Wall clock time and date at job start Wed Apr 1 2020 03:18:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.22818 * 2 1 4 4 C 1.49457 * 109.35211 * 240.36842 * 2 1 3 5 5 O 1.21286 * 116.69329 * 94.28949 * 4 2 1 6 6 N 1.30158 * 126.62174 * 274.30993 * 4 2 1 7 7 C 1.37431 * 136.74221 * 340.21524 * 6 4 2 8 8 C 1.40583 * 115.07132 * 195.64448 * 7 6 4 9 9 C 1.37316 * 121.45256 * 179.82606 * 8 7 6 10 10 C 1.38334 * 119.67262 * 359.94847 * 9 8 7 11 11 C 1.37652 * 119.40025 * 0.18018 * 10 9 8 12 12 C 1.37976 * 126.41893 * 15.67156 * 7 6 4 13 13 C 1.49191 * 124.46738 * 0.19812 * 12 7 6 14 14 N 1.43869 * 115.00741 * 325.72571 * 13 12 7 15 15 C 1.34782 * 118.29253 * 255.44201 * 14 13 12 16 16 O 1.21284 * 119.99349 * 4.69936 * 15 14 13 17 17 C 1.50692 * 120.00367 * 184.70245 * 15 14 13 18 18 H 1.09001 * 109.47083 * 319.35766 * 17 15 14 19 19 N 1.46898 * 109.47133 * 199.36201 * 17 15 14 20 20 C 1.52995 * 109.47416 * 79.36221 * 17 15 14 21 21 C 1.52995 * 109.47407 * 185.00293 * 20 17 15 22 22 C 1.53003 * 109.47621 * 179.97438 * 21 20 17 23 23 C 1.50699 * 109.47442 * 180.02562 * 22 21 20 24 24 H 1.08003 * 119.99899 * 359.97438 * 23 22 21 25 25 C 1.37871 * 119.99692 * 180.02562 * 23 22 21 26 26 N 1.31514 * 120.00677 * 359.97438 * 25 23 22 27 27 Si 1.86804 * 119.99678 * 179.97438 * 25 23 22 28 28 H 1.48500 * 109.47077 * 359.97438 * 27 25 23 29 29 H 1.48498 * 109.47072 * 120.00242 * 27 25 23 30 30 H 1.48500 * 109.47079 * 239.99951 * 27 25 23 31 31 H 1.09005 * 109.47476 * 300.36262 * 1 2 3 32 32 H 1.09003 * 109.47486 * 60.36206 * 1 2 3 33 33 H 1.09001 * 109.46932 * 180.36146 * 1 2 3 34 34 H 0.97001 * 111.62864 * 160.18366 * 6 4 2 35 35 H 1.07994 * 119.27542 * 359.80150 * 8 7 6 36 36 H 1.07999 * 120.16502 * 179.97438 * 9 8 7 37 37 H 1.08001 * 120.29750 * 180.19789 * 10 9 8 38 38 H 1.08003 * 119.30737 * 179.97438 * 11 10 9 39 39 H 1.08999 * 108.25314 * 204.29866 * 13 12 7 40 40 H 1.08997 * 108.28897 * 87.17476 * 13 12 7 41 41 H 1.00902 * 110.99844 * 176.03859 * 19 17 15 42 42 H 1.00896 * 111.00548 * 299.99811 * 19 17 15 43 43 H 1.08998 * 109.47348 * 64.99660 * 20 17 15 44 44 H 1.09004 * 109.46949 * 304.99870 * 20 17 15 45 45 H 1.09008 * 109.47381 * 59.99357 * 21 20 17 46 46 H 1.09000 * 109.47418 * 299.99920 * 21 20 17 47 47 H 1.08998 * 109.46977 * 59.99801 * 22 21 20 48 48 H 1.09003 * 109.46407 * 299.99941 * 22 21 20 49 49 H 0.96994 * 120.00298 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8890 1.0292 0.0000 4 6 2.0253 -0.6972 -1.2257 5 8 2.2823 0.0012 -2.1834 6 7 2.2085 -1.9777 -1.3701 7 6 2.3761 -3.0641 -0.5452 8 6 2.8815 -4.2161 -1.1726 9 6 3.1032 -5.3754 -0.4708 10 6 2.8269 -5.4193 0.8839 11 6 2.3291 -4.2983 1.5087 12 6 2.0982 -3.1178 0.8053 13 6 1.5550 -1.9790 1.6015 14 7 2.0113 -0.6777 1.1912 15 6 2.9376 -0.0575 1.9487 16 8 3.4270 -0.6311 2.8987 17 6 3.3651 1.3486 1.6154 18 1 3.4610 1.4526 0.5346 19 7 4.6590 1.6307 2.2512 20 6 2.3170 2.3363 2.1318 21 6 2.6870 3.7522 1.6857 22 6 1.6385 4.7399 2.2015 23 6 2.0026 6.1345 1.7615 24 1 2.8931 6.2999 1.1731 25 6 1.1996 7.1993 2.1110 26 7 0.1156 6.9981 2.8279 27 14 1.6513 8.9281 1.5661 28 1 2.9084 8.8857 0.7767 29 1 0.5587 9.4845 0.7284 30 1 1.8463 9.7885 2.7606 31 1 -0.3634 0.5195 0.8867 32 1 -0.3634 0.5082 -0.8932 33 1 -0.3633 -1.0277 0.0065 34 1 2.2327 -2.2322 -2.3058 35 1 3.0999 -4.1889 -2.2299 36 1 3.4917 -6.2485 -0.9739 37 1 3.0004 -6.3248 1.4464 38 1 2.1135 -4.3343 2.5664 39 1 1.8327 -2.1287 2.6448 40 1 0.4675 -2.0009 1.5316 41 1 4.9984 2.5445 1.9904 42 1 4.5963 1.5409 3.2542 43 1 2.2843 2.2953 3.2205 44 1 1.3392 2.0723 1.7288 45 1 2.7196 3.7932 0.5968 46 1 3.6647 4.0164 2.0886 47 1 1.6055 4.6991 3.2902 48 1 0.6610 4.4756 1.7981 49 1 -0.4495 7.7472 3.0734 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119364002.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:18:37 Heat of formation + Delta-G solvation = -34.908841 kcal Electronic energy + Delta-G solvation = -30996.287540 eV Core-core repulsion = 26923.238478 eV Total energy + Delta-G solvation = -4073.049062 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.92621 -40.00249 -39.39690 -36.60839 -36.14857 -35.56976 -33.45317 -32.75721 -31.27987 -31.00062 -30.01867 -28.36067 -27.02287 -25.34654 -24.98027 -23.35495 -22.77840 -21.84400 -20.38340 -20.27381 -19.72714 -18.25680 -17.90602 -16.94873 -16.60965 -16.33946 -16.10699 -15.69464 -15.53984 -15.17366 -15.09640 -14.63543 -14.52586 -14.37628 -13.96103 -13.87778 -13.59039 -13.46260 -13.25154 -12.81756 -12.64645 -12.54273 -12.27512 -12.18628 -12.12806 -11.84730 -11.66383 -11.56151 -11.25633 -11.12464 -10.85888 -10.76206 -10.60845 -10.56203 -9.90489 -9.80312 -9.42820 -9.21042 -9.14606 -9.09539 -8.54471 -8.39306 -8.37834 -6.04307 -4.06925 0.76646 0.91474 2.10785 2.43250 2.63210 2.75575 3.28775 3.36619 3.39481 3.40750 3.98764 4.20833 4.33204 4.38002 4.42861 4.47403 4.62493 4.70614 4.80302 4.92691 4.97507 5.10201 5.12442 5.19099 5.23165 5.30488 5.31916 5.38202 5.46847 5.53608 5.63862 5.66370 5.79786 5.88526 5.98252 6.13454 6.17689 6.19870 6.30485 6.44915 6.52195 6.69136 6.86017 6.98771 7.11454 7.20042 7.54127 7.55674 7.60875 7.72760 7.94690 7.99408 8.36809 9.00246 9.57841 11.06911 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.019675 B = 0.002473 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.751991 B =11318.192698 C =11814.895425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.116 3.884 3 H 0.143 0.857 4 C 0.520 3.480 5 O -0.524 6.524 6 N -0.648 5.648 7 C 0.182 3.818 8 C -0.164 4.164 9 C -0.086 4.086 10 C -0.141 4.141 11 C -0.077 4.077 12 C -0.130 4.130 13 C 0.146 3.854 14 N -0.603 5.603 15 C 0.526 3.474 16 O -0.517 6.517 17 C 0.069 3.931 18 H 0.101 0.899 19 N -0.828 5.828 20 C -0.149 4.149 21 C -0.110 4.110 22 C 0.023 3.977 23 C -0.521 4.521 24 H 0.056 0.944 25 C 0.056 3.944 26 N -0.895 5.895 27 Si 0.891 3.109 28 H -0.272 1.272 29 H -0.284 1.284 30 H -0.284 1.284 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.065 0.935 34 H 0.397 0.603 35 H 0.126 0.874 36 H 0.128 0.872 37 H 0.128 0.872 38 H 0.129 0.871 39 H 0.109 0.891 40 H 0.084 0.916 41 H 0.354 0.646 42 H 0.349 0.651 43 H 0.067 0.933 44 H 0.067 0.933 45 H 0.052 0.948 46 H 0.049 0.951 47 H 0.015 0.985 48 H 0.016 0.984 49 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.374 -26.581 -5.937 27.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.009 3.991 3 H 0.160 0.840 4 C 0.306 3.694 5 O -0.399 6.399 6 N -0.286 5.286 7 C 0.086 3.914 8 C -0.185 4.185 9 C -0.104 4.104 10 C -0.160 4.160 11 C -0.096 4.096 12 C -0.134 4.134 13 C 0.023 3.977 14 N -0.338 5.338 15 C 0.314 3.686 16 O -0.390 6.390 17 C -0.046 4.046 18 H 0.119 0.881 19 N -0.361 5.361 20 C -0.189 4.189 21 C -0.148 4.148 22 C -0.014 4.014 23 C -0.559 4.559 24 H 0.074 0.926 25 C -0.145 4.145 26 N -0.535 5.535 27 Si 0.719 3.281 28 H -0.197 1.197 29 H -0.210 1.210 30 H -0.210 1.210 31 H 0.105 0.895 32 H 0.102 0.898 33 H 0.084 0.916 34 H 0.231 0.769 35 H 0.144 0.856 36 H 0.146 0.854 37 H 0.146 0.854 38 H 0.147 0.853 39 H 0.127 0.873 40 H 0.102 0.898 41 H 0.169 0.831 42 H 0.163 0.837 43 H 0.086 0.914 44 H 0.086 0.914 45 H 0.071 0.929 46 H 0.068 0.932 47 H 0.033 0.967 48 H 0.034 0.966 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.884 -26.835 -5.959 27.554 hybrid contribution -0.424 1.567 -0.260 1.644 sum 1.460 -25.269 -6.219 26.064 Atomic orbital electron populations 1.22124 0.91194 1.03412 1.05133 1.21372 0.97753 0.98580 0.81400 0.83968 1.19784 0.76966 0.81438 0.91204 1.90881 1.48164 1.60801 1.40081 1.42038 1.68756 1.05955 1.11875 1.16988 0.97908 0.86119 0.90424 1.21189 1.03984 0.92762 1.00519 1.20838 0.98048 0.97128 0.94421 1.21021 1.01391 0.98710 0.94921 1.21091 0.97027 0.91621 0.99889 1.19557 1.04783 0.97161 0.91918 1.19419 0.98952 0.79702 0.99630 1.46940 1.43201 1.17735 1.25926 1.20978 0.77242 0.88313 0.82021 1.90655 1.52730 1.66870 1.28748 1.21562 0.91465 0.90661 1.00886 0.88145 1.58682 1.25140 1.37057 1.15221 1.22476 0.98086 0.96543 1.01761 1.21675 1.00785 0.92138 1.00172 1.19074 0.93302 0.92732 0.96296 1.21275 1.09112 0.92090 1.33419 0.92604 1.25025 0.95050 0.99241 0.95152 1.69966 1.14280 1.31274 1.37946 0.86549 0.78491 0.84622 0.78433 1.19699 1.20987 1.21026 0.89506 0.89781 0.91624 0.76900 0.85619 0.85362 0.85430 0.85313 0.87283 0.89787 0.83086 0.83672 0.91388 0.91418 0.92881 0.93197 0.96696 0.96567 0.93039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.46 8.85 37.16 0.33 -1.13 16 2 C 0.12 1.31 2.26 -70.35 -0.16 1.15 16 3 H 0.14 1.74 4.50 -51.93 -0.23 1.51 16 4 C 0.52 6.24 6.89 -13.58 -0.09 6.15 16 5 O -0.52 -7.85 17.51 5.55 0.10 -7.76 16 6 N -0.65 -6.43 4.74 -11.64 -0.06 -6.48 16 7 C 0.18 1.73 6.69 -84.57 -0.57 1.16 16 8 C -0.16 -1.25 9.52 -39.03 -0.37 -1.62 16 9 C -0.09 -0.58 10.03 -39.88 -0.40 -0.98 16 10 C -0.14 -0.99 10.06 -39.76 -0.40 -1.39 16 11 C -0.08 -0.63 9.42 -39.38 -0.37 -1.00 16 12 C -0.13 -1.25 5.80 -105.03 -0.61 -1.86 16 13 C 0.15 1.47 5.26 -7.31 -0.04 1.43 16 14 N -0.60 -7.08 2.47 -173.35 -0.43 -7.51 16 15 C 0.53 7.59 6.84 -10.99 -0.08 7.52 16 16 O -0.52 -8.72 15.45 5.55 0.09 -8.63 16 17 C 0.07 0.99 2.33 -68.87 -0.16 0.83 16 18 H 0.10 1.42 6.52 -51.93 -0.34 1.08 16 19 N -0.83 -11.88 8.93 -5.66 -0.05 -11.93 16 20 C -0.15 -2.32 4.50 -26.74 -0.12 -2.44 16 21 C -0.11 -2.08 4.92 -26.73 -0.13 -2.21 16 22 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 23 C -0.52 -14.41 9.11 -34.44 -0.31 -14.72 16 24 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 25 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 26 N -0.90 -26.54 13.29 55.43 0.74 -25.81 16 27 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 28 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 29 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 30 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 31 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.06 0.51 6.95 -51.93 -0.36 0.15 16 34 H 0.40 3.31 7.55 -40.82 -0.31 3.00 16 35 H 0.13 0.71 7.75 -52.49 -0.41 0.30 16 36 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 37 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 38 H 0.13 0.86 7.82 -52.48 -0.41 0.45 16 39 H 0.11 1.18 6.40 -51.93 -0.33 0.84 16 40 H 0.08 0.68 6.60 -51.93 -0.34 0.34 16 41 H 0.35 4.77 7.55 -39.29 -0.30 4.48 16 42 H 0.35 5.03 8.58 -39.29 -0.34 4.69 16 43 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 44 H 0.07 1.00 7.12 -51.93 -0.37 0.63 16 45 H 0.05 0.99 8.14 -51.92 -0.42 0.57 16 46 H 0.05 0.91 6.87 -51.93 -0.36 0.56 16 47 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 48 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 49 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 391.39 15.07 5.90 5.90 Total: -1.00 -33.97 391.39 -9.47 -43.45 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: -7.02 Total: 9.49 kcal Atomic # 6 Polarization: -3.46 SS G_CDS: -3.72 Total: -7.18 kcal Atomic # 7 Polarization: -51.93 SS G_CDS: 0.20 Total: -51.72 kcal Atomic # 8 Polarization: -16.58 SS G_CDS: 0.18 Total: -16.39 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.97 -9.47 -43.45 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119364002.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.537 kcal (2) G-P(sol) polarization free energy of solvation -33.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds