Wall clock time and date at job start Wed Apr 1 2020 03:18:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.22818 * 2 1 4 4 C 1.49457 * 109.35211 * 240.36842 * 2 1 3 5 5 O 1.21286 * 116.69329 * 94.28949 * 4 2 1 6 6 N 1.30158 * 126.62174 * 274.30993 * 4 2 1 7 7 C 1.37431 * 136.74221 * 340.21524 * 6 4 2 8 8 C 1.40583 * 115.07132 * 195.64448 * 7 6 4 9 9 C 1.37316 * 121.45256 * 179.82606 * 8 7 6 10 10 C 1.38334 * 119.67262 * 359.94847 * 9 8 7 11 11 C 1.37652 * 119.40025 * 0.18018 * 10 9 8 12 12 C 1.37976 * 126.41893 * 15.67156 * 7 6 4 13 13 C 1.49191 * 124.46738 * 0.19812 * 12 7 6 14 14 N 1.43869 * 115.00741 * 325.72571 * 13 12 7 15 15 C 1.34782 * 118.29253 * 255.44201 * 14 13 12 16 16 O 1.21284 * 119.99349 * 4.69936 * 15 14 13 17 17 C 1.50692 * 120.00367 * 184.70245 * 15 14 13 18 18 H 1.09001 * 109.47083 * 319.35766 * 17 15 14 19 19 N 1.46898 * 109.47133 * 199.36201 * 17 15 14 20 20 C 1.52995 * 109.47416 * 79.36221 * 17 15 14 21 21 C 1.52995 * 109.47407 * 185.00293 * 20 17 15 22 22 C 1.53003 * 109.47621 * 179.97438 * 21 20 17 23 23 C 1.50699 * 109.47442 * 180.02562 * 22 21 20 24 24 H 1.08003 * 119.99899 * 359.97438 * 23 22 21 25 25 C 1.37871 * 119.99692 * 180.02562 * 23 22 21 26 26 N 1.31514 * 120.00677 * 359.97438 * 25 23 22 27 27 Si 1.86804 * 119.99678 * 179.97438 * 25 23 22 28 28 H 1.48500 * 109.47077 * 359.97438 * 27 25 23 29 29 H 1.48498 * 109.47072 * 120.00242 * 27 25 23 30 30 H 1.48500 * 109.47079 * 239.99951 * 27 25 23 31 31 H 1.09005 * 109.47476 * 300.36262 * 1 2 3 32 32 H 1.09003 * 109.47486 * 60.36206 * 1 2 3 33 33 H 1.09001 * 109.46932 * 180.36146 * 1 2 3 34 34 H 0.97001 * 111.62864 * 160.18366 * 6 4 2 35 35 H 1.07994 * 119.27542 * 359.80150 * 8 7 6 36 36 H 1.07999 * 120.16502 * 179.97438 * 9 8 7 37 37 H 1.08001 * 120.29750 * 180.19789 * 10 9 8 38 38 H 1.08003 * 119.30737 * 179.97438 * 11 10 9 39 39 H 1.08999 * 108.25314 * 204.29866 * 13 12 7 40 40 H 1.08997 * 108.28897 * 87.17476 * 13 12 7 41 41 H 1.00902 * 110.99844 * 176.03859 * 19 17 15 42 42 H 1.00896 * 111.00548 * 299.99811 * 19 17 15 43 43 H 1.08998 * 109.47348 * 64.99660 * 20 17 15 44 44 H 1.09004 * 109.46949 * 304.99870 * 20 17 15 45 45 H 1.09008 * 109.47381 * 59.99357 * 21 20 17 46 46 H 1.09000 * 109.47418 * 299.99920 * 21 20 17 47 47 H 1.08998 * 109.46977 * 59.99801 * 22 21 20 48 48 H 1.09003 * 109.46407 * 299.99941 * 22 21 20 49 49 H 0.96994 * 120.00298 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8890 1.0292 0.0000 4 6 2.0253 -0.6972 -1.2257 5 8 2.2823 0.0012 -2.1834 6 7 2.2085 -1.9777 -1.3701 7 6 2.3761 -3.0641 -0.5452 8 6 2.8815 -4.2161 -1.1726 9 6 3.1032 -5.3754 -0.4708 10 6 2.8269 -5.4193 0.8839 11 6 2.3291 -4.2983 1.5087 12 6 2.0982 -3.1178 0.8053 13 6 1.5550 -1.9790 1.6015 14 7 2.0113 -0.6777 1.1912 15 6 2.9376 -0.0575 1.9487 16 8 3.4270 -0.6311 2.8987 17 6 3.3651 1.3486 1.6154 18 1 3.4610 1.4526 0.5346 19 7 4.6590 1.6307 2.2512 20 6 2.3170 2.3363 2.1318 21 6 2.6870 3.7522 1.6857 22 6 1.6385 4.7399 2.2015 23 6 2.0026 6.1345 1.7615 24 1 2.8931 6.2999 1.1731 25 6 1.1996 7.1993 2.1110 26 7 0.1156 6.9981 2.8279 27 14 1.6513 8.9281 1.5661 28 1 2.9084 8.8857 0.7767 29 1 0.5587 9.4845 0.7284 30 1 1.8463 9.7885 2.7606 31 1 -0.3634 0.5195 0.8867 32 1 -0.3634 0.5082 -0.8932 33 1 -0.3633 -1.0277 0.0065 34 1 2.2327 -2.2322 -2.3058 35 1 3.0999 -4.1889 -2.2299 36 1 3.4917 -6.2485 -0.9739 37 1 3.0004 -6.3248 1.4464 38 1 2.1135 -4.3343 2.5664 39 1 1.8327 -2.1287 2.6448 40 1 0.4675 -2.0009 1.5316 41 1 4.9984 2.5445 1.9904 42 1 4.5963 1.5409 3.2542 43 1 2.2843 2.2953 3.2205 44 1 1.3392 2.0723 1.7288 45 1 2.7196 3.7932 0.5968 46 1 3.6647 4.0164 2.0886 47 1 1.6055 4.6991 3.2902 48 1 0.6610 4.4756 1.7981 49 1 -0.4495 7.7472 3.0734 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119364002.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:18:36 Heat of formation + Delta-G solvation = -57.781799 kcal Electronic energy + Delta-G solvation = -30997.279386 eV Core-core repulsion = 26923.238478 eV Total energy + Delta-G solvation = -4074.040908 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.81562 -41.04784 -40.11945 -37.71268 -37.40984 -36.35253 -35.33660 -33.54053 -33.00996 -31.82701 -30.71034 -29.67880 -28.26771 -26.43100 -26.11683 -24.42012 -23.82176 -22.87016 -21.86978 -21.20490 -20.67789 -19.14854 -18.90827 -18.46952 -17.82440 -17.37738 -16.96713 -16.66032 -16.54972 -16.37583 -16.20157 -16.09498 -15.64319 -15.45702 -15.04162 -14.73414 -14.61908 -14.35860 -14.29135 -14.14429 -13.74490 -13.67803 -13.56187 -13.36012 -13.05194 -12.99789 -12.80756 -12.61827 -12.54872 -12.39957 -12.33301 -12.20135 -11.85547 -11.53494 -11.53038 -11.43518 -11.25992 -10.86280 -10.56050 -10.08906 -9.80840 -9.73701 -9.07169 -8.20408 -6.30744 0.06951 0.32839 1.23180 1.34833 1.39364 1.40460 1.53004 1.71970 1.90058 2.40600 2.78792 3.13265 3.13759 3.17058 3.51877 3.61166 3.70067 3.76839 3.85062 3.88435 3.98008 4.04225 4.28845 4.32900 4.40751 4.45937 4.47574 4.55132 4.56615 4.64257 4.71850 4.79917 4.95675 4.96266 5.00554 5.06235 5.15271 5.21426 5.29953 5.42422 5.51794 5.53475 5.58367 5.72790 5.83463 5.85414 5.88663 6.06236 6.24553 6.32321 6.42235 6.68082 6.86675 6.89527 7.38702 8.91266 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.019675 B = 0.002473 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.751991 B =11318.192698 C =11814.895425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.113 3.887 3 H 0.131 0.869 4 C 0.521 3.479 5 O -0.562 6.562 6 N -0.639 5.639 7 C 0.158 3.842 8 C -0.165 4.165 9 C -0.086 4.086 10 C -0.138 4.138 11 C -0.090 4.090 12 C -0.145 4.145 13 C 0.142 3.858 14 N -0.593 5.593 15 C 0.524 3.476 16 O -0.545 6.545 17 C 0.077 3.923 18 H 0.105 0.895 19 N -0.831 5.831 20 C -0.135 4.135 21 C -0.096 4.096 22 C 0.026 3.974 23 C -0.540 4.540 24 H 0.060 0.940 25 C 0.000 4.000 26 N -0.932 5.932 27 Si 0.961 3.039 28 H -0.262 1.262 29 H -0.279 1.279 30 H -0.280 1.280 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.404 0.596 35 H 0.144 0.856 36 H 0.156 0.844 37 H 0.151 0.849 38 H 0.139 0.861 39 H 0.100 0.900 40 H 0.104 0.896 41 H 0.358 0.642 42 H 0.349 0.651 43 H 0.059 0.941 44 H 0.075 0.925 45 H 0.058 0.942 46 H 0.056 0.944 47 H -0.011 1.011 48 H -0.005 1.005 49 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.931 -28.173 -6.888 29.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.006 3.994 3 H 0.149 0.851 4 C 0.308 3.692 5 O -0.440 6.440 6 N -0.277 5.277 7 C 0.062 3.938 8 C -0.185 4.185 9 C -0.104 4.104 10 C -0.157 4.157 11 C -0.109 4.109 12 C -0.149 4.149 13 C 0.020 3.980 14 N -0.327 5.327 15 C 0.313 3.687 16 O -0.421 6.421 17 C -0.038 4.038 18 H 0.123 0.877 19 N -0.364 5.364 20 C -0.175 4.175 21 C -0.134 4.134 22 C -0.011 4.011 23 C -0.578 4.578 24 H 0.078 0.922 25 C -0.198 4.198 26 N -0.573 5.573 27 Si 0.786 3.214 28 H -0.186 1.186 29 H -0.204 1.204 30 H -0.206 1.206 31 H 0.106 0.894 32 H 0.105 0.895 33 H 0.100 0.900 34 H 0.239 0.761 35 H 0.162 0.838 36 H 0.174 0.826 37 H 0.169 0.831 38 H 0.156 0.844 39 H 0.119 0.881 40 H 0.122 0.878 41 H 0.174 0.826 42 H 0.163 0.837 43 H 0.078 0.922 44 H 0.093 0.907 45 H 0.076 0.924 46 H 0.075 0.925 47 H 0.007 0.993 48 H 0.014 0.986 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.434 -28.479 -6.922 29.409 hybrid contribution -0.603 1.916 0.057 2.009 sum 1.831 -26.563 -6.866 27.497 Atomic orbital electron populations 1.22114 0.89425 1.04539 1.05287 1.21405 0.99132 0.97887 0.80965 0.85116 1.19784 0.76654 0.81951 0.90772 1.90864 1.50220 1.61761 1.41191 1.41904 1.67763 1.05476 1.12577 1.17213 0.99490 0.86497 0.90584 1.21468 1.03119 0.92329 1.01592 1.21229 0.97091 0.97639 0.94437 1.21385 0.99898 0.99045 0.95341 1.21304 0.97371 0.91650 1.00535 1.19618 1.05650 0.97428 0.92172 1.19577 1.00171 0.79030 0.99272 1.46904 1.42088 1.18252 1.25424 1.20930 0.77532 0.88293 0.81963 1.90640 1.53940 1.67479 1.29999 1.21448 0.90873 0.90514 1.00965 0.87737 1.58689 1.25041 1.37362 1.15262 1.22273 0.99032 0.94985 1.01177 1.21445 0.99154 0.92562 1.00216 1.18977 0.94068 0.93473 0.94569 1.21733 1.09212 0.93578 1.33284 0.92179 1.25940 0.94961 1.03711 0.95205 1.70088 1.15404 1.32646 1.39148 0.85460 0.78561 0.79274 0.78137 1.18636 1.20428 1.20551 0.89450 0.89488 0.90025 0.76073 0.83792 0.82597 0.83082 0.84364 0.88144 0.87830 0.82624 0.83691 0.92194 0.90659 0.92372 0.92519 0.99287 0.98645 0.92841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.71 8.85 71.98 0.64 -2.07 16 2 C 0.11 2.52 2.26 44.09 0.10 2.62 16 3 H 0.13 3.22 4.50 -2.39 -0.01 3.21 16 4 C 0.52 12.37 6.89 87.97 0.61 12.98 16 5 O -0.56 -16.95 17.51 -3.05 -0.05 -17.00 16 6 N -0.64 -12.13 4.74 -311.62 -1.48 -13.61 16 7 C 0.16 2.77 6.69 38.78 0.26 3.03 16 8 C -0.16 -2.14 9.52 22.63 0.22 -1.92 16 9 C -0.09 -0.89 10.03 22.08 0.22 -0.66 16 10 C -0.14 -1.54 10.06 22.15 0.22 -1.32 16 11 C -0.09 -1.31 9.42 22.40 0.21 -1.10 16 12 C -0.14 -2.62 5.80 -20.13 -0.12 -2.73 16 13 C 0.14 2.74 5.26 85.65 0.45 3.19 16 14 N -0.59 -13.70 2.47 -820.74 -2.03 -15.72 16 15 C 0.52 15.08 6.84 87.65 0.60 15.68 16 16 O -0.54 -18.41 15.45 -3.04 -0.05 -18.46 16 17 C 0.08 2.19 2.33 44.17 0.10 2.30 16 18 H 0.10 2.93 6.52 -2.39 -0.02 2.91 16 19 N -0.83 -23.58 8.93 -171.82 -1.53 -25.11 16 20 C -0.13 -4.22 4.50 30.59 0.14 -4.09 16 21 C -0.10 -3.65 4.92 30.59 0.15 -3.50 16 22 C 0.03 1.33 4.97 29.85 0.15 1.48 16 23 C -0.54 -30.15 9.11 25.60 0.23 -29.92 16 24 H 0.06 3.23 7.74 -2.91 -0.02 3.20 16 25 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 26 N -0.93 -56.17 13.29 21.45 0.28 -55.89 16 27 Si 0.96 44.07 29.54 68.60 2.03 46.10 16 28 H -0.26 -11.50 7.11 99.48 0.71 -10.80 16 29 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 30 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 31 H 0.09 1.52 8.14 -2.38 -0.02 1.50 16 32 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.08 1.14 6.95 -2.39 -0.02 1.12 16 34 H 0.40 6.37 7.55 -92.71 -0.70 5.67 16 35 H 0.14 1.26 7.75 -2.91 -0.02 1.23 16 36 H 0.16 0.73 8.06 -2.91 -0.02 0.71 16 37 H 0.15 0.94 8.06 -2.91 -0.02 0.92 16 38 H 0.14 1.66 7.82 -2.91 -0.02 1.64 16 39 H 0.10 2.14 6.40 -2.39 -0.02 2.12 16 40 H 0.10 1.55 6.60 -2.39 -0.02 1.53 16 41 H 0.36 9.47 7.55 -89.69 -0.68 8.79 16 42 H 0.35 10.03 8.58 -89.70 -0.77 9.26 16 43 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 44 H 0.07 2.23 7.12 -2.39 -0.02 2.22 16 45 H 0.06 2.15 8.14 -2.38 -0.02 2.13 16 46 H 0.06 2.06 6.87 -2.39 -0.02 2.05 16 47 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 48 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 49 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 Total: -1.00 -73.57 391.39 0.68 -72.89 By element: Atomic # 1 Polarization: 33.54 SS G_CDS: -1.14 Total: 32.40 kcal Atomic # 6 Polarization: -10.24 SS G_CDS: 4.64 Total: -5.60 kcal Atomic # 7 Polarization: -105.58 SS G_CDS: -4.75 Total: -110.33 kcal Atomic # 8 Polarization: -35.36 SS G_CDS: -0.10 Total: -35.46 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -73.57 0.68 -72.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119364002.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.108 kcal (2) G-P(sol) polarization free energy of solvation -73.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds