Wall clock time and date at job start Wed Apr 1 2020 04:17:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47038 * 2 1 4 4 C 1.52996 * 109.46987 * 240.00159 * 2 1 3 5 5 C 1.52997 * 109.46894 * 175.00178 * 4 2 1 6 6 H 1.09000 * 109.47140 * 304.99571 * 5 4 2 7 7 C 1.53006 * 109.47164 * 184.99623 * 5 4 2 8 8 N 1.46500 * 109.47204 * 64.99698 * 5 4 2 9 9 C 1.34770 * 119.99955 * 204.99611 * 8 5 4 10 10 O 1.21279 * 120.00155 * 0.02562 * 9 8 5 11 11 C 1.50699 * 119.99961 * 180.02562 * 9 8 5 12 12 N 1.46502 * 109.47358 * 180.02562 * 11 9 8 13 13 C 1.39528 * 123.87726 * 269.72919 * 12 11 9 14 14 C 1.39360 * 130.82354 * 0.60397 * 13 12 11 15 15 C 1.37943 * 120.13236 * 179.70018 * 14 13 12 16 16 C 1.38306 * 120.37141 * 359.75135 * 15 14 13 17 17 C 1.38389 * 119.82884 * 0.02562 * 16 15 14 18 18 C 1.37680 * 119.91578 * 359.97438 * 17 16 15 19 19 C 1.51130 * 132.85146 * 179.97438 * 18 17 16 20 20 C 1.34373 * 123.87663 * 90.02352 * 12 11 9 21 21 O 1.21296 * 126.44114 * 359.94102 * 20 12 11 22 22 N 1.46500 * 109.46686 * 119.99895 * 2 1 3 23 23 C 1.36933 * 119.99960 * 274.99636 * 22 2 1 24 24 H 1.08002 * 120.00527 * 0.02562 * 23 22 2 25 25 C 1.38817 * 119.99821 * 180.02562 * 23 22 2 26 26 N 1.31618 * 120.00047 * 0.02562 * 25 23 22 27 27 Si 1.86796 * 119.99993 * 180.02562 * 25 23 22 28 28 H 1.48503 * 109.47211 * 359.97438 * 27 25 23 29 29 H 1.48504 * 109.47364 * 120.00027 * 27 25 23 30 30 H 1.48502 * 109.47127 * 240.00093 * 27 25 23 31 31 H 1.09001 * 109.47658 * 300.00205 * 1 2 3 32 32 H 1.09004 * 109.47329 * 59.99532 * 1 2 3 33 33 H 1.09001 * 109.47697 * 179.97438 * 1 2 3 34 34 H 1.08994 * 109.47407 * 54.99668 * 4 2 1 35 35 H 1.09001 * 109.46995 * 294.99930 * 4 2 1 36 36 H 1.09001 * 109.47002 * 59.99738 * 7 5 4 37 37 H 1.08993 * 109.46955 * 180.02562 * 7 5 4 38 38 H 1.09000 * 109.47050 * 300.00004 * 7 5 4 39 39 H 0.96997 * 120.00110 * 25.00389 * 8 5 4 40 40 H 1.09002 * 109.47098 * 300.00283 * 11 9 8 41 41 H 1.08999 * 109.47446 * 60.00244 * 11 9 8 42 42 H 1.07996 * 119.93672 * 359.45476 * 14 13 12 43 43 H 1.07996 * 119.81249 * 179.73056 * 15 14 13 44 44 H 1.08006 * 120.08478 * 179.97438 * 16 15 14 45 45 H 1.07999 * 120.04238 * 180.02562 * 17 16 15 46 46 H 1.08997 * 110.51101 * 61.39141 * 19 18 17 47 47 H 1.09003 * 110.62782 * 298.74079 * 19 18 17 48 48 H 0.96998 * 119.99719 * 95.00665 * 22 2 1 49 49 H 0.97002 * 120.00197 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5648 -0.6133 -1.3136 6 1 3.8570 0.4358 -1.2677 7 6 4.0645 -1.2251 -2.6240 8 7 4.1536 -1.3342 -0.1823 9 6 5.3746 -0.9911 0.2733 10 8 5.9858 -0.0853 -0.2528 11 6 5.9806 -1.7330 1.4367 12 7 7.3011 -1.1745 1.7378 13 6 8.4886 -1.6350 1.1681 14 6 8.7206 -2.6463 0.2377 15 6 10.0055 -2.9171 -0.1848 16 6 11.0718 -2.1857 0.3060 17 6 10.8488 -1.1768 1.2267 18 6 9.5673 -0.9045 1.6501 19 6 8.9981 0.1042 2.6209 20 6 7.5082 -0.1637 2.5985 21 8 6.6609 0.4237 3.2374 22 7 2.0182 -0.6906 1.1962 23 6 2.1490 -0.0074 2.3757 24 1 1.8919 1.0404 2.4244 25 6 2.6122 -0.6617 3.5091 26 7 2.9260 -1.9386 3.4497 27 14 2.7899 0.2700 5.1183 28 1 2.3752 1.6822 4.9211 29 1 1.9296 -0.3593 6.1523 30 1 4.2069 0.2279 5.5607 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 1.6053 -0.2618 -2.1369 35 1 1.7516 -1.7715 -1.2056 36 1 3.6264 -0.6887 -3.4657 37 1 5.1508 -1.1485 -2.6696 38 1 3.7723 -2.2741 -2.6699 39 1 3.6647 -2.0584 0.2387 40 1 5.3353 -1.6300 2.3092 41 1 6.0815 -2.7880 1.1820 42 1 7.8932 -3.2218 -0.1503 43 1 10.1798 -3.7048 -0.9027 44 1 12.0760 -2.4019 -0.0277 45 1 11.6789 -0.6033 1.6120 46 1 9.2085 1.1193 2.2841 47 1 9.4003 -0.0562 3.6212 48 1 2.2490 -1.6317 1.1526 49 1 3.2500 -2.3957 4.2416 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135554248.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:35 Heat of formation + Delta-G solvation = -15.857661 kcal Electronic energy + Delta-G solvation = -31821.841966 eV Core-core repulsion = 27749.619024 eV Total energy + Delta-G solvation = -4072.222941 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.37989 -39.22317 -38.16124 -36.82401 -35.52387 -34.16075 -32.93974 -32.24427 -30.85524 -30.05879 -28.56221 -27.99243 -26.88135 -26.30003 -23.63139 -22.48631 -21.78300 -21.49926 -20.27547 -20.13746 -19.40454 -17.20922 -17.13089 -16.88000 -16.65175 -15.83753 -15.66431 -15.37439 -14.81799 -14.64808 -14.28678 -13.98368 -13.79038 -13.70820 -13.51373 -13.32374 -13.07115 -12.94623 -12.89272 -12.73027 -12.28134 -12.17832 -11.95482 -11.87303 -11.72601 -11.67838 -11.52818 -10.97172 -10.94634 -10.76754 -10.69945 -10.55987 -10.36752 -10.17668 -9.86998 -9.76009 -9.64616 -9.25848 -8.92199 -8.88400 -8.38875 -7.76165 -6.92548 -5.79023 -3.04215 1.24788 1.31965 2.68799 2.92085 3.23779 3.51292 3.59029 3.64462 3.74717 3.95394 4.25925 4.47832 4.66969 4.83446 4.93312 5.06409 5.15785 5.26035 5.32681 5.41675 5.44543 5.44980 5.47651 5.53134 5.58503 5.67118 5.73689 5.85445 5.87508 5.94848 6.00260 6.06626 6.11742 6.13691 6.24406 6.33100 6.34254 6.41279 6.45636 6.54483 6.60533 6.67905 6.85437 6.86662 7.05624 7.15181 7.28414 7.75236 8.10207 8.24384 8.41090 8.83975 9.54298 10.05737 10.41521 11.43710 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010664 B = 0.004455 C = 0.003402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2624.937838 B = 6283.577951 C = 8228.011809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.169 3.831 3 H 0.047 0.953 4 C -0.133 4.133 5 C 0.151 3.849 6 H 0.081 0.919 7 C -0.161 4.161 8 N -0.693 5.693 9 C 0.516 3.484 10 O -0.553 6.553 11 C 0.085 3.915 12 N -0.531 5.531 13 C 0.168 3.832 14 C -0.141 4.141 15 C -0.084 4.084 16 C -0.153 4.153 17 C -0.066 4.066 18 C -0.147 4.147 19 C -0.111 4.111 20 C 0.524 3.476 21 O -0.477 6.477 22 N -0.716 5.716 23 C -0.225 4.225 24 H 0.067 0.933 25 C -0.005 4.005 26 N -0.939 5.939 27 Si 0.899 3.101 28 H -0.284 1.284 29 H -0.296 1.296 30 H -0.286 1.286 31 H 0.052 0.948 32 H 0.035 0.965 33 H 0.045 0.955 34 H 0.073 0.927 35 H 0.064 0.936 36 H 0.060 0.940 37 H 0.055 0.945 38 H 0.053 0.947 39 H 0.405 0.595 40 H 0.147 0.853 41 H 0.103 0.897 42 H 0.122 0.878 43 H 0.126 0.874 44 H 0.125 0.875 45 H 0.125 0.875 46 H 0.120 0.880 47 H 0.119 0.881 48 H 0.377 0.623 49 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.153 -4.232 -9.892 16.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.059 3.941 3 H 0.065 0.935 4 C -0.171 4.171 5 C 0.046 3.954 6 H 0.099 0.901 7 C -0.219 4.219 8 N -0.346 5.346 9 C 0.300 3.700 10 O -0.432 6.432 11 C -0.040 4.040 12 N -0.252 5.252 13 C 0.071 3.929 14 C -0.162 4.162 15 C -0.103 4.103 16 C -0.172 4.172 17 C -0.085 4.085 18 C -0.150 4.150 19 C -0.150 4.150 20 C 0.312 3.688 21 O -0.348 6.348 22 N -0.360 5.360 23 C -0.356 4.356 24 H 0.085 0.915 25 C -0.200 4.200 26 N -0.589 5.589 27 Si 0.731 3.269 28 H -0.209 1.209 29 H -0.224 1.224 30 H -0.212 1.212 31 H 0.071 0.929 32 H 0.054 0.946 33 H 0.064 0.936 34 H 0.092 0.908 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.072 0.928 39 H 0.243 0.757 40 H 0.165 0.835 41 H 0.121 0.879 42 H 0.140 0.860 43 H 0.144 0.856 44 H 0.143 0.857 45 H 0.143 0.857 46 H 0.138 0.862 47 H 0.137 0.863 48 H 0.212 0.788 49 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 11.925 -3.087 -9.714 15.687 hybrid contribution -0.361 -0.224 1.096 1.176 sum 11.564 -3.310 -8.618 14.797 Atomic orbital electron populations 1.22418 0.99290 1.00693 0.99920 1.20280 0.91702 0.95733 0.86373 0.93503 1.22202 0.93886 1.01626 0.99425 1.20798 0.92563 0.97256 0.84817 0.90054 1.22195 1.01647 1.00796 0.97286 1.45884 1.17522 1.37630 1.33593 1.20575 0.81824 0.83905 0.83649 1.90636 1.62232 1.30849 1.59464 1.21661 0.83701 0.97464 1.01141 1.45471 1.05271 1.33864 1.40579 1.18216 0.85304 0.94959 0.94460 1.20341 0.97910 0.98893 0.99092 1.20812 0.91572 0.99051 0.98874 1.20955 0.98979 0.97682 0.99584 1.20203 0.94482 0.97218 0.96589 1.19813 0.93438 0.99705 1.02028 1.21031 0.92642 1.00570 1.00753 1.20604 0.91118 0.78664 0.78380 1.90897 1.50983 1.49755 1.43185 1.42446 1.78035 1.10053 1.05422 1.19229 1.35475 0.93763 0.87171 0.91514 1.24503 1.01955 0.95872 0.97682 1.69585 1.52058 1.08465 1.28759 0.86225 0.77652 0.78849 0.84221 1.20912 1.22366 1.21237 0.92859 0.94629 0.93605 0.90843 0.91702 0.92141 0.92540 0.92796 0.75708 0.83517 0.87894 0.86028 0.85575 0.85718 0.85678 0.86239 0.86321 0.78837 0.93798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.83 9.49 37.16 0.35 -2.48 16 2 C 0.17 3.19 2.89 -67.93 -0.20 2.99 16 3 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 4 C -0.13 -1.99 4.43 -26.73 -0.12 -2.11 16 5 C 0.15 2.44 2.57 -67.93 -0.17 2.26 16 6 H 0.08 1.54 7.58 -51.93 -0.39 1.14 16 7 C -0.16 -2.14 9.48 37.16 0.35 -1.79 16 8 N -0.69 -12.35 3.80 -53.81 -0.20 -12.55 16 9 C 0.52 10.27 7.86 -10.99 -0.09 10.18 16 10 O -0.55 -12.52 16.09 5.56 0.09 -12.43 16 11 C 0.09 1.60 6.22 -5.19 -0.03 1.57 16 12 N -0.53 -9.64 2.22 -114.53 -0.25 -9.89 16 13 C 0.17 2.56 6.69 -83.69 -0.56 2.00 16 14 C -0.14 -1.82 9.74 -39.27 -0.38 -2.20 16 15 C -0.08 -0.88 10.02 -39.66 -0.40 -1.28 16 16 C -0.15 -1.48 10.07 -39.50 -0.40 -1.88 16 17 C -0.07 -0.70 10.04 -39.73 -0.40 -1.10 16 18 C -0.15 -1.97 6.35 -104.37 -0.66 -2.63 16 19 C -0.11 -1.53 6.88 -28.48 -0.20 -1.73 16 20 C 0.52 10.20 8.23 -10.83 -0.09 10.11 16 21 O -0.48 -11.54 17.67 5.54 0.10 -11.45 16 22 N -0.72 -16.30 3.84 -53.43 -0.21 -16.50 16 23 C -0.23 -6.04 9.93 -15.06 -0.15 -6.19 16 24 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 25 C -0.01 -0.14 5.50 -17.43 -0.10 -0.24 16 26 N -0.94 -25.58 12.78 55.49 0.71 -24.87 16 27 Si 0.90 23.39 29.55 -169.99 -5.02 18.36 16 28 H -0.28 -7.37 7.11 56.52 0.40 -6.97 16 29 H -0.30 -7.66 7.11 56.52 0.40 -7.25 16 30 H -0.29 -7.80 7.11 56.52 0.40 -7.40 16 31 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.41 7.20 6.51 -40.82 -0.27 6.93 16 40 H 0.15 3.29 7.67 -51.93 -0.40 2.90 16 41 H 0.10 1.56 7.61 -51.93 -0.40 1.17 16 42 H 0.12 1.44 7.70 -52.49 -0.40 1.04 16 43 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 44 H 0.12 0.87 8.06 -52.48 -0.42 0.45 16 45 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 46 H 0.12 1.49 8.14 -51.93 -0.42 1.06 16 47 H 0.12 1.35 8.14 -51.93 -0.42 0.93 16 48 H 0.38 8.63 5.70 -40.82 -0.23 8.40 16 49 H 0.25 6.87 8.31 -40.82 -0.34 6.54 16 LS Contribution 406.24 15.07 6.12 6.12 Total: -1.00 -33.26 406.24 -9.45 -42.71 By element: Atomic # 1 Polarization: 22.56 SS G_CDS: -7.55 Total: 15.01 kcal Atomic # 6 Polarization: 8.72 SS G_CDS: -3.23 Total: 5.49 kcal Atomic # 7 Polarization: -63.87 SS G_CDS: 0.04 Total: -63.82 kcal Atomic # 8 Polarization: -24.07 SS G_CDS: 0.19 Total: -23.88 kcal Atomic # 14 Polarization: 23.39 SS G_CDS: -5.02 Total: 18.36 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -33.26 -9.45 -42.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135554248.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.856 kcal (2) G-P(sol) polarization free energy of solvation -33.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds