Wall clock time and date at job start Wed Apr 1 2020 04:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47005 * 2 1 4 4 C 1.52999 * 109.46885 * 240.00723 * 2 1 3 5 5 C 1.52999 * 109.47451 * 174.99977 * 4 2 1 6 6 H 1.09002 * 109.46716 * 304.99789 * 5 4 2 7 7 C 1.52997 * 109.47317 * 184.99880 * 5 4 2 8 8 N 1.46500 * 109.46944 * 64.99440 * 5 4 2 9 9 C 1.34780 * 119.99910 * 205.00356 * 8 5 4 10 10 O 1.21281 * 119.99723 * 0.02562 * 9 8 5 11 11 C 1.50693 * 120.00182 * 180.02562 * 9 8 5 12 12 C 1.50699 * 109.47318 * 179.97438 * 11 9 8 13 13 C 1.38305 * 119.81190 * 89.99500 * 12 11 9 14 14 C 1.38393 * 119.82390 * 179.97438 * 13 12 11 15 15 C 1.37678 * 119.91716 * 0.02562 * 14 13 12 16 16 C 1.38902 * 120.80573 * 0.02562 * 15 14 13 17 17 C 1.37936 * 119.81297 * 269.72268 * 12 11 9 18 18 N 1.39527 * 110.22872 * 179.97438 * 16 15 14 19 19 C 1.34367 * 112.24734 * 0.02562 * 18 16 15 20 20 O 1.21291 * 126.44656 * 180.02562 * 19 18 16 21 21 C 1.51130 * 132.84927 * 179.97438 * 15 14 13 22 22 N 1.46489 * 109.47481 * 120.00408 * 2 1 3 23 23 C 1.36939 * 120.00024 * 275.00064 * 22 2 1 24 24 H 1.07992 * 120.00021 * 359.97438 * 23 22 2 25 25 C 1.38814 * 119.99873 * 179.97438 * 23 22 2 26 26 N 1.31624 * 119.99946 * 0.02562 * 25 23 22 27 27 Si 1.86801 * 119.99928 * 179.97438 * 25 23 22 28 28 H 1.48492 * 109.47208 * 0.02562 * 27 25 23 29 29 H 1.48504 * 109.46978 * 120.00487 * 27 25 23 30 30 H 1.48505 * 109.47199 * 240.00277 * 27 25 23 31 31 H 1.08995 * 109.47875 * 59.99426 * 1 2 3 32 32 H 1.09005 * 109.47529 * 180.02562 * 1 2 3 33 33 H 1.09007 * 109.47202 * 299.99410 * 1 2 3 34 34 H 1.08998 * 109.47348 * 54.99095 * 4 2 1 35 35 H 1.09000 * 109.46961 * 294.99610 * 4 2 1 36 36 H 1.09002 * 109.47153 * 299.99641 * 7 5 4 37 37 H 1.09001 * 109.46832 * 179.97438 * 7 5 4 38 38 H 1.09004 * 109.47261 * 59.99813 * 7 5 4 39 39 H 0.96994 * 119.99975 * 25.00733 * 8 5 4 40 40 H 1.09007 * 109.46680 * 299.99959 * 11 9 8 41 41 H 1.09000 * 109.47439 * 59.99224 * 11 9 8 42 42 H 1.08001 * 120.08785 * 359.97438 * 13 12 11 43 43 H 1.07997 * 120.03957 * 179.97438 * 14 13 12 44 44 H 1.08002 * 119.93296 * 359.97438 * 17 12 11 45 45 H 0.97001 * 123.88053 * 179.97438 * 18 16 15 46 46 H 1.08997 * 110.51576 * 298.68152 * 21 15 14 47 47 H 1.08998 * 110.51234 * 61.40009 * 21 15 14 48 48 H 0.97001 * 120.00333 * 94.99644 * 22 2 1 49 49 H 0.97001 * 119.99698 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2493 5 6 3.5647 -0.6132 -1.3139 6 1 3.8570 0.4359 -1.2679 7 6 4.0643 -1.2248 -2.6243 8 7 4.1536 -1.3342 -0.1827 9 6 5.3747 -0.9911 0.2730 10 8 5.9858 -0.0852 -0.2531 11 6 5.9808 -1.7330 1.4363 12 6 7.3396 -1.1592 1.7451 13 6 7.4570 -0.1163 2.6460 14 6 8.7048 0.4104 2.9302 15 6 9.8239 -0.1046 2.3154 16 6 9.7190 -1.1512 1.4082 17 6 8.4597 -1.6808 1.1321 18 7 10.9804 -1.4964 0.9219 19 6 11.9547 -0.7374 1.4510 20 8 13.1408 -0.8164 1.2098 21 6 11.2936 0.2363 2.4034 22 7 2.0184 -0.6906 1.1960 23 6 2.1492 -0.0076 2.3756 24 1 1.8927 1.0403 2.4241 25 6 2.6115 -0.6622 3.5091 26 7 2.9246 -1.9393 3.4498 27 14 2.7906 0.2697 5.1181 28 1 2.3766 1.6821 4.9208 29 1 1.9296 -0.3582 6.1523 30 1 4.2076 0.2259 5.5604 31 1 -0.3635 0.5139 -0.8898 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8901 34 1 1.6052 -0.2616 -2.1370 35 1 1.7516 -1.7714 -1.2057 36 1 3.7721 -2.2739 -2.6703 37 1 5.1506 -1.1475 -2.6704 38 1 3.6261 -0.6883 -3.4660 39 1 3.6647 -2.0584 0.2383 40 1 5.3355 -1.6299 2.3088 41 1 6.0815 -2.7880 1.1816 42 1 6.5773 0.2859 3.1263 43 1 8.8005 1.2251 3.6327 44 1 8.3603 -2.4984 0.4335 45 1 11.1361 -2.2036 0.2765 46 1 11.4674 1.2632 2.0820 47 1 11.6606 0.0854 3.4186 48 1 2.2491 -1.6318 1.1524 49 1 3.2480 -2.3966 4.2418 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134639064.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:56 Heat of formation + Delta-G solvation = -50.194557 kcal Electronic energy + Delta-G solvation = -30801.599174 eV Core-core repulsion = 26727.887273 eV Total energy + Delta-G solvation = -4073.711901 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.42636 -40.80461 -39.49984 -38.26252 -36.90006 -35.68405 -34.04868 -33.79013 -32.24719 -30.93181 -30.59511 -30.07903 -27.58493 -27.02353 -25.52134 -23.76076 -22.97675 -22.41525 -21.64329 -21.56561 -20.78793 -19.05238 -18.77083 -17.83027 -17.71553 -17.13246 -17.03204 -16.70684 -16.46280 -16.13725 -15.60347 -15.45151 -15.33474 -15.07812 -14.76006 -14.69614 -14.25210 -14.19767 -14.07763 -13.72915 -13.52755 -13.35168 -13.29037 -13.18693 -12.93439 -12.85887 -12.77189 -12.56763 -12.51513 -12.23925 -12.07236 -11.89986 -11.80253 -11.67011 -11.55359 -11.36465 -11.34062 -10.83223 -10.66261 -9.73414 -9.67219 -9.01528 -8.76893 -7.80267 -5.02450 0.16268 0.34757 1.38887 1.48989 1.54967 1.58528 1.92834 1.97323 2.50506 2.64969 2.88910 3.09779 3.43210 3.53108 3.82138 3.84725 3.89672 4.04048 4.19626 4.24925 4.29651 4.36622 4.43978 4.46909 4.49199 4.58007 4.61576 4.73696 4.83342 4.86285 4.89233 4.90747 4.96029 5.00952 5.11626 5.15813 5.17936 5.19900 5.39500 5.40062 5.45598 5.51787 5.64849 5.67329 5.71334 5.73748 5.88821 6.03280 6.42580 6.84460 6.89268 7.51739 7.55149 8.23005 8.51568 9.40924 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011587 B = 0.003370 C = 0.002757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2415.856182 B = 8307.337168 C =10151.745343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.163 3.837 3 H 0.027 0.973 4 C -0.120 4.120 5 C 0.148 3.852 6 H 0.053 0.947 7 C -0.151 4.151 8 N -0.693 5.693 9 C 0.528 3.472 10 O -0.590 6.590 11 C -0.103 4.103 12 C -0.031 4.031 13 C -0.139 4.139 14 C -0.065 4.065 15 C -0.149 4.149 16 C 0.128 3.872 17 C -0.126 4.126 18 N -0.649 5.649 19 C 0.527 3.473 20 O -0.547 6.547 21 C -0.104 4.104 22 N -0.718 5.718 23 C -0.225 4.225 24 H 0.053 0.947 25 C -0.046 4.046 26 N -0.942 5.942 27 Si 0.935 3.065 28 H -0.286 1.286 29 H -0.301 1.301 30 H -0.291 1.291 31 H 0.067 0.933 32 H 0.048 0.952 33 H 0.028 0.972 34 H 0.104 0.896 35 H 0.076 0.924 36 H 0.068 0.932 37 H 0.038 0.962 38 H 0.081 0.919 39 H 0.405 0.595 40 H 0.106 0.894 41 H 0.116 0.884 42 H 0.112 0.888 43 H 0.151 0.849 44 H 0.138 0.862 45 H 0.420 0.580 46 H 0.141 0.859 47 H 0.145 0.855 48 H 0.376 0.624 49 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.198 -1.262 -7.450 10.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.054 3.946 3 H 0.045 0.955 4 C -0.158 4.158 5 C 0.043 3.957 6 H 0.071 0.929 7 C -0.209 4.209 8 N -0.344 5.344 9 C 0.315 3.685 10 O -0.472 6.472 11 C -0.142 4.142 12 C -0.032 4.032 13 C -0.158 4.158 14 C -0.083 4.083 15 C -0.152 4.152 16 C 0.031 3.969 17 C -0.146 4.146 18 N -0.292 5.292 19 C 0.317 3.683 20 O -0.426 6.426 21 C -0.142 4.142 22 N -0.361 5.361 23 C -0.357 4.357 24 H 0.071 0.929 25 C -0.240 4.240 26 N -0.593 5.593 27 Si 0.768 3.232 28 H -0.211 1.211 29 H -0.229 1.229 30 H -0.218 1.218 31 H 0.085 0.915 32 H 0.067 0.933 33 H 0.047 0.953 34 H 0.122 0.878 35 H 0.095 0.905 36 H 0.087 0.913 37 H 0.057 0.943 38 H 0.100 0.900 39 H 0.242 0.758 40 H 0.124 0.876 41 H 0.134 0.866 42 H 0.130 0.870 43 H 0.169 0.831 44 H 0.156 0.844 45 H 0.259 0.741 46 H 0.159 0.841 47 H 0.163 0.837 48 H 0.211 0.789 49 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 8.297 -0.452 -7.793 11.392 hybrid contribution -0.428 -0.439 1.188 1.337 sum 7.869 -0.891 -6.604 10.312 Atomic orbital electron populations 1.22284 0.97882 1.00975 1.00304 1.20465 0.92559 0.94867 0.86698 0.95450 1.22113 0.93075 1.02065 0.98558 1.20869 0.93210 0.95833 0.85802 0.92892 1.22094 1.00544 1.01828 0.96442 1.46003 1.17325 1.37370 1.33729 1.20460 0.81524 0.83043 0.83453 1.90611 1.63060 1.32527 1.61004 1.20680 0.93941 1.00927 0.98682 1.19152 0.93543 0.95343 0.95179 1.21093 0.97838 0.97317 0.99532 1.20375 0.89689 0.99387 0.98846 1.19929 0.95649 0.98948 1.00658 1.18061 0.85571 0.96705 0.96570 1.20228 0.88860 1.02856 1.02701 1.43642 1.05344 1.36540 1.43684 1.20941 0.84780 0.81682 0.80923 1.90788 1.15250 1.71561 1.64985 1.21086 0.89847 1.01199 1.02105 1.42491 1.78085 1.10005 1.05539 1.19312 1.34450 0.93331 0.88631 0.92898 1.24916 1.03455 0.96599 0.99003 1.69657 1.52482 1.08571 1.28619 0.85653 0.76972 0.78004 0.82576 1.21144 1.22913 1.21785 0.91455 0.93327 0.95291 0.87752 0.90522 0.91290 0.94261 0.90012 0.75768 0.87554 0.86616 0.87009 0.83115 0.84391 0.74134 0.84125 0.83717 0.78906 0.94121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.81 9.49 71.98 0.68 -4.12 16 2 C 0.16 5.58 2.89 44.99 0.13 5.71 16 3 H 0.03 1.05 8.08 -2.38 -0.02 1.03 16 4 C -0.12 -3.11 4.43 30.59 0.14 -2.98 16 5 C 0.15 4.33 2.57 44.99 0.12 4.44 16 6 H 0.05 1.87 7.58 -2.39 -0.02 1.86 16 7 C -0.15 -3.54 9.48 71.98 0.68 -2.86 16 8 N -0.69 -22.82 3.80 -442.54 -1.68 -24.50 16 9 C 0.53 19.37 7.79 87.65 0.68 20.06 16 10 O -0.59 -25.01 15.70 -3.03 -0.05 -25.06 16 11 C -0.10 -3.42 5.82 29.10 0.17 -3.25 16 12 C -0.03 -0.98 4.36 -19.92 -0.09 -1.07 16 13 C -0.14 -4.45 9.71 22.32 0.22 -4.23 16 14 C -0.06 -1.66 10.04 22.17 0.22 -1.44 16 15 C -0.15 -3.52 6.35 -19.70 -0.13 -3.64 16 16 C 0.13 3.17 7.11 38.35 0.27 3.44 16 17 C -0.13 -3.39 9.71 22.47 0.22 -3.17 16 18 N -0.65 -14.04 5.88 -303.21 -1.78 -15.82 16 19 C 0.53 12.35 8.71 87.94 0.77 13.11 16 20 O -0.55 -16.26 18.03 -3.06 -0.06 -16.32 16 21 C -0.10 -1.89 6.88 29.46 0.20 -1.69 16 22 N -0.72 -30.31 3.84 -322.96 -1.24 -31.55 16 23 C -0.22 -11.17 9.93 84.03 0.83 -10.34 16 24 H 0.05 2.74 7.83 -2.91 -0.02 2.72 16 25 C -0.05 -2.31 5.50 84.86 0.47 -1.85 16 26 N -0.94 -47.76 12.78 21.65 0.28 -47.48 16 27 Si 0.94 42.88 29.55 68.60 2.03 44.91 16 28 H -0.29 -13.09 7.11 99.48 0.71 -12.39 16 29 H -0.30 -14.11 7.11 99.48 0.71 -13.41 16 30 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 31 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.05 1.48 8.14 -2.38 -0.02 1.46 16 33 H 0.03 1.01 8.14 -2.38 -0.02 0.99 16 34 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.08 1.55 8.14 -2.38 -0.02 1.53 16 39 H 0.40 13.37 6.51 -92.71 -0.60 12.77 16 40 H 0.11 4.18 7.81 -2.38 -0.02 4.16 16 41 H 0.12 3.18 8.08 -2.39 -0.02 3.16 16 42 H 0.11 3.96 8.06 -2.91 -0.02 3.94 16 43 H 0.15 3.02 8.06 -2.91 -0.02 3.00 16 44 H 0.14 3.14 8.06 -2.91 -0.02 3.12 16 45 H 0.42 7.37 8.96 -92.71 -0.83 6.54 16 46 H 0.14 2.07 8.14 -2.39 -0.02 2.05 16 47 H 0.15 1.99 8.14 -2.39 -0.02 1.97 16 48 H 0.38 16.10 5.70 -92.71 -0.53 15.58 16 49 H 0.25 12.61 8.31 -92.71 -0.77 11.83 16 Total: -1.00 -64.39 406.13 2.11 -62.28 By element: Atomic # 1 Polarization: 48.38 SS G_CDS: -0.98 Total: 47.40 kcal Atomic # 6 Polarization: 0.55 SS G_CDS: 5.59 Total: 6.14 kcal Atomic # 7 Polarization: -114.92 SS G_CDS: -4.43 Total: -119.35 kcal Atomic # 8 Polarization: -41.28 SS G_CDS: -0.10 Total: -41.38 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Total: -64.39 2.11 -62.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134639064.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.090 kcal (2) G-P(sol) polarization free energy of solvation -64.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds