Wall clock time and date at job start Wed Apr 1 2020 04:15:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35986 * 116.99901 * 2 1 4 4 C 1.39379 * 119.82273 * 359.97438 * 3 2 1 5 5 C 1.37591 * 120.60746 * 179.97438 * 4 3 2 6 6 C 1.39207 * 120.02451 * 0.08306 * 5 4 3 7 7 N 1.37679 * 133.03341 * 179.97438 * 6 5 4 8 8 H 0.96994 * 125.61416 * 0.02562 * 7 6 5 9 9 C 1.38118 * 108.77028 * 179.97438 * 7 6 5 10 10 C 1.47051 * 125.42669 * 179.97438 * 9 7 6 11 11 O 1.21646 * 119.99557 * 180.02562 * 10 9 7 12 12 N 1.34771 * 120.00147 * 0.03010 * 10 9 7 13 13 C 1.46502 * 120.00188 * 179.97438 * 12 10 9 14 14 H 1.09007 * 109.46822 * 325.00491 * 13 12 10 15 15 C 1.53004 * 109.47101 * 84.99834 * 13 12 10 16 16 C 1.52995 * 109.47556 * 205.00130 * 13 12 10 17 17 C 1.53006 * 109.47234 * 64.99886 * 16 13 12 18 18 H 1.09001 * 109.47002 * 55.00002 * 17 16 13 19 19 C 1.52997 * 109.47164 * 175.00265 * 17 16 13 20 20 N 1.46504 * 109.46883 * 295.00505 * 17 16 13 21 21 C 1.36937 * 119.99777 * 154.99950 * 20 17 16 22 22 H 1.08003 * 119.99797 * 359.97438 * 21 20 17 23 23 C 1.38806 * 120.00162 * 179.97438 * 21 20 17 24 24 N 1.31627 * 119.99952 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 120.00459 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.46792 * 0.02562 * 25 23 21 27 27 H 1.48494 * 109.47087 * 119.99807 * 25 23 21 28 28 H 1.48500 * 109.47309 * 240.00393 * 25 23 21 29 29 C 1.35882 * 109.14263 * 0.23036 * 9 7 6 30 30 C 1.40805 * 119.61413 * 359.93892 * 6 5 4 31 31 C 1.37839 * 119.82238 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.47476 * 300.00141 * 1 2 3 33 33 H 1.08999 * 109.46747 * 60.00524 * 1 2 3 34 34 H 1.09001 * 109.46466 * 180.02562 * 1 2 3 35 35 H 1.08002 * 119.69325 * 359.97438 * 4 3 2 36 36 H 1.08008 * 119.99066 * 180.02562 * 5 4 3 37 37 H 0.96999 * 120.00229 * 359.97438 * 12 10 9 38 38 H 1.09000 * 109.47236 * 300.00548 * 15 13 12 39 39 H 1.09007 * 109.46709 * 60.00055 * 15 13 12 40 40 H 1.08995 * 109.47171 * 179.97438 * 15 13 12 41 41 H 1.09007 * 109.46945 * 305.00388 * 16 13 12 42 42 H 1.08995 * 109.47339 * 184.99686 * 16 13 12 43 43 H 1.09000 * 109.47140 * 299.99948 * 19 17 16 44 44 H 1.09001 * 109.47375 * 59.99966 * 19 17 16 45 45 H 1.09002 * 109.46777 * 180.02562 * 19 17 16 46 46 H 0.96990 * 120.00057 * 334.99453 * 20 17 16 47 47 H 0.96993 * 120.00181 * 179.97438 * 24 23 21 48 48 H 1.08001 * 126.12423 * 179.77345 * 29 9 7 49 49 H 1.08000 * 120.16739 * 359.97438 * 31 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2117 0.0000 4 6 1.2836 2.3782 -0.0005 5 6 1.8914 3.6126 0.0000 6 6 3.2804 3.7051 -0.0007 7 7 4.1510 4.7717 -0.0009 8 1 3.8973 5.7079 -0.0002 9 6 5.4451 4.2891 -0.0010 10 6 6.6625 5.1139 -0.0018 11 8 7.7569 4.5829 -0.0024 12 7 6.5657 6.4582 -0.0018 13 6 7.7785 7.2800 -0.0020 14 1 8.5516 6.7868 0.5873 15 6 8.2710 7.4619 -1.4391 16 6 7.4676 8.6483 0.6077 17 6 7.0949 8.4771 2.0818 18 1 7.8918 7.9421 2.5983 19 6 6.9055 9.8532 2.7230 20 7 5.8483 7.7145 2.1849 21 6 5.5738 7.0016 3.3214 22 1 6.2765 7.0014 4.1416 23 6 4.3924 6.2794 3.4194 24 7 3.5363 6.2794 2.4196 25 14 4.0182 5.3064 4.9694 26 1 5.1328 5.4692 5.9371 27 1 2.7591 5.8076 5.5765 28 1 3.8651 3.8696 4.6271 29 6 5.4140 2.9306 -0.0061 30 6 4.0560 2.5299 -0.0006 31 6 3.4231 1.2796 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 -0.3632 -1.0277 0.0005 35 1 0.2056 2.3126 -0.0014 36 1 1.2906 4.5102 0.0000 37 1 5.6930 6.8816 -0.0017 38 1 8.4925 6.4871 -1.8735 39 1 7.4978 7.9550 -2.0284 40 1 9.1731 8.0737 -1.4393 41 1 6.6340 9.1035 0.0727 42 1 8.3450 9.2899 0.5270 43 1 7.8330 10.4206 2.6463 44 1 6.1085 10.3882 2.2066 45 1 6.6404 9.7312 3.7733 46 1 5.2174 7.7145 1.4482 47 1 2.7109 5.7745 2.4879 48 1 6.2716 2.2741 -0.0110 49 1 4.0111 0.3737 0.0014 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135320193.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:36 Heat of formation + Delta-G solvation = -4.808531 kcal Electronic energy + Delta-G solvation = -31438.594224 eV Core-core repulsion = 27366.850409 eV Total energy + Delta-G solvation = -4071.743815 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.04882 -39.39819 -38.69572 -36.84602 -35.20808 -34.28472 -32.40934 -31.67928 -30.81396 -29.00424 -28.70036 -28.24150 -26.64673 -26.41256 -23.91244 -23.71475 -21.71157 -21.12617 -20.39685 -20.23486 -19.41851 -17.99157 -17.34402 -17.21794 -16.67497 -15.84139 -15.53559 -15.48485 -14.91532 -14.69322 -14.32888 -13.94713 -13.74636 -13.62949 -13.37961 -13.31645 -12.95664 -12.84421 -12.81786 -12.73712 -12.34860 -12.21190 -11.98871 -11.82199 -11.77926 -11.73881 -11.70010 -11.09025 -10.89063 -10.80410 -10.46223 -10.41944 -10.28378 -10.21162 -9.98244 -9.76943 -9.56821 -9.39094 -9.04497 -8.53461 -7.53353 -7.11361 -7.03292 -5.94267 -3.15302 1.17762 2.05731 2.59928 3.39607 3.46515 3.47465 3.50425 3.50815 3.75040 4.03182 4.25681 4.53819 4.97096 5.01340 5.15652 5.19302 5.20884 5.29651 5.38237 5.44596 5.47016 5.48258 5.52888 5.60610 5.75593 5.79464 5.86512 5.89233 5.93172 5.97053 6.05816 6.16617 6.25490 6.29443 6.33108 6.36412 6.46942 6.51465 6.59832 6.66552 6.77734 6.86975 6.96150 7.02547 7.13541 7.37016 7.64066 7.72241 7.96773 8.15148 8.29661 8.70320 9.42195 9.92831 10.28870 11.30935 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011663 B = 0.003976 C = 0.003265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2400.177303 B = 7040.898740 C = 8574.335660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.324 6.324 3 C 0.084 3.916 4 C -0.179 4.179 5 C -0.079 4.079 6 C 0.096 3.904 7 N -0.532 5.532 8 H 0.427 0.573 9 C 0.056 3.944 10 C 0.594 3.406 11 O -0.544 6.544 12 N -0.694 5.694 13 C 0.150 3.850 14 H 0.086 0.914 15 C -0.163 4.163 16 C -0.134 4.134 17 C 0.168 3.832 18 H 0.049 0.951 19 C -0.163 4.163 20 N -0.716 5.716 21 C -0.226 4.226 22 H 0.068 0.932 23 C -0.004 4.004 24 N -0.937 5.937 25 Si 0.901 3.099 26 H -0.284 1.284 27 H -0.295 1.295 28 H -0.290 1.290 29 C -0.145 4.145 30 C -0.082 4.082 31 C -0.108 4.108 32 H 0.051 0.949 33 H 0.051 0.949 34 H 0.093 0.907 35 H 0.126 0.874 36 H 0.125 0.875 37 H 0.400 0.600 38 H 0.059 0.941 39 H 0.053 0.947 40 H 0.062 0.938 41 H 0.063 0.937 42 H 0.076 0.924 43 H 0.036 0.964 44 H 0.044 0.956 45 H 0.052 0.948 46 H 0.373 0.627 47 H 0.253 0.747 48 H 0.147 0.853 49 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.951 -1.478 -9.201 9.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.238 6.238 3 C 0.039 3.961 4 C -0.200 4.200 5 C -0.100 4.100 6 C -0.016 4.016 7 N -0.134 5.134 8 H 0.269 0.731 9 C -0.057 4.057 10 C 0.380 3.620 11 O -0.422 6.422 12 N -0.346 5.346 13 C 0.045 3.955 14 H 0.104 0.896 15 C -0.221 4.221 16 C -0.173 4.173 17 C 0.059 3.941 18 H 0.067 0.933 19 C -0.223 4.223 20 N -0.359 5.359 21 C -0.357 4.357 22 H 0.086 0.914 23 C -0.199 4.199 24 N -0.587 5.587 25 Si 0.733 3.267 26 H -0.209 1.209 27 H -0.222 1.222 28 H -0.217 1.217 29 C -0.172 4.172 30 C -0.087 4.087 31 C -0.128 4.128 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.111 0.889 35 H 0.143 0.857 36 H 0.142 0.858 37 H 0.237 0.763 38 H 0.078 0.922 39 H 0.072 0.928 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.094 0.906 43 H 0.055 0.945 44 H 0.063 0.937 45 H 0.072 0.928 46 H 0.208 0.792 47 H 0.063 0.937 48 H 0.165 0.835 49 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -1.054 -1.890 -9.023 9.279 hybrid contribution -1.476 0.349 1.032 1.834 sum -2.530 -1.541 -7.991 8.523 Atomic orbital electron populations 1.22932 0.79318 1.03162 1.01029 1.86030 1.20561 1.27181 1.90021 1.18472 0.91818 0.83713 1.02096 1.20826 0.99275 0.91539 1.08312 1.19843 0.90888 0.97490 1.01738 1.18143 0.91408 0.87112 1.04907 1.42035 1.03372 1.08618 1.59377 0.73078 1.20101 0.84116 0.93581 1.07944 1.17083 0.87073 0.81930 0.75879 1.90759 1.26914 1.72954 1.51580 1.45876 1.09796 1.05337 1.73541 1.20856 0.87725 0.91172 0.95702 0.89566 1.22216 1.00897 1.02073 0.96956 1.22220 1.01681 0.95493 0.97859 1.20306 0.90425 0.91464 0.91945 0.93265 1.22409 0.99355 0.98782 1.01760 1.42421 1.18715 1.56450 1.18322 1.19232 1.01860 1.20605 0.93965 0.91432 1.24437 0.96993 1.00647 0.97830 1.69371 1.11299 1.46745 1.31279 0.86194 0.77496 0.80102 0.82907 1.20909 1.22206 1.21726 1.20602 0.95417 0.92594 1.08633 1.17797 0.93135 0.91788 1.06021 1.19571 0.90897 0.96452 1.05888 0.93014 0.93074 0.88899 0.85661 0.85752 0.76330 0.92213 0.92826 0.91926 0.91801 0.90588 0.94524 0.93651 0.92844 0.79207 0.93698 0.83519 0.85651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 9.81 101.05 0.99 1.30 16 2 O -0.32 -4.66 10.49 -19.70 -0.21 -4.87 16 3 C 0.08 1.34 6.67 -39.30 -0.26 1.08 16 4 C -0.18 -2.68 9.01 -39.39 -0.35 -3.03 16 5 C -0.08 -1.29 10.06 -39.46 -0.40 -1.69 16 6 C 0.10 1.77 7.25 -83.91 -0.61 1.16 16 7 N -0.53 -9.79 5.46 -7.33 -0.04 -9.83 16 8 H 0.43 7.70 7.29 -40.82 -0.30 7.41 16 9 C 0.06 1.10 6.97 -82.30 -0.57 0.52 16 10 C 0.59 11.72 7.76 -12.69 -0.10 11.62 16 11 O -0.54 -11.89 16.50 5.24 0.09 -11.80 16 12 N -0.69 -11.87 3.80 -55.00 -0.21 -12.07 16 13 C 0.15 2.28 2.57 -67.93 -0.17 2.10 16 14 H 0.09 1.50 7.58 -51.93 -0.39 1.10 16 15 C -0.16 -2.06 9.48 37.16 0.35 -1.71 16 16 C -0.13 -1.87 4.43 -26.73 -0.12 -1.99 16 17 C 0.17 2.96 2.89 -67.93 -0.20 2.76 16 18 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 19 C -0.16 -2.66 9.49 37.16 0.35 -2.31 16 20 N -0.72 -15.16 3.84 -53.42 -0.21 -15.36 16 21 C -0.23 -5.65 9.93 -15.06 -0.15 -5.80 16 22 H 0.07 1.76 7.83 -52.48 -0.41 1.35 16 23 C 0.00 -0.10 5.50 -17.43 -0.10 -0.19 16 24 N -0.94 -23.22 11.59 55.49 0.64 -22.58 16 25 Si 0.90 22.11 29.55 -169.99 -5.02 17.08 16 26 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 27 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 28 H -0.29 -7.50 7.11 56.52 0.40 -7.09 16 29 C -0.15 -2.78 10.53 -39.15 -0.41 -3.20 16 30 C -0.08 -1.53 6.16 -106.93 -0.66 -2.19 16 31 C -0.11 -1.85 10.04 -39.01 -0.39 -2.25 16 32 H 0.05 0.49 7.65 -51.93 -0.40 0.09 16 33 H 0.05 0.44 7.65 -51.93 -0.40 0.05 16 34 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.13 1.50 6.26 -52.49 -0.33 1.17 16 36 H 0.12 1.81 8.06 -52.48 -0.42 1.39 16 37 H 0.40 6.75 5.56 -40.82 -0.23 6.52 16 38 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.05 0.62 8.14 -51.92 -0.42 0.20 16 40 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 46 H 0.37 7.94 5.70 -40.82 -0.23 7.70 16 47 H 0.25 6.41 8.31 -40.82 -0.34 6.07 16 48 H 0.15 2.63 8.06 -52.49 -0.42 2.21 16 49 H 0.13 1.94 8.06 -52.49 -0.42 1.52 16 LS Contribution 400.45 15.07 6.03 6.03 Total: -1.00 -28.68 400.45 -9.03 -37.71 By element: Atomic # 1 Polarization: 26.81 SS G_CDS: -7.31 Total: 19.50 kcal Atomic # 6 Polarization: -1.01 SS G_CDS: -2.80 Total: -3.81 kcal Atomic # 7 Polarization: -60.04 SS G_CDS: 0.19 Total: -59.85 kcal Atomic # 8 Polarization: -16.55 SS G_CDS: -0.12 Total: -16.67 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -28.68 -9.03 -37.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135320193.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.903 kcal (2) G-P(sol) polarization free energy of solvation -28.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds