Wall clock time and date at job start Wed Apr 1 2020 04:16:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47005 * 2 1 4 4 C 1.52999 * 109.46885 * 240.00723 * 2 1 3 5 5 C 1.52999 * 109.47451 * 174.99977 * 4 2 1 6 6 H 1.09002 * 109.46716 * 304.99789 * 5 4 2 7 7 C 1.52997 * 109.47317 * 184.99880 * 5 4 2 8 8 N 1.46500 * 109.46944 * 64.99440 * 5 4 2 9 9 C 1.34780 * 119.99910 * 205.00356 * 8 5 4 10 10 O 1.21281 * 119.99723 * 0.02562 * 9 8 5 11 11 C 1.50693 * 120.00182 * 180.02562 * 9 8 5 12 12 C 1.50699 * 109.47318 * 179.97438 * 11 9 8 13 13 C 1.38305 * 119.81190 * 89.99500 * 12 11 9 14 14 C 1.38393 * 119.82390 * 179.97438 * 13 12 11 15 15 C 1.37678 * 119.91716 * 0.02562 * 14 13 12 16 16 C 1.38902 * 120.80573 * 0.02562 * 15 14 13 17 17 C 1.37936 * 119.81297 * 269.72268 * 12 11 9 18 18 N 1.39527 * 110.22872 * 179.97438 * 16 15 14 19 19 C 1.34367 * 112.24734 * 0.02562 * 18 16 15 20 20 O 1.21291 * 126.44656 * 180.02562 * 19 18 16 21 21 C 1.51130 * 132.84927 * 179.97438 * 15 14 13 22 22 N 1.46489 * 109.47481 * 120.00408 * 2 1 3 23 23 C 1.36939 * 120.00024 * 275.00064 * 22 2 1 24 24 H 1.07992 * 120.00021 * 359.97438 * 23 22 2 25 25 C 1.38814 * 119.99873 * 179.97438 * 23 22 2 26 26 N 1.31624 * 119.99946 * 0.02562 * 25 23 22 27 27 Si 1.86801 * 119.99928 * 179.97438 * 25 23 22 28 28 H 1.48492 * 109.47208 * 0.02562 * 27 25 23 29 29 H 1.48504 * 109.46978 * 120.00487 * 27 25 23 30 30 H 1.48505 * 109.47199 * 240.00277 * 27 25 23 31 31 H 1.08995 * 109.47875 * 59.99426 * 1 2 3 32 32 H 1.09005 * 109.47529 * 180.02562 * 1 2 3 33 33 H 1.09007 * 109.47202 * 299.99410 * 1 2 3 34 34 H 1.08998 * 109.47348 * 54.99095 * 4 2 1 35 35 H 1.09000 * 109.46961 * 294.99610 * 4 2 1 36 36 H 1.09002 * 109.47153 * 299.99641 * 7 5 4 37 37 H 1.09001 * 109.46832 * 179.97438 * 7 5 4 38 38 H 1.09004 * 109.47261 * 59.99813 * 7 5 4 39 39 H 0.96994 * 119.99975 * 25.00733 * 8 5 4 40 40 H 1.09007 * 109.46680 * 299.99959 * 11 9 8 41 41 H 1.09000 * 109.47439 * 59.99224 * 11 9 8 42 42 H 1.08001 * 120.08785 * 359.97438 * 13 12 11 43 43 H 1.07997 * 120.03957 * 179.97438 * 14 13 12 44 44 H 1.08002 * 119.93296 * 359.97438 * 17 12 11 45 45 H 0.97001 * 123.88053 * 179.97438 * 18 16 15 46 46 H 1.08997 * 110.51576 * 298.68152 * 21 15 14 47 47 H 1.08998 * 110.51234 * 61.40009 * 21 15 14 48 48 H 0.97001 * 120.00333 * 94.99644 * 22 2 1 49 49 H 0.97001 * 119.99698 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2493 5 6 3.5647 -0.6132 -1.3139 6 1 3.8570 0.4359 -1.2679 7 6 4.0643 -1.2248 -2.6243 8 7 4.1536 -1.3342 -0.1827 9 6 5.3747 -0.9911 0.2730 10 8 5.9858 -0.0852 -0.2531 11 6 5.9808 -1.7330 1.4363 12 6 7.3396 -1.1592 1.7451 13 6 7.4570 -0.1163 2.6460 14 6 8.7048 0.4104 2.9302 15 6 9.8239 -0.1046 2.3154 16 6 9.7190 -1.1512 1.4082 17 6 8.4597 -1.6808 1.1321 18 7 10.9804 -1.4964 0.9219 19 6 11.9547 -0.7374 1.4510 20 8 13.1408 -0.8164 1.2098 21 6 11.2936 0.2363 2.4034 22 7 2.0184 -0.6906 1.1960 23 6 2.1492 -0.0076 2.3756 24 1 1.8927 1.0403 2.4241 25 6 2.6115 -0.6622 3.5091 26 7 2.9246 -1.9393 3.4498 27 14 2.7906 0.2697 5.1181 28 1 2.3766 1.6821 4.9208 29 1 1.9296 -0.3582 6.1523 30 1 4.2076 0.2259 5.5604 31 1 -0.3635 0.5139 -0.8898 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8901 34 1 1.6052 -0.2616 -2.1370 35 1 1.7516 -1.7714 -1.2057 36 1 3.7721 -2.2739 -2.6703 37 1 5.1506 -1.1475 -2.6704 38 1 3.6261 -0.6883 -3.4660 39 1 3.6647 -2.0584 0.2383 40 1 5.3355 -1.6299 2.3088 41 1 6.0815 -2.7880 1.1816 42 1 6.5773 0.2859 3.1263 43 1 8.8005 1.2251 3.6327 44 1 8.3603 -2.4984 0.4335 45 1 11.1361 -2.2036 0.2765 46 1 11.4674 1.2632 2.0820 47 1 11.6606 0.0854 3.4186 48 1 2.2491 -1.6318 1.1524 49 1 3.2480 -2.3966 4.2418 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134639064.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:58 Heat of formation + Delta-G solvation = -33.170930 kcal Electronic energy + Delta-G solvation = -30800.860974 eV Core-core repulsion = 26727.887273 eV Total energy + Delta-G solvation = -4072.973701 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.41313 -39.46541 -38.37458 -36.87161 -35.76113 -34.17007 -32.80667 -32.29933 -30.91611 -29.71990 -29.54927 -28.54651 -26.39026 -25.87691 -23.71525 -22.69735 -21.79065 -21.40548 -20.40620 -20.24634 -19.43261 -17.73572 -17.23844 -16.63407 -16.45517 -16.06683 -15.85418 -15.44362 -14.97129 -14.84901 -14.34692 -14.05259 -13.81946 -13.80416 -13.66462 -13.34670 -13.06791 -12.96348 -12.84201 -12.58677 -12.35846 -12.19223 -11.96297 -11.83754 -11.71313 -11.68139 -11.32478 -11.02069 -10.89292 -10.82197 -10.77185 -10.70375 -10.39072 -10.29353 -10.26706 -9.93134 -9.73881 -9.24760 -9.01882 -8.59092 -8.34535 -7.94041 -7.00467 -5.87199 -3.12887 1.24162 1.41924 2.39733 2.92785 3.35028 3.35967 3.44788 3.45637 3.70869 4.04086 4.07886 4.38416 4.52635 4.85451 5.00800 5.07670 5.22534 5.24629 5.36959 5.39546 5.44194 5.49675 5.56262 5.59359 5.65144 5.66448 5.85839 5.89051 5.93319 5.97709 5.99214 6.11228 6.12742 6.21710 6.34095 6.38432 6.40918 6.50801 6.53508 6.56785 6.58421 6.70053 6.82499 6.84836 7.02356 7.10992 7.20147 7.64895 7.84613 8.21443 8.32901 8.94123 9.44171 9.98445 10.34546 11.35251 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011587 B = 0.003370 C = 0.002757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2415.856182 B = 8307.337168 C =10151.745343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.169 3.831 3 H 0.048 0.952 4 C -0.133 4.133 5 C 0.151 3.849 6 H 0.081 0.919 7 C -0.162 4.162 8 N -0.698 5.698 9 C 0.533 3.467 10 O -0.559 6.559 11 C -0.112 4.112 12 C -0.013 4.013 13 C -0.114 4.114 14 C -0.067 4.067 15 C -0.151 4.151 16 C 0.131 3.869 17 C -0.123 4.123 18 N -0.657 5.657 19 C 0.528 3.472 20 O -0.516 6.516 21 C -0.112 4.112 22 N -0.716 5.716 23 C -0.223 4.223 24 H 0.067 0.933 25 C -0.011 4.011 26 N -0.935 5.935 27 Si 0.896 3.104 28 H -0.283 1.283 29 H -0.294 1.294 30 H -0.290 1.290 31 H 0.035 0.965 32 H 0.045 0.955 33 H 0.052 0.948 34 H 0.072 0.928 35 H 0.064 0.936 36 H 0.052 0.948 37 H 0.056 0.944 38 H 0.058 0.942 39 H 0.405 0.595 40 H 0.134 0.866 41 H 0.093 0.907 42 H 0.133 0.867 43 H 0.127 0.873 44 H 0.122 0.878 45 H 0.411 0.589 46 H 0.120 0.880 47 H 0.120 0.880 48 H 0.378 0.622 49 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.902 -0.965 -6.274 9.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.060 3.940 3 H 0.066 0.934 4 C -0.172 4.172 5 C 0.045 3.955 6 H 0.100 0.900 7 C -0.220 4.220 8 N -0.350 5.350 9 C 0.320 3.680 10 O -0.438 6.438 11 C -0.151 4.151 12 C -0.014 4.014 13 C -0.133 4.133 14 C -0.085 4.085 15 C -0.154 4.154 16 C 0.035 3.965 17 C -0.144 4.144 18 N -0.300 5.300 19 C 0.317 3.683 20 O -0.392 6.392 21 C -0.151 4.151 22 N -0.359 5.359 23 C -0.354 4.354 24 H 0.085 0.915 25 C -0.206 4.206 26 N -0.585 5.585 27 Si 0.728 3.272 28 H -0.208 1.208 29 H -0.221 1.221 30 H -0.218 1.218 31 H 0.054 0.946 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.090 0.910 35 H 0.082 0.918 36 H 0.071 0.929 37 H 0.075 0.925 38 H 0.077 0.923 39 H 0.242 0.758 40 H 0.152 0.848 41 H 0.112 0.888 42 H 0.151 0.849 43 H 0.145 0.855 44 H 0.140 0.860 45 H 0.248 0.752 46 H 0.138 0.862 47 H 0.138 0.862 48 H 0.213 0.787 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 8.044 -0.148 -6.585 10.397 hybrid contribution -0.299 -0.576 0.861 1.078 sum 7.745 -0.724 -5.724 9.658 Atomic orbital electron populations 1.22424 0.99342 1.00714 0.99916 1.20278 0.91622 0.95725 0.86417 0.93444 1.22202 0.94110 1.01574 0.99326 1.20764 0.92405 0.97276 0.85006 0.90042 1.22205 1.01678 1.00760 0.97387 1.45948 1.17847 1.37656 1.33560 1.20142 0.81247 0.83361 0.83277 1.90641 1.62172 1.31179 1.59826 1.20799 0.93961 0.99716 1.00654 1.19137 0.93391 0.94642 0.94224 1.21098 0.97357 0.96316 0.98499 1.20202 0.90528 0.99115 0.98696 1.19681 0.94596 0.99556 1.01540 1.17986 0.85406 0.96618 0.96523 1.20140 0.89084 1.02496 1.02711 1.43676 1.06036 1.36490 1.43835 1.20640 0.85200 0.81544 0.80940 1.90796 1.14025 1.70590 1.63814 1.21001 0.92029 1.00814 1.01251 1.42464 1.77910 1.10169 1.05371 1.19265 1.35148 0.93781 0.87236 0.91478 1.24556 1.02685 0.95930 0.97466 1.69598 1.51917 1.08277 1.28700 0.86280 0.77429 0.78966 0.84575 1.20845 1.22113 1.21757 0.94606 0.93611 0.92898 0.90950 0.91774 0.92881 0.92510 0.92279 0.75763 0.84810 0.88839 0.84896 0.85492 0.86021 0.75179 0.86193 0.86235 0.78686 0.93631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.68 9.49 37.16 0.35 -2.33 16 2 C 0.17 2.97 2.89 -67.94 -0.20 2.77 16 3 H 0.05 0.90 8.08 -51.93 -0.42 0.49 16 4 C -0.13 -1.88 4.43 -26.73 -0.12 -2.00 16 5 C 0.15 2.28 2.57 -67.93 -0.17 2.10 16 6 H 0.08 1.43 7.58 -51.93 -0.39 1.04 16 7 C -0.16 -2.07 9.48 37.16 0.35 -1.72 16 8 N -0.70 -11.48 3.80 -53.81 -0.20 -11.68 16 9 C 0.53 9.58 7.79 -10.99 -0.09 9.49 16 10 O -0.56 -11.55 15.70 5.56 0.09 -11.46 16 11 C -0.11 -1.81 5.82 -29.04 -0.17 -1.98 16 12 C -0.01 -0.20 4.36 -104.71 -0.46 -0.66 16 13 C -0.11 -1.78 9.71 -39.50 -0.38 -2.16 16 14 C -0.07 -0.89 10.04 -39.73 -0.40 -1.29 16 15 C -0.15 -1.91 6.35 -104.37 -0.66 -2.58 16 16 C 0.13 1.71 7.11 -83.69 -0.60 1.12 16 17 C -0.12 -1.70 9.71 -39.27 -0.38 -2.08 16 18 N -0.66 -7.64 5.88 -9.70 -0.06 -7.70 16 19 C 0.53 6.68 8.71 -10.82 -0.09 6.59 16 20 O -0.52 -8.02 18.03 5.55 0.10 -7.92 16 21 C -0.11 -1.17 6.88 -28.48 -0.20 -1.37 16 22 N -0.72 -15.04 3.84 -53.43 -0.21 -15.24 16 23 C -0.22 -5.43 9.93 -15.06 -0.15 -5.58 16 24 H 0.07 1.69 7.83 -52.49 -0.41 1.28 16 25 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 26 N -0.93 -23.37 12.78 55.49 0.71 -22.66 16 27 Si 0.90 20.49 29.55 -169.99 -5.02 15.47 16 28 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 29 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 30 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 31 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.40 6.72 6.51 -40.82 -0.27 6.46 16 40 H 0.13 2.51 7.81 -51.93 -0.41 2.11 16 41 H 0.09 1.28 8.08 -51.93 -0.42 0.86 16 42 H 0.13 2.20 8.06 -52.49 -0.42 1.77 16 43 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 44 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 45 H 0.41 3.91 8.96 -40.82 -0.37 3.54 16 46 H 0.12 1.08 8.14 -51.93 -0.42 0.66 16 47 H 0.12 1.03 8.14 -51.93 -0.42 0.60 16 48 H 0.38 8.10 5.70 -40.82 -0.23 7.87 16 49 H 0.25 6.33 8.31 -40.82 -0.34 5.99 16 LS Contribution 406.13 15.07 6.12 6.12 Total: -1.00 -29.25 406.13 -9.47 -38.72 By element: Atomic # 1 Polarization: 25.93 SS G_CDS: -7.54 Total: 18.39 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: -3.45 Total: -2.03 kcal Atomic # 7 Polarization: -57.53 SS G_CDS: 0.24 Total: -57.28 kcal Atomic # 8 Polarization: -19.57 SS G_CDS: 0.19 Total: -19.38 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -29.25 -9.47 -38.72 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134639064.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.549 kcal (2) G-P(sol) polarization free energy of solvation -29.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds