Wall clock time and date at job start Wed Apr 1 2020 04:15:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35840 * 116.99920 * 2 1 4 4 C 1.39467 * 119.74197 * 359.97438 * 3 2 1 5 5 C 1.36306 * 120.55754 * 180.02562 * 4 3 2 6 6 C 1.40196 * 119.90485 * 359.97438 * 5 4 3 7 7 C 1.41514 * 133.26068 * 179.97438 * 6 5 4 8 8 C 1.35919 * 107.75631 * 179.77358 * 7 6 5 9 9 C 1.46915 * 125.44438 * 180.22212 * 8 7 6 10 10 O 1.21668 * 120.00100 * 0.18537 * 9 8 7 11 11 N 1.34781 * 120.00157 * 180.17968 * 9 8 7 12 12 C 1.46501 * 120.00148 * 180.02562 * 11 9 8 13 13 H 1.09002 * 109.46889 * 324.99629 * 12 11 9 14 14 C 1.52995 * 109.47455 * 84.99508 * 12 11 9 15 15 C 1.52997 * 109.46873 * 204.99882 * 12 11 9 16 16 C 1.53006 * 109.47054 * 64.99956 * 15 12 11 17 17 H 1.08993 * 109.46789 * 304.99489 * 16 15 12 18 18 C 1.53002 * 109.46692 * 184.99580 * 16 15 12 19 19 N 1.46498 * 109.47152 * 64.99807 * 16 15 12 20 20 C 1.36933 * 119.99933 * 205.00030 * 19 16 15 21 21 H 1.07998 * 120.00324 * 359.97438 * 20 19 16 22 22 C 1.38816 * 120.00071 * 180.02562 * 20 19 16 23 23 N 1.31620 * 119.99969 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00069 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47109 * 59.99500 * 24 22 20 26 26 H 1.48503 * 109.47163 * 179.97438 * 24 22 20 27 27 H 1.48501 * 109.47364 * 299.99703 * 24 22 20 28 28 N 1.38313 * 109.11464 * 0.38009 * 8 7 6 29 29 H 0.97001 * 125.63365 * 179.88857 * 28 8 7 30 30 C 1.37522 * 108.74169 * 359.61708 * 28 8 7 31 31 C 1.38218 * 119.73767 * 180.02562 * 3 2 1 32 32 H 1.08996 * 109.47517 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.47444 * 300.00550 * 1 2 3 34 34 H 1.09004 * 109.46940 * 60.00270 * 1 2 3 35 35 H 1.07998 * 119.72413 * 359.97438 * 4 3 2 36 36 H 1.08000 * 120.04643 * 179.97438 * 5 4 3 37 37 H 1.08003 * 126.12278 * 0.02562 * 7 6 5 38 38 H 0.96998 * 120.00034 * 359.97438 * 11 9 8 39 39 H 1.09008 * 109.46674 * 59.99843 * 14 12 11 40 40 H 1.08996 * 109.47563 * 179.97438 * 14 12 11 41 41 H 1.08997 * 109.47655 * 300.00760 * 14 12 11 42 42 H 1.08999 * 109.46712 * 184.99637 * 15 12 11 43 43 H 1.08999 * 109.47596 * 304.99881 * 15 12 11 44 44 H 1.08993 * 109.47430 * 299.99517 * 18 16 15 45 45 H 1.09003 * 109.47034 * 60.00473 * 18 16 15 46 46 H 1.09003 * 109.46551 * 179.97438 * 18 16 15 47 47 H 0.97008 * 120.00131 * 25.00209 * 19 16 15 48 48 H 0.96999 * 120.00115 * 180.02562 * 23 22 20 49 49 H 1.07996 * 120.11560 * 0.02562 * 31 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2104 0.0000 4 6 1.2808 2.3766 -0.0005 5 6 1.8823 3.5998 -0.0011 6 6 3.2813 3.6908 -0.0005 7 6 4.1822 4.7821 -0.0013 8 6 5.4443 4.2777 0.0049 9 6 6.6796 5.0730 0.0110 10 8 6.6207 6.2882 0.0141 11 7 7.8781 4.4564 0.0133 12 6 9.1098 5.2494 0.0199 13 1 8.9617 6.1556 -0.5674 14 6 9.4656 5.6270 1.4592 15 6 10.2484 4.4280 -0.5882 16 6 9.9496 4.1566 -2.0641 17 1 8.9734 3.6806 -2.1555 18 6 11.0239 3.2320 -2.6402 19 7 9.9471 5.4219 -2.8025 20 6 9.2336 5.5343 -3.9658 21 1 8.6730 4.6901 -4.3393 22 6 9.2316 6.7330 -4.6658 23 7 9.9152 7.7618 -4.2111 24 14 8.2589 6.8861 -6.2532 25 1 6.8222 6.6276 -5.9802 26 1 8.4193 8.2567 -6.8018 27 1 8.7613 5.8958 -7.2392 28 7 5.3799 2.8961 0.0010 29 1 6.1411 2.2949 0.0025 30 6 4.0585 2.5153 0.0009 31 6 3.4263 1.2764 -0.0005 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3634 0.5139 0.8899 34 1 -0.3633 0.5138 -0.8901 35 1 0.2029 2.3100 -0.0014 36 1 1.2819 4.4975 -0.0019 37 1 3.9147 5.8285 -0.0022 38 1 7.9250 3.4875 0.0113 39 1 9.6138 4.7206 2.0465 40 1 10.3823 6.2166 1.4642 41 1 8.6545 6.2120 1.8926 42 1 11.1826 4.9830 -0.5027 43 1 10.3382 3.4813 -0.0557 44 1 12.0001 3.7081 -2.5488 45 1 11.0258 2.2906 -2.0908 46 1 10.8108 3.0384 -3.6915 47 1 10.4509 6.1801 -2.4674 48 1 9.9135 8.5995 -4.7000 49 1 4.0122 0.3692 -0.0014 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135148097.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:27 Heat of formation + Delta-G solvation = -9.835965 kcal Electronic energy + Delta-G solvation = -29966.189169 eV Core-core repulsion = 25894.227348 eV Total energy + Delta-G solvation = -4071.961821 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.68201 -39.82388 -39.07529 -36.85654 -35.84751 -34.51838 -32.26770 -32.14604 -30.94947 -29.74417 -28.84115 -28.56924 -27.14217 -26.35328 -24.24922 -23.56841 -22.24943 -21.55713 -20.79857 -20.10060 -19.75847 -18.72536 -18.13361 -17.14408 -16.56519 -16.02719 -15.89677 -15.77280 -15.35152 -15.14374 -14.70083 -14.17660 -14.01763 -13.94776 -13.81535 -13.68688 -13.51226 -13.27701 -13.00633 -12.72908 -12.51303 -12.27943 -12.15204 -12.10810 -11.97640 -11.75191 -11.63165 -11.06755 -11.00617 -10.97338 -10.79808 -10.62064 -10.45420 -10.24311 -9.91863 -9.86241 -9.73524 -9.59887 -8.86193 -8.82777 -8.36070 -7.66059 -6.90730 -5.70665 -2.98900 0.71022 1.39904 2.11393 2.59470 3.21142 3.29784 3.48341 3.52212 3.53260 3.53665 3.70900 4.47105 4.64651 4.71853 4.74168 4.82902 4.84051 4.98890 5.09432 5.14391 5.18373 5.25059 5.35009 5.40645 5.45319 5.62478 5.66051 5.70992 5.78192 5.85518 5.91275 5.98802 6.06734 6.09975 6.21652 6.26452 6.27809 6.33959 6.41637 6.53690 6.54905 6.65361 6.71929 6.78795 6.88906 7.05583 7.14867 7.26136 7.68048 7.73964 8.38028 8.47577 9.58975 10.15375 10.49648 11.51884 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010389 B = 0.002775 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2694.408687 B =10088.735822 C =11095.756558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.318 6.318 3 C 0.152 3.848 4 C -0.227 4.227 5 C -0.019 4.019 6 C -0.148 4.148 7 C -0.101 4.101 8 C 0.020 3.980 9 C 0.583 3.417 10 O -0.513 6.513 11 N -0.713 5.713 12 C 0.144 3.856 13 H 0.109 0.891 14 C -0.161 4.161 15 C -0.132 4.132 16 C 0.172 3.828 17 H 0.043 0.957 18 C -0.166 4.166 19 N -0.719 5.719 20 C -0.236 4.236 21 H 0.066 0.934 22 C -0.011 4.011 23 N -0.931 5.931 24 Si 0.903 3.097 25 H -0.286 1.286 26 H -0.291 1.291 27 H -0.288 1.288 28 N -0.576 5.576 29 H 0.418 0.582 30 C 0.150 3.850 31 C -0.176 4.176 32 H 0.098 0.902 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.129 0.871 36 H 0.130 0.870 37 H 0.156 0.844 38 H 0.388 0.612 39 H 0.049 0.951 40 H 0.066 0.934 41 H 0.057 0.943 42 H 0.078 0.922 43 H 0.060 0.940 44 H 0.046 0.954 45 H 0.033 0.967 46 H 0.052 0.948 47 H 0.383 0.617 48 H 0.255 0.745 49 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.968 -15.156 14.118 24.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.231 6.231 3 C 0.105 3.895 4 C -0.247 4.247 5 C -0.038 4.038 6 C -0.152 4.152 7 C -0.127 4.127 8 C -0.089 4.089 9 C 0.368 3.632 10 O -0.387 6.387 11 N -0.363 5.363 12 C 0.041 3.959 13 H 0.127 0.873 14 C -0.220 4.220 15 C -0.170 4.170 16 C 0.061 3.939 17 H 0.061 0.939 18 C -0.226 4.226 19 N -0.361 5.361 20 C -0.367 4.367 21 H 0.083 0.917 22 C -0.207 4.207 23 N -0.579 5.579 24 Si 0.734 3.266 25 H -0.213 1.213 26 H -0.217 1.217 27 H -0.214 1.214 28 N -0.181 5.181 29 H 0.256 0.744 30 C 0.039 3.961 31 C -0.198 4.198 32 H 0.117 0.883 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.147 0.853 36 H 0.148 0.852 37 H 0.174 0.826 38 H 0.221 0.779 39 H 0.068 0.932 40 H 0.085 0.915 41 H 0.076 0.924 42 H 0.096 0.904 43 H 0.079 0.921 44 H 0.065 0.935 45 H 0.052 0.948 46 H 0.071 0.929 47 H 0.217 0.783 48 H 0.065 0.935 49 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -13.843 -14.456 13.963 24.404 hybrid contribution -0.139 -0.400 -0.963 1.052 sum -13.982 -14.857 13.000 24.191 Atomic orbital electron populations 1.23057 0.78257 1.03840 1.01501 1.86023 1.21435 1.26912 1.88718 1.18463 0.91189 0.84048 0.95779 1.20748 0.99940 0.92017 1.11946 1.20220 0.92166 0.97301 0.94087 1.18153 0.93431 0.92530 1.11127 1.20885 0.89489 0.99079 1.03246 1.20312 0.95730 0.81599 1.11223 1.17067 0.81898 0.87143 0.77055 1.90883 1.86313 1.12465 1.49081 1.45876 1.05890 1.09474 1.75108 1.21095 0.82381 0.96403 0.96061 0.87296 1.22190 1.02005 1.01132 0.96642 1.22186 0.97993 0.99385 0.97458 1.20213 0.96032 0.88820 0.88786 0.93866 1.22464 1.00660 0.98223 1.01237 1.42374 1.58860 1.09024 1.25863 1.19086 1.22219 0.96603 0.98820 0.91651 1.24690 1.00661 0.96138 0.99180 1.69633 1.45476 1.02466 1.40344 0.86335 0.79960 0.76650 0.83660 1.21288 1.21691 1.21440 1.41924 1.06048 1.05926 1.64251 0.74424 1.17779 0.83491 0.94125 1.00703 1.18886 0.91548 0.95240 1.14113 0.88341 0.92573 0.92507 0.85299 0.85236 0.82619 0.77867 0.93167 0.91510 0.92368 0.90379 0.92108 0.93454 0.94796 0.92888 0.78302 0.93524 0.85260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.80 101.05 0.99 1.15 16 2 O -0.32 -3.08 10.48 -19.24 -0.20 -3.28 16 3 C 0.15 1.62 6.68 -39.13 -0.26 1.36 16 4 C -0.23 -2.18 8.95 -39.82 -0.36 -2.54 16 5 C -0.02 -0.20 10.05 -39.54 -0.40 -0.60 16 6 C -0.15 -1.90 6.16 -106.90 -0.66 -2.56 16 7 C -0.10 -1.44 10.53 -39.17 -0.41 -1.85 16 8 C 0.02 0.29 6.97 -82.26 -0.57 -0.29 16 9 C 0.58 9.82 7.76 -12.75 -0.10 9.72 16 10 O -0.51 -10.78 16.50 5.22 0.09 -10.69 16 11 N -0.71 -10.24 4.44 -55.04 -0.24 -10.48 16 12 C 0.14 2.28 2.52 -67.93 -0.17 2.11 16 13 H 0.11 2.28 7.05 -51.93 -0.37 1.91 16 14 C -0.16 -2.15 9.48 37.16 0.35 -1.80 16 15 C -0.13 -1.94 4.29 -26.73 -0.11 -2.06 16 16 C 0.17 3.20 2.84 -67.93 -0.19 3.01 16 17 H 0.04 0.83 7.56 -51.93 -0.39 0.43 16 18 C -0.17 -2.86 9.49 37.16 0.35 -2.50 16 19 N -0.72 -17.55 4.49 -53.43 -0.24 -17.79 16 20 C -0.24 -6.57 9.93 -15.06 -0.15 -6.72 16 21 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 22 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 23 N -0.93 -28.50 13.06 55.49 0.72 -27.77 16 24 Si 0.90 23.11 29.55 -169.99 -5.02 18.09 16 25 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 26 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 27 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 28 N -0.58 -6.68 6.08 -7.35 -0.04 -6.72 16 29 H 0.42 3.59 8.12 -40.82 -0.33 3.26 16 30 C 0.15 1.85 7.25 -83.98 -0.61 1.24 16 31 C -0.18 -1.97 10.00 -39.27 -0.39 -2.36 16 32 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.26 7.64 -51.93 -0.40 -0.14 16 34 H 0.06 0.28 7.64 -51.93 -0.40 -0.12 16 35 H 0.13 0.89 6.25 -52.49 -0.33 0.57 16 36 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 37 H 0.16 2.14 8.06 -52.48 -0.42 1.72 16 38 H 0.39 4.31 7.66 -40.82 -0.31 4.00 16 39 H 0.05 0.56 8.14 -51.92 -0.42 0.14 16 40 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 42 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 43 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 44 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 47 H 0.38 10.02 7.80 -40.82 -0.32 9.70 16 48 H 0.25 7.63 8.31 -40.82 -0.34 7.29 16 49 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 LS Contribution 407.45 15.07 6.14 6.14 Total: -1.00 -34.90 407.45 -9.05 -43.95 By element: Atomic # 1 Polarization: 21.11 SS G_CDS: -7.46 Total: 13.65 kcal Atomic # 6 Polarization: -2.31 SS G_CDS: -2.79 Total: -5.10 kcal Atomic # 7 Polarization: -62.96 SS G_CDS: 0.20 Total: -62.76 kcal Atomic # 8 Polarization: -13.86 SS G_CDS: -0.12 Total: -13.98 kcal Atomic # 14 Polarization: 23.11 SS G_CDS: -5.02 Total: 18.09 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -34.90 -9.05 -43.95 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135148097.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.119 kcal (2) G-P(sol) polarization free energy of solvation -34.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds