Wall clock time and date at job start Wed Apr 1 2020 04:16:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47033 * 2 1 4 4 C 1.52997 * 109.47264 * 239.99923 * 2 1 3 5 5 C 1.53006 * 109.46841 * 174.99605 * 4 2 1 6 6 H 1.09000 * 109.47128 * 55.00806 * 5 4 2 7 7 C 1.53005 * 109.46558 * 175.00091 * 5 4 2 8 8 N 1.46498 * 109.47329 * 295.00084 * 5 4 2 9 9 C 1.34775 * 119.99607 * 155.00046 * 8 5 4 10 10 O 1.21549 * 120.00485 * 0.02562 * 9 8 5 11 11 C 1.47863 * 119.99735 * 180.02562 * 9 8 5 12 12 C 1.39614 * 119.97617 * 359.71947 * 11 9 8 13 13 C 1.38082 * 119.69115 * 179.76877 * 12 11 9 14 14 C 1.37847 * 120.10970 * 0.49187 * 13 12 11 15 15 C 1.39030 * 121.04097 * 359.76167 * 14 13 12 16 16 C 1.39128 * 119.09001 * 359.97438 * 15 14 13 17 17 N 1.39577 * 110.21788 * 180.02562 * 15 14 13 18 18 C 1.46501 * 123.88092 * 179.97438 * 17 15 14 19 19 C 1.34355 * 112.24664 * 0.02562 * 17 15 14 20 20 O 1.21298 * 126.42771 * 179.97438 * 19 17 15 21 21 C 1.51193 * 132.66279 * 179.76494 * 14 13 12 22 22 N 1.46498 * 109.46890 * 119.99923 * 2 1 3 23 23 C 1.36935 * 120.00239 * 275.00034 * 22 2 1 24 24 H 1.08004 * 120.00069 * 0.02562 * 23 22 2 25 25 C 1.38811 * 120.00368 * 180.02562 * 23 22 2 26 26 N 1.31624 * 119.99540 * 359.72375 * 25 23 22 27 27 Si 1.86800 * 120.00451 * 180.02562 * 25 23 22 28 28 H 1.48501 * 109.46758 * 269.72270 * 27 25 23 29 29 H 1.48499 * 109.47026 * 29.72118 * 27 25 23 30 30 H 1.48496 * 109.47474 * 149.72153 * 27 25 23 31 31 H 1.08994 * 109.47214 * 299.99506 * 1 2 3 32 32 H 1.08994 * 109.47102 * 60.00064 * 1 2 3 33 33 H 1.09005 * 109.47033 * 180.02562 * 1 2 3 34 34 H 1.08996 * 109.47554 * 295.00148 * 4 2 1 35 35 H 1.09001 * 109.46960 * 55.00369 * 4 2 1 36 36 H 1.08999 * 109.47043 * 60.01027 * 7 5 4 37 37 H 1.09001 * 109.46484 * 180.02562 * 7 5 4 38 38 H 1.08994 * 109.47185 * 300.00100 * 7 5 4 39 39 H 0.97002 * 120.00037 * 335.00467 * 8 5 4 40 40 H 1.08007 * 120.14958 * 359.97438 * 12 11 9 41 41 H 1.08003 * 119.94563 * 180.22972 * 13 12 11 42 42 H 1.07999 * 119.99059 * 179.97438 * 16 15 14 43 43 H 1.09003 * 109.46633 * 89.99909 * 18 17 15 44 44 H 1.08994 * 109.47190 * 209.99813 * 18 17 15 45 45 H 1.08998 * 109.46824 * 330.00624 * 18 17 15 46 46 H 1.08999 * 110.50525 * 61.34266 * 21 14 13 47 47 H 1.09004 * 110.61745 * 298.70886 * 21 14 13 48 48 H 0.97004 * 119.99747 * 95.00774 * 22 2 1 49 49 H 0.97000 * 120.00481 * 0.27542 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5649 -0.6131 -1.3136 6 1 3.9955 -0.9922 -0.3868 7 6 4.0852 -1.4382 -2.4924 8 7 3.9479 0.7895 -1.4924 9 6 5.1611 1.2137 -1.0866 10 8 5.9377 0.4324 -0.5727 11 6 5.5476 2.6295 -1.2665 12 6 4.6575 3.5253 -1.8621 13 6 5.0226 4.8472 -2.0228 14 6 6.2642 5.2773 -1.6061 15 6 7.1662 4.3993 -1.0158 16 6 6.8014 3.0674 -0.8464 17 7 8.3444 5.0696 -0.6830 18 6 9.4963 4.4282 -0.0443 19 6 8.3004 6.3708 -1.0147 20 8 9.1799 7.1882 -0.8422 21 6 6.9479 6.6253 -1.6450 22 7 2.0183 -0.6906 1.1962 23 6 2.1490 -0.0075 2.3758 24 1 1.8918 1.0403 2.4244 25 6 2.6122 -0.6617 3.5091 26 7 2.9205 -1.9400 3.4511 27 14 2.7899 0.2699 5.1184 28 1 4.1540 0.8503 5.2062 29 1 1.7835 1.3605 5.1727 30 1 2.5735 -0.6603 6.2554 31 1 -0.3633 0.5137 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 1.7517 -1.7715 -1.2056 35 1 1.6054 -0.2617 -2.1369 36 1 3.6547 -1.0591 -3.4193 37 1 5.1716 -1.3615 -2.5380 38 1 3.8002 -2.4818 -2.3594 39 1 3.3284 1.4130 -1.9027 40 1 3.6867 3.1864 -2.1925 41 1 4.3359 5.5445 -2.4797 42 1 7.4909 2.3727 -0.3899 43 1 10.1703 4.0457 -0.8108 44 1 10.0229 5.1573 0.5715 45 1 9.1528 3.6045 0.5814 46 1 6.3868 7.3550 -1.0613 47 1 7.0632 6.9677 -2.6735 48 1 2.2490 -1.6318 1.1526 49 1 2.8279 -2.4240 2.6156 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134903081.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:53 Heat of formation + Delta-G solvation = -49.373955 kcal Electronic energy + Delta-G solvation = -30349.368723 eV Core-core repulsion = 26275.692406 eV Total energy + Delta-G solvation = -4073.676317 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.63526 -41.09155 -39.35924 -38.39756 -36.94792 -36.28132 -34.29005 -34.04447 -32.19819 -31.34972 -30.17351 -29.29543 -27.70659 -27.64374 -25.55287 -24.42252 -23.63488 -22.39739 -21.91950 -21.35023 -21.06816 -19.47451 -18.96533 -18.00217 -17.60186 -17.45850 -17.16885 -16.72908 -16.25380 -16.08140 -15.84421 -15.54741 -15.36886 -15.14831 -14.90377 -14.70327 -14.62984 -14.58192 -14.45205 -14.13410 -13.55813 -13.49148 -13.43942 -13.15954 -13.10066 -13.03804 -12.90727 -12.78946 -12.50966 -12.22801 -12.16746 -11.89782 -11.85387 -11.55688 -11.51504 -11.35930 -11.17055 -11.01648 -10.89764 -10.15166 -9.88542 -9.09516 -9.03295 -8.33188 -5.24501 -0.30082 0.12779 1.26964 1.52792 1.58648 1.63850 1.76711 1.85570 2.18313 2.71359 2.78489 3.03088 3.27166 3.45638 3.66739 3.72498 3.75506 3.89596 3.96814 4.06140 4.08894 4.18022 4.29750 4.31875 4.34252 4.48946 4.49225 4.61087 4.63196 4.73373 4.74393 4.75867 4.78241 4.84973 4.89084 4.97846 5.05024 5.16562 5.21808 5.24986 5.29327 5.36860 5.41620 5.54556 5.57622 5.59990 5.67027 5.93054 6.55222 6.57615 6.71898 7.17584 7.26519 8.08369 8.19108 9.19433 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010001 B = 0.003100 C = 0.002708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2798.909252 B = 9028.899399 C =10338.656808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.168 3.832 3 H 0.045 0.955 4 C -0.119 4.119 5 C 0.147 3.853 6 H 0.042 0.958 7 C -0.152 4.152 8 N -0.694 5.694 9 C 0.550 3.450 10 O -0.588 6.588 11 C -0.113 4.113 12 C -0.093 4.093 13 C -0.057 4.057 14 C -0.111 4.111 15 C 0.116 3.884 16 C -0.096 4.096 17 N -0.557 5.557 18 C 0.069 3.931 19 C 0.516 3.484 20 O -0.544 6.544 21 C -0.102 4.102 22 N -0.744 5.744 23 C -0.311 4.311 24 H 0.062 0.938 25 C -0.110 4.110 26 N -0.981 5.981 27 Si 1.119 2.881 28 H -0.296 1.296 29 H -0.269 1.269 30 H -0.293 1.293 31 H 0.027 0.973 32 H 0.081 0.919 33 H 0.039 0.961 34 H 0.075 0.925 35 H 0.113 0.887 36 H 0.086 0.914 37 H 0.036 0.964 38 H 0.069 0.931 39 H 0.414 0.586 40 H 0.164 0.836 41 H 0.183 0.817 42 H 0.115 0.885 43 H 0.077 0.923 44 H 0.085 0.915 45 H 0.081 0.919 46 H 0.152 0.848 47 H 0.157 0.843 48 H 0.355 0.645 49 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.419 16.319 -20.045 25.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.060 3.940 3 H 0.063 0.937 4 C -0.157 4.157 5 C 0.042 3.958 6 H 0.060 0.940 7 C -0.210 4.210 8 N -0.346 5.346 9 C 0.338 3.662 10 O -0.469 6.469 11 C -0.117 4.117 12 C -0.113 4.113 13 C -0.075 4.075 14 C -0.114 4.114 15 C 0.021 3.979 16 C -0.118 4.118 17 N -0.279 5.279 18 C -0.072 4.072 19 C 0.307 3.693 20 O -0.422 6.422 21 C -0.140 4.140 22 N -0.386 5.386 23 C -0.443 4.443 24 H 0.080 0.920 25 C -0.301 4.301 26 N -0.630 5.630 27 Si 0.946 3.054 28 H -0.224 1.224 29 H -0.194 1.194 30 H -0.220 1.220 31 H 0.046 0.954 32 H 0.100 0.900 33 H 0.059 0.941 34 H 0.094 0.906 35 H 0.131 0.869 36 H 0.105 0.895 37 H 0.055 0.945 38 H 0.088 0.912 39 H 0.252 0.748 40 H 0.182 0.818 41 H 0.201 0.799 42 H 0.133 0.867 43 H 0.096 0.904 44 H 0.104 0.896 45 H 0.100 0.900 46 H 0.169 0.831 47 H 0.174 0.826 48 H 0.187 0.813 49 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 2.930 16.329 -17.943 24.437 hybrid contribution 0.089 -0.842 -0.854 1.202 sum 3.019 15.488 -18.796 24.542 Atomic orbital electron populations 1.22296 0.97628 1.00772 1.00857 1.20487 0.92625 0.95294 0.85589 0.93727 1.22113 0.92565 1.02313 0.98736 1.20845 0.95694 0.80983 0.98275 0.93995 1.22090 1.00388 1.00228 0.98265 1.45700 1.15814 1.11579 1.61505 1.18673 0.82197 0.88089 0.77253 1.90771 1.52957 1.57765 1.45396 1.19562 0.95552 0.92861 1.03682 1.21568 0.99453 0.92881 0.97375 1.20620 0.93995 0.95422 0.97484 1.20341 0.95116 0.94914 1.01044 1.18057 0.87194 0.92885 0.99785 1.20286 0.96808 0.93235 1.01504 1.45923 1.14877 1.10264 1.56872 1.21969 0.87307 0.99189 0.98727 1.21279 0.90325 0.80370 0.77313 1.90768 1.45143 1.49425 1.56838 1.21196 0.90820 0.95948 1.06052 1.42638 1.79434 1.09352 1.07194 1.20281 1.38840 0.94891 0.90334 0.92019 1.26918 1.00463 0.97693 1.04999 1.70944 1.54643 1.09494 1.27969 0.82717 0.76322 0.73825 0.72525 1.22380 1.19426 1.21984 0.95410 0.89998 0.94131 0.90600 0.86883 0.89469 0.94477 0.91197 0.74787 0.81813 0.79936 0.86731 0.90447 0.89603 0.89994 0.83062 0.82568 0.81310 0.94611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.86 9.49 71.98 0.68 -4.18 16 2 C 0.17 5.88 2.84 44.99 0.13 6.01 16 3 H 0.04 1.59 7.56 -2.38 -0.02 1.57 16 4 C -0.12 -3.12 4.29 30.60 0.13 -2.98 16 5 C 0.15 4.46 2.52 45.00 0.11 4.57 16 6 H 0.04 1.82 7.05 -2.39 -0.02 1.81 16 7 C -0.15 -3.76 9.48 71.98 0.68 -3.07 16 8 N -0.69 -18.40 4.40 -445.38 -1.96 -20.36 16 9 C 0.55 18.13 7.74 86.79 0.67 18.80 16 10 O -0.59 -25.99 15.99 -3.87 -0.06 -26.05 16 11 C -0.11 -2.85 5.86 -20.14 -0.12 -2.97 16 12 C -0.09 -1.42 9.55 22.57 0.22 -1.20 16 13 C -0.06 -0.62 10.02 22.14 0.22 -0.39 16 14 C -0.11 -1.63 6.35 -19.61 -0.12 -1.76 16 15 C 0.12 2.51 6.69 38.31 0.26 2.76 16 16 C -0.10 -2.55 9.28 22.74 0.21 -2.34 16 17 N -0.56 -12.05 3.13 -654.24 -2.05 -14.10 16 18 C 0.07 1.35 10.76 127.77 1.38 2.72 16 19 C 0.52 10.78 8.23 87.94 0.72 11.50 16 20 O -0.54 -15.00 17.67 -3.09 -0.05 -15.05 16 21 C -0.10 -1.15 6.88 29.47 0.20 -0.95 16 22 N -0.74 -36.34 4.49 -322.94 -1.45 -37.79 16 23 C -0.31 -17.56 9.93 84.03 0.83 -16.73 16 24 H 0.06 3.41 7.83 -2.91 -0.02 3.39 16 25 C -0.11 -6.57 5.50 84.86 0.47 -6.10 16 26 N -0.98 -63.64 13.70 21.65 0.30 -63.34 16 27 Si 1.12 54.59 29.92 68.60 2.05 56.65 16 28 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 29 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 30 H -0.29 -14.44 7.11 99.48 0.71 -13.73 16 31 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.04 1.29 8.14 -2.38 -0.02 1.27 16 34 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.41 7.30 6.62 -92.71 -0.61 6.69 16 40 H 0.16 1.42 6.39 -2.91 -0.02 1.41 16 41 H 0.18 0.38 8.06 -2.91 -0.02 0.35 16 42 H 0.11 3.49 7.25 -2.91 -0.02 3.46 16 43 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 44 H 0.09 1.62 7.95 -2.39 -0.02 1.60 16 45 H 0.08 1.58 7.60 -2.39 -0.02 1.57 16 46 H 0.15 1.06 8.14 -2.39 -0.02 1.05 16 47 H 0.16 0.90 8.14 -2.38 -0.02 0.88 16 48 H 0.36 18.64 6.63 -92.71 -0.61 18.03 16 49 H 0.24 15.70 6.77 -92.71 -0.63 15.07 16 Total: -1.00 -87.73 405.30 3.34 -84.39 By element: Atomic # 1 Polarization: 32.08 SS G_CDS: -0.11 Total: 31.98 kcal Atomic # 6 Polarization: -2.99 SS G_CDS: 6.67 Total: 3.69 kcal Atomic # 7 Polarization: -130.43 SS G_CDS: -5.16 Total: -135.59 kcal Atomic # 8 Polarization: -40.99 SS G_CDS: -0.12 Total: -41.11 kcal Atomic # 14 Polarization: 54.59 SS G_CDS: 2.05 Total: 56.65 kcal Total: -87.73 3.34 -84.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134903081.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.018 kcal (2) G-P(sol) polarization free energy of solvation -87.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds