Wall clock time and date at job start Wed Apr 1 2020 04:15:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35983 * 116.99793 * 2 1 4 4 C 1.39387 * 119.82547 * 359.97438 * 3 2 1 5 5 C 1.37600 * 120.60421 * 179.97438 * 4 3 2 6 6 C 1.39202 * 120.02594 * 359.97438 * 5 4 3 7 7 N 1.37679 * 133.03371 * 180.27119 * 6 5 4 8 8 H 0.97003 * 125.60811 * 359.97239 * 7 6 5 9 9 C 1.38111 * 108.77078 * 180.12481 * 7 6 5 10 10 C 1.47050 * 125.42822 * 179.88900 * 9 7 6 11 11 O 1.21646 * 120.00193 * 179.69495 * 10 9 7 12 12 N 1.34784 * 119.99945 * 359.69170 * 10 9 7 13 13 C 1.46493 * 119.99864 * 179.72725 * 12 10 9 14 14 H 1.09003 * 109.47333 * 324.99821 * 13 12 10 15 15 C 1.52999 * 109.47638 * 84.99998 * 13 12 10 16 16 C 1.53006 * 109.47135 * 204.99938 * 13 12 10 17 17 C 1.53002 * 109.46791 * 64.99692 * 16 13 12 18 18 H 1.09004 * 109.47034 * 304.99987 * 17 16 13 19 19 C 1.52999 * 109.46713 * 185.00334 * 17 16 13 20 20 N 1.46492 * 109.46999 * 65.00698 * 17 16 13 21 21 C 1.36938 * 119.99878 * 204.99676 * 20 17 16 22 22 H 1.08006 * 120.00294 * 359.97438 * 21 20 17 23 23 C 1.38816 * 120.00520 * 179.97438 * 21 20 17 24 24 N 1.31616 * 120.00324 * 179.97438 * 23 21 20 25 25 Si 1.86805 * 119.99345 * 0.02562 * 23 21 20 26 26 H 1.48494 * 109.47048 * 90.00222 * 25 23 21 27 27 H 1.48506 * 109.46565 * 209.99750 * 25 23 21 28 28 H 1.48493 * 109.47357 * 329.99674 * 25 23 21 29 29 C 1.35879 * 109.14305 * 359.62505 * 9 7 6 30 30 C 1.40816 * 119.61645 * 0.02562 * 6 5 4 31 31 C 1.37847 * 119.82095 * 179.97438 * 3 2 1 32 32 H 1.09008 * 109.47305 * 59.99733 * 1 2 3 33 33 H 1.08994 * 109.47443 * 180.02562 * 1 2 3 34 34 H 1.09002 * 109.47320 * 299.99854 * 1 2 3 35 35 H 1.07998 * 119.69578 * 359.95789 * 4 3 2 36 36 H 1.08003 * 119.98223 * 179.97438 * 5 4 3 37 37 H 0.97000 * 119.99339 * 0.02562 * 12 10 9 38 38 H 1.09003 * 109.46886 * 300.00173 * 15 13 12 39 39 H 1.09003 * 109.46903 * 59.99559 * 15 13 12 40 40 H 1.08994 * 109.47399 * 179.97438 * 15 13 12 41 41 H 1.08997 * 109.47235 * 184.99870 * 16 13 12 42 42 H 1.09002 * 109.46653 * 305.00416 * 16 13 12 43 43 H 1.09001 * 109.47123 * 180.02562 * 19 17 16 44 44 H 1.09001 * 109.47746 * 299.99964 * 19 17 16 45 45 H 1.09004 * 109.47346 * 60.00194 * 19 17 16 46 46 H 0.97003 * 120.00526 * 24.99567 * 20 17 16 47 47 H 0.96996 * 119.99827 * 179.97438 * 24 23 21 48 48 H 1.08001 * 126.12241 * 180.23532 * 29 9 7 49 49 H 1.08000 * 120.16176 * 0.04340 * 31 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2835 2.3783 -0.0005 5 6 1.8915 3.6127 0.0000 6 6 3.2804 3.7051 0.0016 7 7 4.1511 4.7717 0.0072 8 1 3.8973 5.7079 0.0109 9 6 5.4451 4.2890 0.0033 10 6 6.6625 5.1138 0.0048 11 8 7.7570 4.5827 0.0066 12 7 6.5658 6.4581 0.0043 13 6 7.7786 7.2797 0.0119 14 1 8.5479 6.7866 0.6062 15 6 8.2804 7.4618 -1.4220 16 6 7.4638 8.6482 0.6196 17 6 7.0815 8.4769 2.0911 18 1 6.2596 7.7656 2.1726 19 6 6.6467 9.8267 2.6655 20 7 8.2365 7.9766 2.8406 21 6 8.0478 7.2739 4.0007 22 1 7.0474 7.0889 4.3634 23 6 9.1422 6.7993 4.7107 24 7 8.9607 6.1244 5.8259 25 14 10.8724 7.1199 4.0838 26 1 11.3745 8.3983 4.6484 27 1 11.7645 6.0093 4.5034 28 1 10.8538 7.2068 2.6015 29 6 5.4140 2.9306 0.0036 30 6 4.0560 2.5299 0.0021 31 6 3.4231 1.2795 0.0005 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 -0.3634 0.5138 0.8900 35 1 0.2056 2.3127 -0.0016 36 1 1.2907 4.5102 -0.0009 37 1 5.6930 6.8815 0.0032 38 1 8.5047 6.4869 -1.8549 39 1 7.5111 7.9549 -2.0163 40 1 9.1825 8.0735 -1.4163 41 1 8.3417 9.2898 0.5445 42 1 6.6337 9.1033 0.0792 43 1 6.3748 9.7049 3.7139 44 1 7.4686 10.5381 2.5840 45 1 5.7873 10.1990 2.1078 46 1 9.1351 8.1430 2.5151 47 1 9.7254 5.7925 6.3218 48 1 6.2716 2.2741 0.0047 49 1 4.0111 0.3736 0.0002 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135320195.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:42 Heat of formation + Delta-G solvation = -31.250346 kcal Electronic energy + Delta-G solvation = -29986.064655 eV Core-core repulsion = 25913.174237 eV Total energy + Delta-G solvation = -4072.890418 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.64698 -40.85417 -40.03398 -38.44997 -36.60848 -36.22587 -34.13348 -33.27329 -32.40329 -31.03164 -30.39279 -29.76165 -27.68629 -27.63210 -25.53310 -25.21051 -23.19166 -22.54694 -21.99636 -21.39441 -21.28245 -19.87482 -19.47475 -18.60049 -18.17494 -17.29694 -16.76343 -16.69110 -16.57830 -16.29769 -16.00584 -15.64967 -15.32805 -15.12613 -14.87789 -14.82566 -14.60432 -14.34145 -14.22937 -14.13061 -14.03196 -13.69537 -13.45008 -13.29021 -13.02505 -12.90857 -12.82409 -12.75461 -12.65812 -12.40848 -12.01998 -11.88962 -11.71498 -11.69218 -11.49124 -11.47712 -11.29495 -10.97234 -10.92667 -10.18036 -9.27919 -9.07443 -8.59408 -8.01913 -5.32263 -0.35263 0.60019 1.02017 1.33124 1.38583 1.44068 1.79988 2.05394 2.28192 2.47750 2.48215 2.81256 3.31186 3.62957 3.64334 3.69734 3.82985 3.98685 4.03302 4.05406 4.30107 4.31371 4.37875 4.45228 4.48984 4.49547 4.52083 4.63156 4.74870 4.78271 4.80280 4.82920 4.86762 4.97844 5.01300 5.06740 5.11641 5.19741 5.30566 5.31814 5.33590 5.38767 5.50815 5.57760 5.59701 5.78716 5.81816 6.22915 6.35778 6.51697 6.55000 7.08827 7.11021 7.89479 8.04695 9.20354 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012491 B = 0.002629 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2240.992942 B =10648.275122 C =11312.286803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.340 6.340 3 C 0.092 3.908 4 C -0.161 4.161 5 C -0.084 4.084 6 C 0.077 3.923 7 N -0.558 5.558 8 H 0.433 0.567 9 C 0.026 3.974 10 C 0.579 3.421 11 O -0.565 6.565 12 N -0.697 5.697 13 C 0.140 3.860 14 H 0.052 0.948 15 C -0.153 4.153 16 C -0.121 4.121 17 C 0.165 3.835 18 H 0.041 0.959 19 C -0.157 4.157 20 N -0.748 5.748 21 C -0.213 4.213 22 H 0.052 0.948 23 C -0.070 4.070 24 N -0.988 5.988 25 Si 0.949 3.051 26 H -0.274 1.274 27 H -0.305 1.305 28 H -0.254 1.254 29 C -0.139 4.139 30 C -0.100 4.100 31 C -0.129 4.129 32 H 0.069 0.931 33 H 0.114 0.886 34 H 0.065 0.935 35 H 0.167 0.833 36 H 0.163 0.837 37 H 0.409 0.591 38 H 0.038 0.962 39 H 0.083 0.917 40 H 0.077 0.923 41 H 0.090 0.910 42 H 0.114 0.886 43 H 0.024 0.976 44 H 0.052 0.948 45 H 0.080 0.920 46 H 0.362 0.638 47 H 0.254 0.746 48 H 0.144 0.856 49 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.203 -0.173 -20.380 28.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.254 6.254 3 C 0.047 3.953 4 C -0.180 4.180 5 C -0.105 4.105 6 C -0.033 4.033 7 N -0.165 5.165 8 H 0.274 0.726 9 C -0.085 4.085 10 C 0.366 3.634 11 O -0.444 6.444 12 N -0.349 5.349 13 C 0.036 3.964 14 H 0.070 0.930 15 C -0.211 4.211 16 C -0.159 4.159 17 C 0.058 3.942 18 H 0.059 0.941 19 C -0.217 4.217 20 N -0.392 5.392 21 C -0.344 4.344 22 H 0.070 0.930 23 C -0.261 4.261 24 N -0.639 5.639 25 Si 0.777 3.223 26 H -0.200 1.200 27 H -0.232 1.232 28 H -0.179 1.179 29 C -0.167 4.167 30 C -0.104 4.104 31 C -0.149 4.149 32 H 0.088 0.912 33 H 0.132 0.868 34 H 0.083 0.917 35 H 0.184 0.816 36 H 0.181 0.819 37 H 0.246 0.754 38 H 0.057 0.943 39 H 0.102 0.898 40 H 0.096 0.904 41 H 0.108 0.892 42 H 0.132 0.868 43 H 0.043 0.957 44 H 0.071 0.929 45 H 0.099 0.901 46 H 0.195 0.805 47 H 0.063 0.937 48 H 0.162 0.838 49 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -19.445 -0.607 -20.234 28.069 hybrid contribution 0.971 0.185 0.640 1.177 sum -18.475 -0.422 -19.594 26.934 Atomic orbital electron populations 1.23341 0.76461 1.05445 1.02410 1.86064 1.23434 1.26555 1.89369 1.18717 0.91582 0.85184 0.99861 1.21360 1.01384 0.90463 1.04843 1.20240 0.89281 0.99386 1.01549 1.18523 0.92481 0.86362 1.05913 1.41697 1.02762 1.08547 1.63517 0.72599 1.19968 0.84055 0.93720 1.10791 1.17410 0.87053 0.82744 0.76204 1.90833 1.28486 1.73481 1.51600 1.45725 1.10698 1.04635 1.73796 1.21033 0.86501 0.91526 0.97321 0.92959 1.22106 1.02551 1.01648 0.94782 1.22168 1.04575 0.94850 0.94323 1.20530 0.89125 0.93970 0.90588 0.94092 1.22285 1.01302 0.97974 1.00111 1.42816 1.04405 1.66003 1.25979 1.18933 0.92993 1.24359 0.98155 0.92995 1.25455 1.01751 1.01164 0.97681 1.69879 1.30564 1.44499 1.18963 0.85484 0.80747 0.77011 0.79022 1.20038 1.23196 1.17883 1.20950 0.96564 0.93150 1.06023 1.17945 0.92642 0.93119 1.06731 1.19804 0.92246 0.96390 1.06426 0.91245 0.86807 0.91655 0.81572 0.81925 0.75436 0.94288 0.89766 0.90427 0.89185 0.86790 0.95684 0.92921 0.90123 0.80467 0.93708 0.83828 0.85364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.81 113.37 1.11 1.28 16 2 O -0.34 -6.71 10.49 -93.36 -0.98 -7.69 16 3 C 0.09 1.98 6.67 22.45 0.15 2.13 16 4 C -0.16 -2.55 9.01 22.40 0.20 -2.35 16 5 C -0.08 -1.36 10.06 22.35 0.22 -1.14 16 6 C 0.08 1.73 7.25 39.09 0.28 2.02 16 7 N -0.56 -11.89 6.08 -177.11 -1.08 -12.97 16 8 H 0.43 5.84 8.12 -92.71 -0.75 5.08 16 9 C 0.03 0.77 6.96 39.92 0.28 1.04 16 10 C 0.58 19.59 7.76 86.55 0.67 20.26 16 11 O -0.57 -24.63 16.50 -4.18 -0.07 -24.70 16 12 N -0.70 -18.20 4.45 -446.15 -1.98 -20.18 16 13 C 0.14 3.90 2.52 44.99 0.11 4.01 16 14 H 0.05 2.04 7.06 -2.39 -0.02 2.02 16 15 C -0.15 -3.36 9.48 71.98 0.68 -2.68 16 16 C -0.12 -2.79 4.29 30.60 0.13 -2.66 16 17 C 0.17 5.46 2.84 44.99 0.13 5.59 16 18 H 0.04 1.45 7.56 -2.39 -0.02 1.43 16 19 C -0.16 -4.61 9.49 71.98 0.68 -3.92 16 20 N -0.75 -33.83 4.30 -322.94 -1.39 -35.22 16 21 C -0.21 -12.28 10.41 84.03 0.87 -11.40 16 22 H 0.05 3.30 8.06 -2.91 -0.02 3.28 16 23 C -0.07 -4.27 5.50 84.86 0.47 -3.80 16 24 N -0.99 -66.05 13.97 21.65 0.30 -65.75 16 25 Si 0.95 47.99 27.74 68.60 1.90 49.89 16 26 H -0.27 -13.23 7.11 99.48 0.71 -12.53 16 27 H -0.30 -15.97 7.11 99.48 0.71 -15.27 16 28 H -0.25 -11.74 6.52 99.48 0.65 -11.09 16 29 C -0.14 -4.39 10.53 22.55 0.24 -4.16 16 30 C -0.10 -2.78 6.16 -21.36 -0.13 -2.91 16 31 C -0.13 -3.33 10.04 22.64 0.23 -3.10 16 32 H 0.07 0.45 7.65 -2.38 -0.02 0.43 16 33 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.06 0.49 7.65 -2.39 -0.02 0.47 16 35 H 0.17 1.43 6.26 -2.91 -0.02 1.41 16 36 H 0.16 1.42 8.06 -2.91 -0.02 1.40 16 37 H 0.41 7.31 7.65 -92.71 -0.71 6.60 16 38 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 42 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 43 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 44 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 45 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 46 H 0.36 16.06 5.66 -92.71 -0.52 15.53 16 47 H 0.25 16.33 8.31 -92.71 -0.77 15.56 16 48 H 0.14 4.68 8.06 -2.91 -0.02 4.66 16 49 H 0.13 3.22 8.06 -2.91 -0.02 3.20 16 Total: -1.00 -86.14 404.46 1.99 -84.15 By element: Atomic # 1 Polarization: 35.30 SS G_CDS: -1.05 Total: 34.25 kcal Atomic # 6 Polarization: -8.11 SS G_CDS: 6.33 Total: -1.77 kcal Atomic # 7 Polarization: -129.97 SS G_CDS: -4.15 Total: -134.12 kcal Atomic # 8 Polarization: -31.34 SS G_CDS: -1.05 Total: -32.39 kcal Atomic # 14 Polarization: 47.99 SS G_CDS: 1.90 Total: 49.89 kcal Total: -86.14 1.99 -84.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135320195.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.896 kcal (2) G-P(sol) polarization free energy of solvation -86.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds