Wall clock time and date at job start Wed Apr 1 2020 04:15:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35983 * 116.99793 * 2 1 4 4 C 1.39387 * 119.82547 * 359.97438 * 3 2 1 5 5 C 1.37600 * 120.60421 * 179.97438 * 4 3 2 6 6 C 1.39202 * 120.02594 * 359.97438 * 5 4 3 7 7 N 1.37679 * 133.03371 * 180.27119 * 6 5 4 8 8 H 0.97003 * 125.60811 * 359.97239 * 7 6 5 9 9 C 1.38111 * 108.77078 * 180.12481 * 7 6 5 10 10 C 1.47050 * 125.42822 * 179.88900 * 9 7 6 11 11 O 1.21646 * 120.00193 * 179.69495 * 10 9 7 12 12 N 1.34784 * 119.99945 * 359.69170 * 10 9 7 13 13 C 1.46493 * 119.99864 * 179.72725 * 12 10 9 14 14 H 1.09003 * 109.47333 * 324.99821 * 13 12 10 15 15 C 1.52999 * 109.47638 * 84.99998 * 13 12 10 16 16 C 1.53006 * 109.47135 * 204.99938 * 13 12 10 17 17 C 1.53002 * 109.46791 * 64.99692 * 16 13 12 18 18 H 1.09004 * 109.47034 * 304.99987 * 17 16 13 19 19 C 1.52999 * 109.46713 * 185.00334 * 17 16 13 20 20 N 1.46492 * 109.46999 * 65.00698 * 17 16 13 21 21 C 1.36938 * 119.99878 * 204.99676 * 20 17 16 22 22 H 1.08006 * 120.00294 * 359.97438 * 21 20 17 23 23 C 1.38816 * 120.00520 * 179.97438 * 21 20 17 24 24 N 1.31616 * 120.00324 * 179.97438 * 23 21 20 25 25 Si 1.86805 * 119.99345 * 0.02562 * 23 21 20 26 26 H 1.48494 * 109.47048 * 90.00222 * 25 23 21 27 27 H 1.48506 * 109.46565 * 209.99750 * 25 23 21 28 28 H 1.48493 * 109.47357 * 329.99674 * 25 23 21 29 29 C 1.35879 * 109.14305 * 359.62505 * 9 7 6 30 30 C 1.40816 * 119.61645 * 0.02562 * 6 5 4 31 31 C 1.37847 * 119.82095 * 179.97438 * 3 2 1 32 32 H 1.09008 * 109.47305 * 59.99733 * 1 2 3 33 33 H 1.08994 * 109.47443 * 180.02562 * 1 2 3 34 34 H 1.09002 * 109.47320 * 299.99854 * 1 2 3 35 35 H 1.07998 * 119.69578 * 359.95789 * 4 3 2 36 36 H 1.08003 * 119.98223 * 179.97438 * 5 4 3 37 37 H 0.97000 * 119.99339 * 0.02562 * 12 10 9 38 38 H 1.09003 * 109.46886 * 300.00173 * 15 13 12 39 39 H 1.09003 * 109.46903 * 59.99559 * 15 13 12 40 40 H 1.08994 * 109.47399 * 179.97438 * 15 13 12 41 41 H 1.08997 * 109.47235 * 184.99870 * 16 13 12 42 42 H 1.09002 * 109.46653 * 305.00416 * 16 13 12 43 43 H 1.09001 * 109.47123 * 180.02562 * 19 17 16 44 44 H 1.09001 * 109.47746 * 299.99964 * 19 17 16 45 45 H 1.09004 * 109.47346 * 60.00194 * 19 17 16 46 46 H 0.97003 * 120.00526 * 24.99567 * 20 17 16 47 47 H 0.96996 * 119.99827 * 179.97438 * 24 23 21 48 48 H 1.08001 * 126.12241 * 180.23532 * 29 9 7 49 49 H 1.08000 * 120.16176 * 0.04340 * 31 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2835 2.3783 -0.0005 5 6 1.8915 3.6127 0.0000 6 6 3.2804 3.7051 0.0016 7 7 4.1511 4.7717 0.0072 8 1 3.8973 5.7079 0.0109 9 6 5.4451 4.2890 0.0033 10 6 6.6625 5.1138 0.0048 11 8 7.7570 4.5827 0.0066 12 7 6.5658 6.4581 0.0043 13 6 7.7786 7.2797 0.0119 14 1 8.5479 6.7866 0.6062 15 6 8.2804 7.4618 -1.4220 16 6 7.4638 8.6482 0.6196 17 6 7.0815 8.4769 2.0911 18 1 6.2596 7.7656 2.1726 19 6 6.6467 9.8267 2.6655 20 7 8.2365 7.9766 2.8406 21 6 8.0478 7.2739 4.0007 22 1 7.0474 7.0889 4.3634 23 6 9.1422 6.7993 4.7107 24 7 8.9607 6.1244 5.8259 25 14 10.8724 7.1199 4.0838 26 1 11.3745 8.3983 4.6484 27 1 11.7645 6.0093 4.5034 28 1 10.8538 7.2068 2.6015 29 6 5.4140 2.9306 0.0036 30 6 4.0560 2.5299 0.0021 31 6 3.4231 1.2795 0.0005 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 -0.3634 0.5138 0.8900 35 1 0.2056 2.3127 -0.0016 36 1 1.2907 4.5102 -0.0009 37 1 5.6930 6.8815 0.0032 38 1 8.5047 6.4869 -1.8549 39 1 7.5111 7.9549 -2.0163 40 1 9.1825 8.0735 -1.4163 41 1 8.3417 9.2898 0.5445 42 1 6.6337 9.1033 0.0792 43 1 6.3748 9.7049 3.7139 44 1 7.4686 10.5381 2.5840 45 1 5.7873 10.1990 2.1078 46 1 9.1351 8.1430 2.5151 47 1 9.7254 5.7925 6.3218 48 1 6.2716 2.2741 0.0047 49 1 4.0111 0.3736 0.0002 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135320195.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:44 Heat of formation + Delta-G solvation = -5.330650 kcal Electronic energy + Delta-G solvation = -29984.940693 eV Core-core repulsion = 25913.174237 eV Total energy + Delta-G solvation = -4071.766456 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.67778 -39.78846 -39.09219 -37.03420 -35.74404 -34.68508 -32.42039 -32.15417 -31.05810 -29.55467 -29.29876 -28.80701 -27.07345 -26.48775 -24.38273 -23.30407 -22.25684 -21.54109 -20.86470 -20.16834 -19.90287 -18.67947 -17.79802 -17.61683 -17.17730 -16.08614 -15.91675 -15.88653 -15.21811 -14.83235 -14.75467 -14.29976 -14.09386 -13.94629 -13.81410 -13.63160 -13.32626 -13.27930 -13.09332 -12.87627 -12.67095 -12.44066 -12.25794 -12.16877 -12.09254 -12.02408 -11.78111 -11.29937 -10.94763 -10.93122 -10.73755 -10.70391 -10.54544 -10.30950 -9.99275 -9.98550 -9.96127 -9.55182 -8.96238 -8.90474 -8.13062 -7.70566 -7.24284 -5.72625 -3.08221 0.61231 1.47394 2.07226 2.78118 3.06480 3.24366 3.41823 3.44050 3.46240 3.50220 3.71167 4.46533 4.63663 4.65699 4.74272 4.81339 4.89979 4.94265 4.99562 5.16017 5.17871 5.20331 5.22203 5.28543 5.41041 5.46819 5.56617 5.69670 5.74703 5.75321 5.81074 5.82882 5.93681 6.05084 6.12046 6.15690 6.18949 6.25336 6.30665 6.36835 6.45343 6.55770 6.59925 6.73919 6.76917 6.93794 7.22268 7.28497 7.57798 8.01264 8.27725 8.45851 9.23857 9.96660 10.15241 11.45862 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012491 B = 0.002629 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2240.992942 B =10648.275122 C =11312.286803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.320 6.320 3 C 0.092 3.908 4 C -0.168 4.168 5 C -0.092 4.092 6 C 0.083 3.917 7 N -0.577 5.577 8 H 0.417 0.583 9 C 0.039 3.961 10 C 0.584 3.416 11 O -0.512 6.512 12 N -0.713 5.713 13 C 0.143 3.857 14 H 0.104 0.896 15 C -0.162 4.162 16 C -0.135 4.135 17 C 0.177 3.823 18 H 0.052 0.948 19 C -0.166 4.166 20 N -0.745 5.745 21 C -0.240 4.240 22 H 0.087 0.913 23 C 0.006 3.994 24 N -0.933 5.933 25 Si 0.883 3.117 26 H -0.286 1.286 27 H -0.291 1.291 28 H -0.276 1.276 29 C -0.117 4.117 30 C -0.077 4.077 31 C -0.101 4.101 32 H 0.052 0.948 33 H 0.097 0.903 34 H 0.053 0.947 35 H 0.132 0.868 36 H 0.126 0.874 37 H 0.390 0.610 38 H 0.059 0.941 39 H 0.052 0.948 40 H 0.065 0.935 41 H 0.077 0.923 42 H 0.066 0.934 43 H 0.057 0.943 44 H 0.045 0.955 45 H 0.037 0.963 46 H 0.360 0.640 47 H 0.259 0.741 48 H 0.158 0.842 49 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.436 -2.884 -17.788 25.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.234 6.234 3 C 0.047 3.953 4 C -0.188 4.188 5 C -0.112 4.112 6 C -0.026 4.026 7 N -0.182 5.182 8 H 0.255 0.745 9 C -0.071 4.071 10 C 0.369 3.631 11 O -0.386 6.386 12 N -0.364 5.364 13 C 0.039 3.961 14 H 0.122 0.878 15 C -0.221 4.221 16 C -0.174 4.174 17 C 0.067 3.933 18 H 0.070 0.930 19 C -0.226 4.226 20 N -0.388 5.388 21 C -0.370 4.370 22 H 0.105 0.895 23 C -0.190 4.190 24 N -0.581 5.581 25 Si 0.714 3.286 26 H -0.213 1.213 27 H -0.218 1.218 28 H -0.202 1.202 29 C -0.144 4.144 30 C -0.082 4.082 31 C -0.120 4.120 32 H 0.071 0.929 33 H 0.115 0.885 34 H 0.072 0.928 35 H 0.149 0.851 36 H 0.144 0.856 37 H 0.223 0.777 38 H 0.078 0.922 39 H 0.071 0.929 40 H 0.084 0.916 41 H 0.095 0.905 42 H 0.084 0.916 43 H 0.076 0.924 44 H 0.065 0.935 45 H 0.056 0.944 46 H 0.193 0.807 47 H 0.069 0.931 48 H 0.175 0.825 49 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -16.598 -3.417 -17.579 24.417 hybrid contribution 0.379 1.108 -0.143 1.179 sum -16.219 -2.309 -17.722 24.134 Atomic orbital electron populations 1.23003 0.78807 1.03713 1.01107 1.86078 1.20950 1.26718 1.89614 1.18546 0.91844 0.84026 1.00873 1.20943 0.99736 0.91415 1.06726 1.19805 0.90312 0.97808 1.03316 1.18230 0.91490 0.87002 1.05881 1.41886 1.04172 1.07742 1.64449 0.74536 1.20307 0.83420 0.94075 1.09316 1.17113 0.87178 0.81880 0.76932 1.90871 1.26467 1.72395 1.48912 1.45851 1.09780 1.05542 1.75200 1.21076 0.87396 0.91386 0.96204 0.87844 1.22197 1.01085 1.02178 0.96596 1.22239 1.02184 0.95437 0.97538 1.20187 0.91202 0.93646 0.88263 0.93015 1.22427 0.99387 0.99065 1.01703 1.42759 1.02476 1.66401 1.27151 1.18978 0.94765 1.26035 0.97235 0.89534 1.24650 0.97289 1.00036 0.96988 1.69693 1.29712 1.41826 1.16883 0.86567 0.86274 0.77407 0.78390 1.21295 1.21771 1.20229 1.20862 0.95870 0.92615 1.05082 1.17845 0.93053 0.91829 1.05457 1.19712 0.91108 0.96700 1.04520 0.92901 0.88478 0.92797 0.85058 0.85632 0.77661 0.92208 0.92899 0.91616 0.90464 0.91568 0.92370 0.93544 0.94440 0.80715 0.93110 0.82474 0.84847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.32 -3.34 10.49 -19.69 -0.21 -3.55 16 3 C 0.09 1.04 6.67 -39.30 -0.26 0.78 16 4 C -0.17 -1.59 9.01 -39.39 -0.35 -1.95 16 5 C -0.09 -0.89 10.06 -39.46 -0.40 -1.29 16 6 C 0.08 0.99 7.25 -83.91 -0.61 0.38 16 7 N -0.58 -6.45 6.08 -7.33 -0.04 -6.50 16 8 H 0.42 3.32 8.12 -40.82 -0.33 2.99 16 9 C 0.04 0.56 6.96 -82.31 -0.57 -0.02 16 10 C 0.58 9.53 7.76 -12.68 -0.10 9.43 16 11 O -0.51 -10.45 16.50 5.24 0.09 -10.36 16 12 N -0.71 -9.67 4.45 -55.00 -0.24 -9.92 16 13 C 0.14 2.11 2.52 -67.93 -0.17 1.93 16 14 H 0.10 2.00 7.06 -51.93 -0.37 1.64 16 15 C -0.16 -1.99 9.48 37.16 0.35 -1.63 16 16 C -0.14 -1.82 4.29 -26.73 -0.11 -1.94 16 17 C 0.18 3.10 2.84 -67.93 -0.19 2.91 16 18 H 0.05 0.95 7.56 -51.93 -0.39 0.56 16 19 C -0.17 -2.68 9.49 37.16 0.35 -2.33 16 20 N -0.74 -16.99 4.30 -53.43 -0.23 -17.22 16 21 C -0.24 -6.74 10.41 -15.06 -0.16 -6.90 16 22 H 0.09 2.63 8.06 -52.48 -0.42 2.20 16 23 C 0.01 0.18 5.50 -17.43 -0.10 0.09 16 24 N -0.93 -29.88 13.97 55.49 0.78 -29.10 16 25 Si 0.88 22.68 27.74 -169.99 -4.71 17.97 16 26 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 27 H -0.29 -7.68 7.11 56.52 0.40 -7.28 16 28 H -0.28 -6.68 6.52 56.52 0.37 -6.31 16 29 C -0.12 -1.71 10.53 -39.15 -0.41 -2.12 16 30 C -0.08 -1.03 6.16 -106.93 -0.66 -1.69 16 31 C -0.10 -1.25 10.04 -39.01 -0.39 -1.64 16 32 H 0.05 0.26 7.65 -51.92 -0.40 -0.13 16 33 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.05 0.29 7.65 -51.93 -0.40 -0.11 16 35 H 0.13 0.88 6.26 -52.49 -0.33 0.55 16 36 H 0.13 0.87 8.06 -52.48 -0.42 0.45 16 37 H 0.39 3.99 7.65 -40.82 -0.31 3.68 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.36 8.20 5.66 -40.82 -0.23 7.97 16 47 H 0.26 7.93 8.31 -40.82 -0.34 7.59 16 48 H 0.16 2.22 8.06 -52.49 -0.42 1.80 16 49 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 LS Contribution 404.46 15.07 6.10 6.10 Total: -1.00 -36.15 404.46 -8.70 -44.84 By element: Atomic # 1 Polarization: 19.97 SS G_CDS: -7.42 Total: 12.55 kcal Atomic # 6 Polarization: -2.02 SS G_CDS: -2.79 Total: -4.81 kcal Atomic # 7 Polarization: -62.99 SS G_CDS: 0.26 Total: -62.74 kcal Atomic # 8 Polarization: -13.79 SS G_CDS: -0.12 Total: -13.91 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -4.71 Total: 17.97 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -36.15 -8.70 -44.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135320195.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.513 kcal (2) G-P(sol) polarization free energy of solvation -36.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds