Wall clock time and date at job start Wed Apr 1 2020 04:15:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35840 * 116.99920 * 2 1 4 4 C 1.39467 * 119.74197 * 359.97438 * 3 2 1 5 5 C 1.36306 * 120.55754 * 180.02562 * 4 3 2 6 6 C 1.40196 * 119.90485 * 359.97438 * 5 4 3 7 7 C 1.41514 * 133.26068 * 179.97438 * 6 5 4 8 8 C 1.35919 * 107.75631 * 179.77358 * 7 6 5 9 9 C 1.46915 * 125.44438 * 180.22212 * 8 7 6 10 10 O 1.21668 * 120.00100 * 0.18537 * 9 8 7 11 11 N 1.34781 * 120.00157 * 180.17968 * 9 8 7 12 12 C 1.46501 * 120.00148 * 180.02562 * 11 9 8 13 13 H 1.09002 * 109.46889 * 324.99629 * 12 11 9 14 14 C 1.52995 * 109.47455 * 84.99508 * 12 11 9 15 15 C 1.52997 * 109.46873 * 204.99882 * 12 11 9 16 16 C 1.53006 * 109.47054 * 64.99956 * 15 12 11 17 17 H 1.08993 * 109.46789 * 304.99489 * 16 15 12 18 18 C 1.53002 * 109.46692 * 184.99580 * 16 15 12 19 19 N 1.46498 * 109.47152 * 64.99807 * 16 15 12 20 20 C 1.36933 * 119.99933 * 205.00030 * 19 16 15 21 21 H 1.07998 * 120.00324 * 359.97438 * 20 19 16 22 22 C 1.38816 * 120.00071 * 180.02562 * 20 19 16 23 23 N 1.31620 * 119.99969 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00069 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47109 * 59.99500 * 24 22 20 26 26 H 1.48503 * 109.47163 * 179.97438 * 24 22 20 27 27 H 1.48501 * 109.47364 * 299.99703 * 24 22 20 28 28 N 1.38313 * 109.11464 * 0.38009 * 8 7 6 29 29 H 0.97001 * 125.63365 * 179.88857 * 28 8 7 30 30 C 1.37522 * 108.74169 * 359.61708 * 28 8 7 31 31 C 1.38218 * 119.73767 * 180.02562 * 3 2 1 32 32 H 1.08996 * 109.47517 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.47444 * 300.00550 * 1 2 3 34 34 H 1.09004 * 109.46940 * 60.00270 * 1 2 3 35 35 H 1.07998 * 119.72413 * 359.97438 * 4 3 2 36 36 H 1.08000 * 120.04643 * 179.97438 * 5 4 3 37 37 H 1.08003 * 126.12278 * 0.02562 * 7 6 5 38 38 H 0.96998 * 120.00034 * 359.97438 * 11 9 8 39 39 H 1.09008 * 109.46674 * 59.99843 * 14 12 11 40 40 H 1.08996 * 109.47563 * 179.97438 * 14 12 11 41 41 H 1.08997 * 109.47655 * 300.00760 * 14 12 11 42 42 H 1.08999 * 109.46712 * 184.99637 * 15 12 11 43 43 H 1.08999 * 109.47596 * 304.99881 * 15 12 11 44 44 H 1.08993 * 109.47430 * 299.99517 * 18 16 15 45 45 H 1.09003 * 109.47034 * 60.00473 * 18 16 15 46 46 H 1.09003 * 109.46551 * 179.97438 * 18 16 15 47 47 H 0.97008 * 120.00131 * 25.00209 * 19 16 15 48 48 H 0.96999 * 120.00115 * 180.02562 * 23 22 20 49 49 H 1.07996 * 120.11560 * 0.02562 * 31 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2104 0.0000 4 6 1.2808 2.3766 -0.0005 5 6 1.8823 3.5998 -0.0011 6 6 3.2813 3.6908 -0.0005 7 6 4.1822 4.7821 -0.0013 8 6 5.4443 4.2777 0.0049 9 6 6.6796 5.0730 0.0110 10 8 6.6207 6.2882 0.0141 11 7 7.8781 4.4564 0.0133 12 6 9.1098 5.2494 0.0199 13 1 8.9617 6.1556 -0.5674 14 6 9.4656 5.6270 1.4592 15 6 10.2484 4.4280 -0.5882 16 6 9.9496 4.1566 -2.0641 17 1 8.9734 3.6806 -2.1555 18 6 11.0239 3.2320 -2.6402 19 7 9.9471 5.4219 -2.8025 20 6 9.2336 5.5343 -3.9658 21 1 8.6730 4.6901 -4.3393 22 6 9.2316 6.7330 -4.6658 23 7 9.9152 7.7618 -4.2111 24 14 8.2589 6.8861 -6.2532 25 1 6.8222 6.6276 -5.9802 26 1 8.4193 8.2567 -6.8018 27 1 8.7613 5.8958 -7.2392 28 7 5.3799 2.8961 0.0010 29 1 6.1411 2.2949 0.0025 30 6 4.0585 2.5153 0.0009 31 6 3.4263 1.2764 -0.0005 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3634 0.5139 0.8899 34 1 -0.3633 0.5138 -0.8901 35 1 0.2029 2.3100 -0.0014 36 1 1.2819 4.4975 -0.0019 37 1 3.9147 5.8285 -0.0022 38 1 7.9250 3.4875 0.0113 39 1 9.6138 4.7206 2.0465 40 1 10.3823 6.2166 1.4642 41 1 8.6545 6.2120 1.8926 42 1 11.1826 4.9830 -0.5027 43 1 10.3382 3.4813 -0.0557 44 1 12.0001 3.7081 -2.5488 45 1 11.0258 2.2906 -2.0908 46 1 10.8108 3.0384 -3.6915 47 1 10.4509 6.1801 -2.4674 48 1 9.9135 8.5995 -4.7000 49 1 4.0122 0.3692 -0.0014 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135148097.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:26 Heat of formation + Delta-G solvation = -33.757365 kcal Electronic energy + Delta-G solvation = -29967.226479 eV Core-core repulsion = 25894.227348 eV Total energy + Delta-G solvation = -4072.999131 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.63971 -40.84759 -40.07470 -38.32940 -36.69895 -36.12990 -34.05549 -33.12068 -32.29777 -30.63000 -30.44497 -29.67238 -27.76016 -27.61171 -25.71136 -25.20365 -23.18030 -22.55557 -21.99147 -21.26522 -21.24251 -19.69653 -19.28964 -18.95034 -17.54686 -16.99371 -16.70360 -16.66023 -16.60634 -16.38361 -16.19322 -15.66197 -15.50356 -15.22021 -14.90726 -14.75121 -14.58948 -14.47820 -14.26001 -14.09238 -13.62346 -13.41685 -13.25593 -13.16736 -12.95261 -12.89459 -12.80079 -12.78050 -12.67783 -12.28878 -12.24091 -11.85075 -11.73347 -11.72616 -11.58029 -11.45480 -11.24318 -10.91555 -10.67927 -10.12338 -9.22844 -8.95547 -8.57879 -7.92559 -5.17849 -0.25286 0.55796 1.06058 1.41482 1.45159 1.49985 1.71120 2.08309 2.32018 2.54139 2.55580 2.82770 3.41533 3.64334 3.71817 3.82697 3.99916 4.03043 4.05494 4.10636 4.27508 4.37087 4.38328 4.47682 4.48096 4.51058 4.52812 4.66483 4.76706 4.77146 4.81205 4.82826 4.90469 4.92423 5.01962 5.08721 5.20017 5.23599 5.31362 5.35056 5.39214 5.44273 5.48712 5.57588 5.59181 5.62463 5.84020 6.30588 6.35251 6.46262 6.54768 7.14222 7.36526 8.16544 8.36109 9.30818 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010389 B = 0.002775 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2694.408687 B =10088.735822 C =11095.756558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.331 6.331 3 C 0.154 3.846 4 C -0.221 4.221 5 C -0.024 4.024 6 C -0.171 4.171 7 C -0.111 4.111 8 C 0.001 3.999 9 C 0.579 3.421 10 O -0.568 6.568 11 N -0.699 5.699 12 C 0.146 3.854 13 H 0.051 0.949 14 C -0.152 4.152 15 C -0.118 4.118 16 C 0.163 3.837 17 H 0.040 0.960 18 C -0.156 4.156 19 N -0.731 5.731 20 C -0.227 4.227 21 H 0.067 0.933 22 C -0.077 4.077 23 N -0.967 5.967 24 Si 0.960 3.040 25 H -0.287 1.287 26 H -0.296 1.296 27 H -0.276 1.276 28 N -0.563 5.563 29 H 0.431 0.569 30 C 0.147 3.853 31 C -0.190 4.190 32 H 0.118 0.882 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.159 0.841 36 H 0.150 0.850 37 H 0.149 0.851 38 H 0.407 0.593 39 H 0.082 0.918 40 H 0.073 0.927 41 H 0.038 0.962 42 H 0.080 0.920 43 H 0.108 0.892 44 H 0.043 0.957 45 H 0.077 0.923 46 H 0.028 0.972 47 H 0.371 0.629 48 H 0.248 0.752 49 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.184 -18.623 15.051 28.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.244 6.244 3 C 0.107 3.893 4 C -0.240 4.240 5 C -0.042 4.042 6 C -0.176 4.176 7 C -0.138 4.138 8 C -0.108 4.108 9 C 0.367 3.633 10 O -0.447 6.447 11 N -0.349 5.349 12 C 0.042 3.958 13 H 0.069 0.931 14 C -0.210 4.210 15 C -0.156 4.156 16 C 0.055 3.945 17 H 0.058 0.942 18 C -0.216 4.216 19 N -0.371 5.371 20 C -0.359 4.359 21 H 0.085 0.915 22 C -0.269 4.269 23 N -0.618 5.618 24 Si 0.790 3.210 25 H -0.214 1.214 26 H -0.222 1.222 27 H -0.202 1.202 28 N -0.170 5.170 29 H 0.271 0.729 30 C 0.035 3.965 31 C -0.212 4.212 32 H 0.136 0.864 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.177 0.823 36 H 0.167 0.833 37 H 0.167 0.833 38 H 0.243 0.757 39 H 0.101 0.899 40 H 0.092 0.908 41 H 0.058 0.942 42 H 0.098 0.902 43 H 0.126 0.874 44 H 0.062 0.938 45 H 0.096 0.904 46 H 0.047 0.953 47 H 0.203 0.797 48 H 0.057 0.943 49 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -15.043 -18.048 14.911 27.827 hybrid contribution 0.085 0.495 -1.188 1.290 sum -14.958 -17.553 13.722 26.836 Atomic orbital electron populations 1.23392 0.76101 1.05650 1.02564 1.86020 1.23682 1.26392 1.88296 1.18676 0.91300 0.84874 0.94496 1.21073 1.01462 0.91131 1.10367 1.20519 0.91422 0.98724 0.93542 1.18355 0.94604 0.92113 1.12478 1.21023 0.90207 0.99418 1.03116 1.19925 0.94652 0.82806 1.13394 1.17408 0.83064 0.86716 0.76157 1.90847 1.87155 1.14837 1.51841 1.45725 1.04923 1.10361 1.73936 1.20919 0.83202 0.94702 0.96954 0.93095 1.22091 1.01508 1.02441 0.94948 1.22098 0.97259 1.01441 0.94849 1.20524 0.96558 0.86678 0.90747 0.94205 1.22309 0.99435 0.99674 1.00190 1.42573 1.58214 1.10854 1.25460 1.19423 1.20959 0.96169 0.99384 0.91524 1.25421 1.02647 0.96334 1.02508 1.69783 1.47671 1.02708 1.41663 0.85401 0.78518 0.76410 0.80647 1.21352 1.22203 1.20190 1.41740 1.06589 1.04830 1.63824 0.72883 1.17957 0.83479 0.94475 1.00555 1.19069 0.92225 0.95172 1.14723 0.86366 0.91282 0.91583 0.82329 0.83264 0.83328 0.75660 0.89891 0.90833 0.94243 0.90173 0.87365 0.93793 0.90438 0.95300 0.79741 0.94334 0.83968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.80 113.37 1.11 1.25 16 2 O -0.33 -5.51 10.48 -91.75 -0.96 -6.47 16 3 C 0.15 2.93 6.68 22.56 0.15 3.08 16 4 C -0.22 -3.67 8.95 22.12 0.20 -3.47 16 5 C -0.02 -0.46 10.05 22.29 0.22 -0.24 16 6 C -0.17 -4.35 6.16 -21.34 -0.13 -4.48 16 7 C -0.11 -3.28 10.53 22.54 0.24 -3.04 16 8 C 0.00 0.03 6.97 39.86 0.28 0.31 16 9 C 0.58 20.31 7.76 86.51 0.67 20.98 16 10 O -0.57 -25.59 16.50 -4.25 -0.07 -25.66 16 11 N -0.70 -19.86 4.44 -446.28 -1.98 -21.85 16 12 C 0.15 4.61 2.52 44.99 0.11 4.73 16 13 H 0.05 2.25 7.05 -2.39 -0.02 2.23 16 14 C -0.15 -3.91 9.48 71.98 0.68 -3.22 16 15 C -0.12 -3.24 4.29 30.60 0.13 -3.11 16 16 C 0.16 5.89 2.84 44.99 0.13 6.02 16 17 H 0.04 1.47 7.56 -2.39 -0.02 1.45 16 18 C -0.16 -5.03 9.49 71.98 0.68 -4.35 16 19 N -0.73 -36.31 4.49 -322.94 -1.45 -37.76 16 20 C -0.23 -12.88 9.93 84.03 0.83 -12.05 16 21 H 0.07 3.69 7.83 -2.91 -0.02 3.67 16 22 C -0.08 -4.60 5.50 84.86 0.47 -4.13 16 23 N -0.97 -61.38 13.06 21.65 0.28 -61.10 16 24 Si 0.96 48.65 29.55 68.60 2.03 50.67 16 25 H -0.29 -14.37 7.11 99.48 0.71 -13.67 16 26 H -0.30 -15.08 7.11 99.48 0.71 -14.37 16 27 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 28 N -0.56 -12.67 6.08 -177.18 -1.08 -13.75 16 29 H 0.43 6.76 8.12 -92.71 -0.75 6.01 16 30 C 0.15 3.47 7.25 39.11 0.28 3.76 16 31 C -0.19 -3.91 10.00 22.47 0.22 -3.69 16 32 H 0.12 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.07 0.39 7.64 -2.39 -0.02 0.37 16 34 H 0.07 0.42 7.64 -2.38 -0.02 0.41 16 35 H 0.16 1.60 6.25 -2.91 -0.02 1.59 16 36 H 0.15 2.22 8.06 -2.91 -0.02 2.20 16 37 H 0.15 4.42 8.06 -2.91 -0.02 4.40 16 38 H 0.41 8.29 7.66 -92.71 -0.71 7.58 16 39 H 0.08 1.60 8.14 -2.38 -0.02 1.58 16 40 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 41 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 43 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 44 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 45 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 46 H 0.03 1.04 8.14 -2.39 -0.02 1.03 16 47 H 0.37 20.09 7.80 -92.70 -0.72 19.37 16 48 H 0.25 15.42 8.31 -92.71 -0.77 14.65 16 49 H 0.14 2.45 8.06 -2.91 -0.02 2.42 16 Total: -1.00 -80.28 407.45 1.86 -78.42 By element: Atomic # 1 Polarization: 40.32 SS G_CDS: -1.19 Total: 39.13 kcal Atomic # 6 Polarization: -7.94 SS G_CDS: 6.29 Total: -1.65 kcal Atomic # 7 Polarization: -130.22 SS G_CDS: -4.23 Total: -134.45 kcal Atomic # 8 Polarization: -31.10 SS G_CDS: -1.03 Total: -32.13 kcal Atomic # 14 Polarization: 48.65 SS G_CDS: 2.03 Total: 50.67 kcal Total: -80.28 1.86 -78.42 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135148097.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.667 kcal (2) G-P(sol) polarization free energy of solvation -80.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds