Wall clock time and date at job start Wed Apr 1 2020 04:16:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47033 * 2 1 4 4 C 1.52997 * 109.47264 * 239.99923 * 2 1 3 5 5 C 1.53006 * 109.46841 * 174.99605 * 4 2 1 6 6 H 1.09000 * 109.47128 * 55.00806 * 5 4 2 7 7 C 1.53005 * 109.46558 * 175.00091 * 5 4 2 8 8 N 1.46498 * 109.47329 * 295.00084 * 5 4 2 9 9 C 1.34775 * 119.99607 * 155.00046 * 8 5 4 10 10 O 1.21549 * 120.00485 * 0.02562 * 9 8 5 11 11 C 1.47863 * 119.99735 * 180.02562 * 9 8 5 12 12 C 1.39614 * 119.97617 * 359.71947 * 11 9 8 13 13 C 1.38082 * 119.69115 * 179.76877 * 12 11 9 14 14 C 1.37847 * 120.10970 * 0.49187 * 13 12 11 15 15 C 1.39030 * 121.04097 * 359.76167 * 14 13 12 16 16 C 1.39128 * 119.09001 * 359.97438 * 15 14 13 17 17 N 1.39577 * 110.21788 * 180.02562 * 15 14 13 18 18 C 1.46501 * 123.88092 * 179.97438 * 17 15 14 19 19 C 1.34355 * 112.24664 * 0.02562 * 17 15 14 20 20 O 1.21298 * 126.42771 * 179.97438 * 19 17 15 21 21 C 1.51193 * 132.66279 * 179.76494 * 14 13 12 22 22 N 1.46498 * 109.46890 * 119.99923 * 2 1 3 23 23 C 1.36935 * 120.00239 * 275.00034 * 22 2 1 24 24 H 1.08004 * 120.00069 * 0.02562 * 23 22 2 25 25 C 1.38811 * 120.00368 * 180.02562 * 23 22 2 26 26 N 1.31624 * 119.99540 * 359.72375 * 25 23 22 27 27 Si 1.86800 * 120.00451 * 180.02562 * 25 23 22 28 28 H 1.48501 * 109.46758 * 269.72270 * 27 25 23 29 29 H 1.48499 * 109.47026 * 29.72118 * 27 25 23 30 30 H 1.48496 * 109.47474 * 149.72153 * 27 25 23 31 31 H 1.08994 * 109.47214 * 299.99506 * 1 2 3 32 32 H 1.08994 * 109.47102 * 60.00064 * 1 2 3 33 33 H 1.09005 * 109.47033 * 180.02562 * 1 2 3 34 34 H 1.08996 * 109.47554 * 295.00148 * 4 2 1 35 35 H 1.09001 * 109.46960 * 55.00369 * 4 2 1 36 36 H 1.08999 * 109.47043 * 60.01027 * 7 5 4 37 37 H 1.09001 * 109.46484 * 180.02562 * 7 5 4 38 38 H 1.08994 * 109.47185 * 300.00100 * 7 5 4 39 39 H 0.97002 * 120.00037 * 335.00467 * 8 5 4 40 40 H 1.08007 * 120.14958 * 359.97438 * 12 11 9 41 41 H 1.08003 * 119.94563 * 180.22972 * 13 12 11 42 42 H 1.07999 * 119.99059 * 179.97438 * 16 15 14 43 43 H 1.09003 * 109.46633 * 89.99909 * 18 17 15 44 44 H 1.08994 * 109.47190 * 209.99813 * 18 17 15 45 45 H 1.08998 * 109.46824 * 330.00624 * 18 17 15 46 46 H 1.08999 * 110.50525 * 61.34266 * 21 14 13 47 47 H 1.09004 * 110.61745 * 298.70886 * 21 14 13 48 48 H 0.97004 * 119.99747 * 95.00774 * 22 2 1 49 49 H 0.97000 * 120.00481 * 0.27542 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5649 -0.6131 -1.3136 6 1 3.9955 -0.9922 -0.3868 7 6 4.0852 -1.4382 -2.4924 8 7 3.9479 0.7895 -1.4924 9 6 5.1611 1.2137 -1.0866 10 8 5.9377 0.4324 -0.5727 11 6 5.5476 2.6295 -1.2665 12 6 4.6575 3.5253 -1.8621 13 6 5.0226 4.8472 -2.0228 14 6 6.2642 5.2773 -1.6061 15 6 7.1662 4.3993 -1.0158 16 6 6.8014 3.0674 -0.8464 17 7 8.3444 5.0696 -0.6830 18 6 9.4963 4.4282 -0.0443 19 6 8.3004 6.3708 -1.0147 20 8 9.1799 7.1882 -0.8422 21 6 6.9479 6.6253 -1.6450 22 7 2.0183 -0.6906 1.1962 23 6 2.1490 -0.0075 2.3758 24 1 1.8918 1.0403 2.4244 25 6 2.6122 -0.6617 3.5091 26 7 2.9205 -1.9400 3.4511 27 14 2.7899 0.2699 5.1184 28 1 4.1540 0.8503 5.2062 29 1 1.7835 1.3605 5.1727 30 1 2.5735 -0.6603 6.2554 31 1 -0.3633 0.5137 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 1.7517 -1.7715 -1.2056 35 1 1.6054 -0.2617 -2.1369 36 1 3.6547 -1.0591 -3.4193 37 1 5.1716 -1.3615 -2.5380 38 1 3.8002 -2.4818 -2.3594 39 1 3.3284 1.4130 -1.9027 40 1 3.6867 3.1864 -2.1925 41 1 4.3359 5.5445 -2.4797 42 1 7.4909 2.3727 -0.3899 43 1 10.1703 4.0457 -0.8108 44 1 10.0229 5.1573 0.5715 45 1 9.1528 3.6045 0.5814 46 1 6.3868 7.3550 -1.0613 47 1 7.0632 6.9677 -2.6735 48 1 2.2490 -1.6318 1.1526 49 1 2.8279 -2.4240 2.6156 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134903081.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:54 Heat of formation + Delta-G solvation = -24.591121 kcal Electronic energy + Delta-G solvation = -30348.294059 eV Core-core repulsion = 26275.692406 eV Total energy + Delta-G solvation = -4072.601653 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.83074 -39.93214 -38.40622 -36.97185 -36.04912 -34.67684 -33.38227 -32.36946 -30.96630 -30.54363 -28.48288 -28.27741 -26.96208 -26.41230 -23.58764 -23.26322 -22.84237 -21.35834 -20.87449 -20.03138 -19.91489 -18.08131 -17.34035 -17.15295 -16.68370 -16.63449 -16.00777 -15.32428 -14.97960 -14.77722 -14.58880 -14.34550 -14.14994 -14.03388 -13.93529 -13.66914 -13.56844 -13.34968 -13.19926 -13.02615 -12.70955 -12.42354 -12.37138 -12.16995 -12.09660 -11.72269 -11.71751 -11.40524 -11.06119 -10.73506 -10.68948 -10.51053 -10.48592 -10.44910 -10.11502 -9.97174 -9.75852 -9.18669 -9.12196 -8.87312 -8.79984 -8.27544 -6.97904 -6.03895 -3.03411 0.55045 0.93681 2.06817 2.37460 2.88971 3.26786 3.54034 3.59532 3.72353 3.72740 3.75838 3.97555 4.44447 4.63399 4.71356 4.73139 4.86607 4.94458 4.96444 4.98313 5.05454 5.07762 5.29563 5.35105 5.35825 5.36713 5.44795 5.57954 5.65026 5.69855 5.78948 5.84845 5.90783 5.96321 6.03011 6.04570 6.17680 6.19715 6.26287 6.30845 6.36211 6.45213 6.57904 6.70497 6.73015 6.83253 6.99186 7.53948 7.67624 7.85594 8.40464 8.81497 9.28368 10.14474 10.28929 11.44658 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010001 B = 0.003100 C = 0.002708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2798.909252 B = 9028.899399 C =10338.656808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.177 3.823 3 H 0.047 0.953 4 C -0.133 4.133 5 C 0.145 3.855 6 H 0.103 0.897 7 C -0.161 4.161 8 N -0.708 5.708 9 C 0.558 3.442 10 O -0.526 6.526 11 C -0.088 4.088 12 C -0.105 4.105 13 C -0.072 4.072 14 C -0.124 4.124 15 C 0.134 3.866 16 C -0.077 4.077 17 N -0.551 5.551 18 C 0.075 3.925 19 C 0.525 3.475 20 O -0.506 6.506 21 C -0.114 4.114 22 N -0.731 5.731 23 C -0.325 4.325 24 H 0.061 0.939 25 C -0.043 4.043 26 N -0.944 5.944 27 Si 1.078 2.922 28 H -0.296 1.296 29 H -0.296 1.296 30 H -0.288 1.288 31 H 0.053 0.947 32 H 0.035 0.965 33 H 0.044 0.956 34 H 0.075 0.925 35 H 0.063 0.937 36 H 0.051 0.949 37 H 0.057 0.943 38 H 0.064 0.936 39 H 0.394 0.606 40 H 0.135 0.865 41 H 0.136 0.864 42 H 0.140 0.860 43 H 0.068 0.932 44 H 0.085 0.915 45 H 0.084 0.916 46 H 0.126 0.874 47 H 0.125 0.875 48 H 0.365 0.635 49 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.190 13.209 -17.051 21.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.067 3.933 3 H 0.065 0.935 4 C -0.172 4.172 5 C 0.041 3.959 6 H 0.121 0.879 7 C -0.220 4.220 8 N -0.360 5.360 9 C 0.344 3.656 10 O -0.403 6.403 11 C -0.092 4.092 12 C -0.125 4.125 13 C -0.090 4.090 14 C -0.128 4.128 15 C 0.038 3.962 16 C -0.099 4.099 17 N -0.273 5.273 18 C -0.067 4.067 19 C 0.315 3.685 20 O -0.381 6.381 21 C -0.153 4.153 22 N -0.374 5.374 23 C -0.456 4.456 24 H 0.079 0.921 25 C -0.241 4.241 26 N -0.590 5.590 27 Si 0.910 3.090 28 H -0.224 1.224 29 H -0.223 1.223 30 H -0.214 1.214 31 H 0.072 0.928 32 H 0.054 0.946 33 H 0.063 0.937 34 H 0.093 0.907 35 H 0.082 0.918 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.083 0.917 39 H 0.229 0.771 40 H 0.152 0.848 41 H 0.154 0.846 42 H 0.158 0.842 43 H 0.087 0.913 44 H 0.103 0.897 45 H 0.103 0.897 46 H 0.144 0.856 47 H 0.143 0.857 48 H 0.199 0.801 49 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 5.781 13.181 -14.876 20.699 hybrid contribution -0.761 0.077 -1.687 1.852 sum 5.021 13.258 -16.563 21.801 Atomic orbital electron populations 1.22444 0.99459 1.00743 0.99891 1.20157 0.91555 0.95531 0.86061 0.93489 1.22203 0.93709 1.02241 0.99015 1.21039 0.95091 0.79942 0.99854 0.87884 1.22189 1.01637 1.00152 0.97991 1.45849 1.16120 1.11749 1.62244 1.18050 0.82301 0.86948 0.78322 1.90805 1.51137 1.55858 1.42520 1.19725 0.94461 0.94135 1.00883 1.21225 0.99256 0.92820 0.99187 1.20161 0.94185 0.95595 0.99108 1.19972 0.95180 0.94771 1.02837 1.17998 0.86389 0.93146 0.98664 1.20403 0.96623 0.92571 1.00303 1.45727 1.14644 1.09896 1.57075 1.21899 0.87199 0.99212 0.98361 1.20623 0.89263 0.80924 0.77710 1.90790 1.43546 1.48639 1.55101 1.21097 0.93423 0.96474 1.04322 1.42402 1.79128 1.09658 1.06254 1.19975 1.41663 0.94888 0.89117 0.92072 1.25651 0.99505 0.97489 1.01470 1.70841 1.51529 1.08212 1.28398 0.83259 0.75784 0.74192 0.75808 1.22429 1.22282 1.21438 0.92830 0.94587 0.93666 0.90656 0.91835 0.92970 0.92402 0.91691 0.77094 0.84772 0.84597 0.84176 0.91334 0.89677 0.89741 0.85623 0.85690 0.80131 0.93378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.82 9.49 37.16 0.35 -2.46 16 2 C 0.18 3.25 2.84 -67.93 -0.19 3.06 16 3 H 0.05 0.89 7.56 -51.93 -0.39 0.50 16 4 C -0.13 -1.91 4.29 -26.73 -0.11 -2.03 16 5 C 0.14 2.22 2.52 -67.93 -0.17 2.05 16 6 H 0.10 2.11 7.05 -51.93 -0.37 1.74 16 7 C -0.16 -2.08 9.48 37.16 0.35 -1.73 16 8 N -0.71 -9.77 4.40 -54.74 -0.24 -10.01 16 9 C 0.56 8.91 7.74 -12.32 -0.10 8.81 16 10 O -0.53 -10.70 15.99 5.32 0.09 -10.61 16 11 C -0.09 -1.13 5.86 -105.05 -0.62 -1.74 16 12 C -0.11 -0.99 9.55 -39.13 -0.37 -1.36 16 13 C -0.07 -0.57 10.02 -39.78 -0.40 -0.97 16 14 C -0.12 -1.13 6.35 -104.23 -0.66 -1.79 16 15 C 0.13 1.48 6.69 -83.71 -0.56 0.92 16 16 C -0.08 -0.98 9.28 -38.86 -0.36 -1.34 16 17 N -0.55 -5.95 3.13 -120.65 -0.38 -6.33 16 18 C 0.07 0.67 10.76 59.85 0.64 1.32 16 19 C 0.53 5.81 8.23 -10.84 -0.09 5.72 16 20 O -0.51 -7.08 17.67 5.54 0.10 -6.98 16 21 C -0.11 -0.87 6.88 -28.46 -0.20 -1.06 16 22 N -0.73 -17.57 4.49 -53.43 -0.24 -17.81 16 23 C -0.33 -9.04 9.93 -15.06 -0.15 -9.19 16 24 H 0.06 1.70 7.83 -52.48 -0.41 1.29 16 25 C -0.04 -1.27 5.50 -17.43 -0.10 -1.37 16 26 N -0.94 -29.44 13.70 55.49 0.76 -28.68 16 27 Si 1.08 26.60 29.92 -169.99 -5.09 21.51 16 28 H -0.30 -7.23 7.11 56.52 0.40 -6.82 16 29 H -0.30 -6.86 7.11 56.52 0.40 -6.46 16 30 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 31 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.39 4.16 6.62 -40.82 -0.27 3.89 16 40 H 0.13 0.94 6.39 -52.48 -0.34 0.61 16 41 H 0.14 0.66 8.06 -52.48 -0.42 0.24 16 42 H 0.14 1.86 7.25 -52.49 -0.38 1.48 16 43 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.08 0.74 7.95 -51.93 -0.41 0.33 16 45 H 0.08 0.71 7.60 -51.93 -0.39 0.32 16 46 H 0.13 0.75 8.14 -51.93 -0.42 0.33 16 47 H 0.13 0.68 8.14 -51.93 -0.42 0.26 16 48 H 0.37 9.20 6.63 -40.82 -0.27 8.93 16 49 H 0.25 7.80 6.77 -40.82 -0.28 7.52 16 LS Contribution 405.30 15.07 6.11 6.11 Total: -1.00 -36.61 405.30 -9.00 -45.60 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: -7.38 Total: 10.37 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: -2.73 Total: -3.17 kcal Atomic # 7 Polarization: -62.74 SS G_CDS: -0.10 Total: -62.83 kcal Atomic # 8 Polarization: -17.77 SS G_CDS: 0.18 Total: -17.59 kcal Atomic # 14 Polarization: 26.60 SS G_CDS: -5.09 Total: 21.51 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -36.61 -9.00 -45.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134903081.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.014 kcal (2) G-P(sol) polarization free energy of solvation -36.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds