 * 119.39244 * 2 1 3 5 5 O 1.21292 * 116.71635 * 265.85873 * 4 2 1 6 6 N 1.30164 * 126.57795 * 85.98379 * 4 2 1 7 7 C 1.37452 * 136.76927 * 19.52812 * 6 4 2 8 8 C 1.40604 * 115.05724 * 164.31322 * 7 6 4 9 9 C 1.37318 * 121.44471 * 180.24111 * 8 7 6 10 10 C 1.38326 * 119.68433 * 359.97438 * 9 8 7 11 11 C 1.37653 * 119.39365 * 359.94486 * 10 9 8 12 12 C 1.37954 * 126.43844 * 344.46095 * 7 6 4 13 13 C 1.49703 * 124.49409 * 359.65456 * 12 7 6 14 14 N 1.43861 * 114.68305 * 34.40299 * 13 12 7 15 15 C 1.34776 * 118.28898 * 104.53198 * 14 13 12 16 16 O 1.21282 * 120.00213 * 179.97438 * 15 14 13 17 17 C 1.50708 * 119.99592 * 0.02562 * 15 14 13 18 18 H 1.08994 * 109.46974 * 319.99284 * 17 15 14 19 19 N 1.46903 * 109.46584 * 199.99525 * 17 15 14 20 20 C 1.53003 * 109.47059 * 79.99440 * 17 15 14 21 21 C 1.52994 * 109.46838 * 184.99479 * 20 17 15 22 22 C 1.52996 * 109.47119 * 180.02562 * 21 20 17 23 23 C 1.50702 * 109.47159 * 180.02562 * 22 21 20 24 24 H 1.08002 * 120.00299 * 0.02562 * 23 22 21 25 25 C 1.37884 * 119.99942 * 179.72211 * 23 22 21 26 26 N 1.31514 * 119.99698 * 0.28408 * 25 23 22 27 27 Si 1.86794 * 119.99837 * 180.27476 * 25 23 22 28 28 H 1.48504 * 109.47196 * 60.00645 * 27 25 23 29 29 H 1.48504 * 109.46887 * 180.02562 * 27 25 23 30 30 H 1.48502 * 109.47679 * 300.00280 * 27 25 23 31 31 H 1.08997 * 109.47240 * 179.63857 * 1 2 3 32 32 H 1.09003 * 109.46770 * 299.63524 * 1 2 3 33 33 H 1.09004 * 109.47587 * 59.63140 * 1 2 3 34 34 H 0.97005 * 111.61714 * 199.54925 * 6 4 2 35 35 H 1.08001 * 119.27325 * 0.23536 * 8 7 6 36 36 H 1.08007 * 120.15760 * 180.02562 * 9 8 7 37 37 H 1.08004 * 120.30542 * 179.97438 * 10 9 8 38 38 H 1.08004 * 119.31642 * 180.02562 * 11 10 9 39 39 H 1.08998 * 108.43813 * 273.05638 * 13 12 7 40 40 H 1.08999 * 108.43877 * 155.75388 * 13 12 7 41 41 H 1.00895 * 111.00271 * 299.99704 * 19 17 15 42 42 H 1.00899 * 111.00243 * 63.95568 * 19 17 15 43 43 H 1.08998 * 109.46943 * 65.00353 * 20 17 15 44 44 H 1.08994 * 109.47116 * 304.99964 * 20 17 15 45 45 H 1.09004 * 109.46806 * 60.00265 * 21 20 17 46 46 H 1.09000 * 109.47828 * 300.00570 * 21 20 17 47 47 H 1.09004 * 109.47066 * 60.00422 * 22 21 20 48 48 H 1.08994 * 109.47405 * 300.00252 * 22 21 20 49 49 H 0.97005 * 119.99651 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8891 1.0291 0.0000 4 6 2.0207 -0.6903 1.2255 5 8 2.2742 0.0112 2.1820 6 7 2.2070 -1.9701 1.3729 7 6 2.3772 -3.0586 0.5509 8 6 2.8865 -4.2073 1.1817 9 6 3.1122 -5.3677 0.4830 10 6 2.8349 -5.4168 -0.8712 11 6 2.3344 -4.2989 -1.4994 12 6 2.1017 -3.1165 -0.7996 13 6 1.5538 -1.9781 -1.6027 14 7 2.0112 -0.6777 -1.1914 15 6 2.9389 -0.0582 -1.9477 16 8 3.3462 1.0392 -1.6300 17 6 3.4693 -0.7285 -3.1889 18 1 3.6107 -1.7918 -2.9953 19 7 4.7552 -0.1233 -3.5607 20 6 2.4701 -0.5469 -4.3332 21 6 2.9479 -1.3313 -5.5568 22 6 1.9491 -1.1492 -6.7013 23 6 2.4195 -1.9224 -7.9063 24 1 3.3386 -2.4876 -7.8603 25 6 1.6731 -1.9134 -9.0656 26 7 0.5536 -1.2255 -9.1216 27 14 2.2522 -2.8780 -10.5567 28 1 2.3531 -4.3176 -10.2064 29 1 1.2802 -2.7051 -11.6661 30 1 3.5837 -2.3779 -10.9834 31 1 -0.3633 -1.0276 -0.0065 32 1 -0.3633 0.5082 0.8933 33 1 -0.3634 0.5196 -0.8867 34 1 2.2323 -2.2221 2.3093 35 1 3.1049 -4.1763 2.2389 36 1 3.5036 -6.2381 0.9887 37 1 3.0090 -6.3242 -1.4306 38 1 2.1180 -4.3388 -2.5568 39 1 0.4663 -1.9990 -1.5330 40 1 1.8315 -2.1272 -2.6462 41 1 4.6506 0.8631 -3.7454 42 1 5.4509 -0.2860 -2.8484 43 1 2.3957 0.5107 -4.5861 44 1 1.4924 -0.9161 -4.0239 45 1 3.0224 -2.3890 -5.3038 46 1 3.9257 -0.9621 -5.8661 47 1 1.8751 -0.0915 -6.9541 48 1 0.9712 -1.5182 -6.3923 49 1 0.0287 -1.2188 -9.9373 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119363999.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:18:24 Heat of formation + Delta-G solvation = -59.537989 kcal Electronic energy + Delta-G solvation = -31144.110996 eV Core-core repulsion = 27069.993934 eV Total energy + Delta-G solvation = -4074.117062 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.84510 -41.13831 -40.12659 -37.63508 -37.28155 -36.37034 -35.28582 -33.54611 -33.09281 -32.04386 -30.71093 -29.56539 -27.59906 -27.05757 -25.95132 -24.45467 -23.76066 -22.77421 -21.69304 -21.11718 -20.67377 -19.01336 -18.90106 -18.39034 -17.94597 -17.47018 -17.11754 -16.84889 -16.62438 -16.42555 -16.38064 -15.92725 -15.51524 -15.30751 -15.13959 -14.64957 -14.64099 -14.32964 -14.26861 -14.04754 -13.77588 -13.57248 -13.43553 -13.28803 -12.96906 -12.86633 -12.78982 -12.55960 -12.45762 -12.39000 -12.21537 -12.13842 -11.88281 -11.54777 -11.51129 -11.35102 -11.19634 -10.96457 -10.46930 -10.12248 -9.83010 -9.73832 -9.07913 -8.12984 -6.22634 0.06303 0.34212 1.18069 1.28738 1.44816 1.47379 1.54911 1.72840 1.88539 2.46796 2.79536 3.10885 3.20632 3.29209 3.53295 3.62752 3.69290 3.75254 3.90080 3.95021 3.96980 4.08797 4.28375 4.40206 4.46077 4.47753 4.51499 4.56443 4.61627 4.67639 4.77476 4.92248 4.97023 5.00020 5.03009 5.15069 5.18849 5.29472 5.38925 5.45037 5.50867 5.62167 5.65350 5.86700 5.88977 5.90877 5.98830 6.08186 6.30176 6.34323 6.39199 6.63537 6.80944 6.95363 7.46305 8.98388 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012320 B = 0.002925 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2272.215874 B = 9571.258166 C =10754.125271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.117 3.883 3 H 0.115 0.885 4 C 0.526 3.474 5 O -0.571 6.571 6 N -0.639 5.639 7 C 0.158 3.842 8 C -0.164 4.164 9 C -0.083 4.083 10 C -0.136 4.136 11 C -0.088 4.088 12 C -0.145 4.145 13 C 0.127 3.873 14 N -0.590 5.590 15 C 0.482 3.518 16 O -0.570 6.570 17 C 0.089 3.911 18 H 0.122 0.878 19 N -0.814 5.814 20 C -0.097 4.097 21 C -0.083 4.083 22 C 0.023 3.977 23 C -0.538 4.538 24 H 0.060 0.940 25 C -0.001 4.001 26 N -0.935 5.935 27 Si 0.959 3.041 28 H -0.263 1.263 29 H -0.287 1.287 30 H -0.271 1.271 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.403 0.597 35 H 0.143 0.857 36 H 0.155 0.845 37 H 0.149 0.851 38 H 0.143 0.857 39 H 0.106 0.894 40 H 0.117 0.883 41 H 0.347 0.653 42 H 0.347 0.653 43 H 0.049 0.951 44 H 0.080 0.920 45 H 0.061 0.939 46 H 0.054 0.946 47 H -0.018 1.018 48 H -0.003 1.003 49 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.440 -9.753 23.083 25.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.010 3.990 3 H 0.133 0.867 4 C 0.313 3.687 5 O -0.450 6.450 6 N -0.277 5.277 7 C 0.063 3.937 8 C -0.184 4.184 9 C -0.101 4.101 10 C -0.154 4.154 11 C -0.107 4.107 12 C -0.149 4.149 13 C 0.005 3.995 14 N -0.322 5.322 15 C 0.270 3.730 16 O -0.448 6.448 17 C -0.027 4.027 18 H 0.140 0.860 19 N -0.343 5.343 20 C -0.135 4.135 21 C -0.120 4.120 22 C -0.014 4.014 23 C -0.576 4.576 24 H 0.079 0.921 25 C -0.198 4.198 26 N -0.575 5.575 27 Si 0.784 3.216 28 H -0.188 1.188 29 H -0.212 1.212 30 H -0.196 1.196 31 H 0.099 0.901 32 H 0.104 0.896 33 H 0.104 0.896 34 H 0.238 0.762 35 H 0.161 0.839 36 H 0.172 0.828 37 H 0.167 0.833 38 H 0.161 0.839 39 H 0.124 0.876 40 H 0.135 0.865 41 H 0.161 0.839 42 H 0.160 0.840 43 H 0.068 0.932 44 H 0.098 0.902 45 H 0.080 0.920 46 H 0.073 0.927 47 H 0.001 0.999 48 H 0.015 0.985 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.603 -9.081 22.712 24.513 hybrid contribution -0.144 0.585 0.392 0.719 sum 1.458 -8.497 23.104 24.660 Atomic orbital electron populations 1.22058 0.89330 1.04490 1.04917 1.20911 0.98591 0.98092 0.81442 0.86687 1.19639 0.76431 0.81904 0.90716 1.90827 1.50734 1.61739 1.41706 1.41917 1.67642 1.05453 1.12644 1.17201 0.99598 0.86286 0.90631 1.21441 1.03136 0.92335 1.01474 1.21218 0.96941 0.97544 0.94429 1.21395 0.99621 0.99157 0.95260 1.21364 0.96982 0.91458 1.00915 1.19640 1.05923 0.97298 0.92058 1.20148 1.01278 0.78591 0.99470 1.47087 1.41622 1.18699 1.24834 1.22946 0.77846 0.85880 0.86303 1.90673 1.59251 1.21872 1.73034 1.21719 0.91255 1.00319 0.89410 0.85993 1.59068 1.06320 1.20799 1.48125 1.21561 0.97196 1.00911 0.93859 1.21279 0.98790 0.98986 0.92971 1.19035 0.94501 0.94497 0.93359 1.21711 1.07725 1.29858 0.98269 0.92136 1.25932 0.95074 0.96712 1.02084 1.70091 1.15676 1.43082 1.28686 0.85591 0.78006 0.79558 0.78440 1.18777 1.21237 1.19608 0.90131 0.89634 0.89644 0.76179 0.83932 0.82768 0.83312 0.83901 0.87619 0.86522 0.83926 0.83985 0.93247 0.90177 0.92007 0.92689 0.99945 0.98477 0.92988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.45 8.84 71.98 0.64 -1.82 16 2 C 0.12 2.66 2.89 43.94 0.13 2.78 16 3 H 0.12 3.24 6.73 -2.39 -0.02 3.23 16 4 C 0.53 12.44 6.87 87.82 0.60 13.05 16 5 O -0.57 -17.37 17.51 -3.07 -0.05 -17.42 16 6 N -0.64 -11.57 4.74 -312.08 -1.48 -13.04 16 7 C 0.16 2.54 6.69 38.77 0.26 2.80 16 8 C -0.16 -1.94 9.52 22.63 0.22 -1.73 16 9 C -0.08 -0.82 10.03 22.07 0.22 -0.59 16 10 C -0.14 -1.50 10.06 22.15 0.22 -1.28 16 11 C -0.09 -1.20 9.42 22.40 0.21 -0.99 16 12 C -0.15 -2.32 5.81 -19.97 -0.12 -2.44 16 13 C 0.13 2.19 4.71 85.81 0.40 2.59 16 14 N -0.59 -12.93 2.47 -820.66 -2.03 -14.96 16 15 C 0.48 13.03 6.85 87.66 0.60 13.63 16 16 O -0.57 -19.26 15.42 -3.04 -0.05 -19.31 16 17 C 0.09 2.24 2.28 44.17 0.10 2.35 16 18 H 0.12 2.66 6.87 -2.39 -0.02 2.64 16 19 N -0.81 -21.39 8.44 -171.79 -1.45 -22.84 16 20 C -0.10 -2.93 4.43 30.59 0.14 -2.79 16 21 C -0.08 -3.10 5.04 30.59 0.15 -2.94 16 22 C 0.02 1.16 4.97 29.85 0.15 1.31 16 23 C -0.54 -29.69 9.11 25.60 0.23 -29.46 16 24 H 0.06 3.20 7.74 -2.91 -0.02 3.17 16 25 C 0.00 -0.04 5.46 84.66 0.46 0.43 16 26 N -0.93 -56.04 13.29 21.45 0.28 -55.75 16 27 Si 0.96 43.39 29.54 68.60 2.03 45.42 16 28 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 29 H -0.29 -12.80 7.11 99.48 0.71 -12.10 16 30 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 31 H 0.08 1.08 6.95 -2.39 -0.02 1.07 16 32 H 0.08 1.29 8.14 -2.39 -0.02 1.28 16 33 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 34 H 0.40 6.07 7.55 -92.70 -0.70 5.37 16 35 H 0.14 1.12 7.75 -2.91 -0.02 1.10 16 36 H 0.15 0.72 8.06 -2.91 -0.02 0.70 16 37 H 0.15 1.09 8.06 -2.91 -0.02 1.07 16 38 H 0.14 1.70 7.82 -2.91 -0.02 1.68 16 39 H 0.11 1.50 6.60 -2.39 -0.02 1.48 16 40 H 0.12 2.00 3.75 -2.39 -0.01 1.99 16 41 H 0.35 9.72 8.58 -89.70 -0.77 8.95 16 42 H 0.35 8.10 9.06 -89.69 -0.81 7.29 16 43 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 44 H 0.08 2.17 6.67 -2.39 -0.02 2.15 16 45 H 0.06 2.11 8.14 -2.38 -0.02 2.09 16 46 H 0.05 2.17 7.75 -2.39 -0.02 2.15 16 47 H -0.02 -1.00 8.14 -2.38 -0.02 -1.02 16 48 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 49 H 0.26 14.82 8.31 -92.70 -0.77 14.05 16 Total: -1.00 -74.21 392.80 0.60 -73.60 By element: Atomic # 1 Polarization: 30.67 SS G_CDS: -1.27 Total: 29.40 kcal Atomic # 6 Polarization: -9.71 SS G_CDS: 4.62 Total: -5.09 kcal Atomic # 7 Polarization: -101.93 SS G_CDS: -4.67 Total: -106.60 kcal Atomic # 8 Polarization: -36.63 SS G_CDS: -0.10 Total: -36.73 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Total: -74.21 0.60 -73.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119363999.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.067 kcal (2) G-P(sol) polarization free energy of solvation -74.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds