Wall clock time and date at job start Wed Apr 1 2020 04:17:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47038 * 2 1 4 4 C 1.52996 * 109.46987 * 240.00159 * 2 1 3 5 5 C 1.52997 * 109.46894 * 175.00178 * 4 2 1 6 6 H 1.09000 * 109.47140 * 304.99571 * 5 4 2 7 7 C 1.53006 * 109.47164 * 184.99623 * 5 4 2 8 8 N 1.46500 * 109.47204 * 64.99698 * 5 4 2 9 9 C 1.34770 * 119.99955 * 204.99611 * 8 5 4 10 10 O 1.21279 * 120.00155 * 0.02562 * 9 8 5 11 11 C 1.50699 * 119.99961 * 180.02562 * 9 8 5 12 12 N 1.46502 * 109.47358 * 180.02562 * 11 9 8 13 13 C 1.39528 * 123.87726 * 269.72919 * 12 11 9 14 14 C 1.39360 * 130.82354 * 0.60397 * 13 12 11 15 15 C 1.37943 * 120.13236 * 179.70018 * 14 13 12 16 16 C 1.38306 * 120.37141 * 359.75135 * 15 14 13 17 17 C 1.38389 * 119.82884 * 0.02562 * 16 15 14 18 18 C 1.37680 * 119.91578 * 359.97438 * 17 16 15 19 19 C 1.51130 * 132.85146 * 179.97438 * 18 17 16 20 20 C 1.34373 * 123.87663 * 90.02352 * 12 11 9 21 21 O 1.21296 * 126.44114 * 359.94102 * 20 12 11 22 22 N 1.46500 * 109.46686 * 119.99895 * 2 1 3 23 23 C 1.36933 * 119.99960 * 274.99636 * 22 2 1 24 24 H 1.08002 * 120.00527 * 0.02562 * 23 22 2 25 25 C 1.38817 * 119.99821 * 180.02562 * 23 22 2 26 26 N 1.31618 * 120.00047 * 0.02562 * 25 23 22 27 27 Si 1.86796 * 119.99993 * 180.02562 * 25 23 22 28 28 H 1.48503 * 109.47211 * 359.97438 * 27 25 23 29 29 H 1.48504 * 109.47364 * 120.00027 * 27 25 23 30 30 H 1.48502 * 109.47127 * 240.00093 * 27 25 23 31 31 H 1.09001 * 109.47658 * 300.00205 * 1 2 3 32 32 H 1.09004 * 109.47329 * 59.99532 * 1 2 3 33 33 H 1.09001 * 109.47697 * 179.97438 * 1 2 3 34 34 H 1.08994 * 109.47407 * 54.99668 * 4 2 1 35 35 H 1.09001 * 109.46995 * 294.99930 * 4 2 1 36 36 H 1.09001 * 109.47002 * 59.99738 * 7 5 4 37 37 H 1.08993 * 109.46955 * 180.02562 * 7 5 4 38 38 H 1.09000 * 109.47050 * 300.00004 * 7 5 4 39 39 H 0.96997 * 120.00110 * 25.00389 * 8 5 4 40 40 H 1.09002 * 109.47098 * 300.00283 * 11 9 8 41 41 H 1.08999 * 109.47446 * 60.00244 * 11 9 8 42 42 H 1.07996 * 119.93672 * 359.45476 * 14 13 12 43 43 H 1.07996 * 119.81249 * 179.73056 * 15 14 13 44 44 H 1.08006 * 120.08478 * 179.97438 * 16 15 14 45 45 H 1.07999 * 120.04238 * 180.02562 * 17 16 15 46 46 H 1.08997 * 110.51101 * 61.39141 * 19 18 17 47 47 H 1.09003 * 110.62782 * 298.74079 * 19 18 17 48 48 H 0.96998 * 119.99719 * 95.00665 * 22 2 1 49 49 H 0.97002 * 120.00197 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5648 -0.6133 -1.3136 6 1 3.8570 0.4358 -1.2677 7 6 4.0645 -1.2251 -2.6240 8 7 4.1536 -1.3342 -0.1823 9 6 5.3746 -0.9911 0.2733 10 8 5.9858 -0.0853 -0.2528 11 6 5.9806 -1.7330 1.4367 12 7 7.3011 -1.1745 1.7378 13 6 8.4886 -1.6350 1.1681 14 6 8.7206 -2.6463 0.2377 15 6 10.0055 -2.9171 -0.1848 16 6 11.0718 -2.1857 0.3060 17 6 10.8488 -1.1768 1.2267 18 6 9.5673 -0.9045 1.6501 19 6 8.9981 0.1042 2.6209 20 6 7.5082 -0.1637 2.5985 21 8 6.6609 0.4237 3.2374 22 7 2.0182 -0.6906 1.1962 23 6 2.1490 -0.0074 2.3757 24 1 1.8919 1.0404 2.4244 25 6 2.6122 -0.6617 3.5091 26 7 2.9260 -1.9386 3.4497 27 14 2.7899 0.2700 5.1183 28 1 2.3752 1.6822 4.9211 29 1 1.9296 -0.3593 6.1523 30 1 4.2069 0.2279 5.5607 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 1.6053 -0.2618 -2.1369 35 1 1.7516 -1.7715 -1.2056 36 1 3.6264 -0.6887 -3.4657 37 1 5.1508 -1.1485 -2.6696 38 1 3.7723 -2.2741 -2.6699 39 1 3.6647 -2.0584 0.2387 40 1 5.3353 -1.6300 2.3092 41 1 6.0815 -2.7880 1.1820 42 1 7.8932 -3.2218 -0.1503 43 1 10.1798 -3.7048 -0.9027 44 1 12.0760 -2.4019 -0.0277 45 1 11.6789 -0.6033 1.6120 46 1 9.2085 1.1193 2.2841 47 1 9.4003 -0.0562 3.6212 48 1 2.2490 -1.6317 1.1526 49 1 3.2500 -2.3957 4.2416 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135554248.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:33 Heat of formation + Delta-G solvation = -36.301537 kcal Electronic energy + Delta-G solvation = -31822.728479 eV Core-core repulsion = 27749.619024 eV Total energy + Delta-G solvation = -4073.109454 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.60625 -40.70367 -39.41288 -38.38824 -36.83523 -35.82266 -34.24871 -33.92841 -32.29064 -31.16179 -30.28190 -29.07735 -28.14748 -27.59522 -25.62774 -23.55416 -23.04262 -22.57160 -21.75744 -21.53695 -20.83811 -19.18430 -18.44782 -18.27595 -17.95868 -17.18629 -16.79123 -16.72715 -16.62256 -16.11190 -15.65100 -15.49040 -15.31604 -15.05135 -14.88428 -14.74655 -14.35583 -14.25505 -14.15826 -13.94650 -13.64190 -13.45364 -13.34130 -13.30831 -13.01119 -12.93779 -12.82481 -12.72604 -12.64936 -12.33384 -12.18959 -11.86242 -11.83145 -11.74365 -11.66195 -11.44659 -11.23050 -10.93569 -10.76389 -9.91344 -9.76917 -8.91304 -8.86376 -7.94569 -5.13890 0.24826 0.42973 1.32025 1.34804 1.44101 1.47902 1.63980 1.67038 2.45153 2.55763 2.89538 3.12354 3.39496 3.42938 3.69386 3.82716 3.90041 3.93504 4.03560 4.13998 4.15633 4.33742 4.34477 4.36232 4.41507 4.49113 4.54253 4.62751 4.65735 4.79821 4.80543 4.84711 4.89027 4.96684 5.05045 5.10677 5.12011 5.13553 5.33710 5.38700 5.47704 5.54818 5.59599 5.60311 5.63631 5.72326 5.82818 6.15960 6.30546 6.59450 6.82127 7.30049 7.41230 8.12320 8.39753 9.26862 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010664 B = 0.004455 C = 0.003402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2624.937838 B = 6283.577951 C = 8228.011809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.160 3.840 3 H 0.022 0.978 4 C -0.118 4.118 5 C 0.146 3.854 6 H 0.048 0.952 7 C -0.148 4.148 8 N -0.686 5.686 9 C 0.511 3.489 10 O -0.586 6.586 11 C 0.089 3.911 12 N -0.535 5.535 13 C 0.122 3.878 14 C -0.150 4.150 15 C -0.083 4.083 16 C -0.138 4.138 17 C -0.064 4.064 18 C -0.152 4.152 19 C -0.099 4.099 20 C 0.502 3.498 21 O -0.549 6.549 22 N -0.718 5.718 23 C -0.223 4.223 24 H 0.051 0.949 25 C -0.041 4.041 26 N -0.941 5.941 27 Si 0.932 3.068 28 H -0.285 1.285 29 H -0.288 1.288 30 H -0.310 1.310 31 H 0.026 0.974 32 H 0.070 0.930 33 H 0.051 0.949 34 H 0.110 0.890 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.037 0.963 38 H 0.073 0.927 39 H 0.406 0.594 40 H 0.107 0.893 41 H 0.133 0.867 42 H 0.123 0.877 43 H 0.158 0.842 44 H 0.164 0.836 45 H 0.158 0.842 46 H 0.134 0.866 47 H 0.144 0.856 48 H 0.376 0.624 49 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.889 -5.819 -12.733 19.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.052 3.948 3 H 0.040 0.960 4 C -0.156 4.156 5 C 0.041 3.959 6 H 0.066 0.934 7 C -0.206 4.206 8 N -0.338 5.338 9 C 0.297 3.703 10 O -0.468 6.468 11 C -0.036 4.036 12 N -0.255 5.255 13 C 0.027 3.973 14 C -0.171 4.171 15 C -0.102 4.102 16 C -0.156 4.156 17 C -0.082 4.082 18 C -0.155 4.155 19 C -0.137 4.137 20 C 0.293 3.707 21 O -0.426 6.426 22 N -0.361 5.361 23 C -0.355 4.355 24 H 0.069 0.931 25 C -0.235 4.235 26 N -0.592 5.592 27 Si 0.765 3.235 28 H -0.211 1.211 29 H -0.215 1.215 30 H -0.238 1.238 31 H 0.046 0.954 32 H 0.089 0.911 33 H 0.070 0.930 34 H 0.128 0.872 35 H 0.100 0.900 36 H 0.104 0.896 37 H 0.057 0.943 38 H 0.092 0.908 39 H 0.244 0.756 40 H 0.125 0.875 41 H 0.150 0.850 42 H 0.141 0.859 43 H 0.176 0.824 44 H 0.181 0.819 45 H 0.176 0.824 46 H 0.151 0.849 47 H 0.162 0.838 48 H 0.211 0.789 49 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 13.658 -4.711 -12.621 19.184 hybrid contribution -0.806 0.256 1.858 2.041 sum 12.852 -4.455 -10.764 17.345 Atomic orbital electron populations 1.22259 0.97399 1.01208 1.00389 1.20510 0.92943 0.94679 0.86650 0.95953 1.22122 0.92622 1.02361 0.98521 1.20964 0.93551 0.95594 0.85751 0.93383 1.22071 1.00486 1.02071 0.95960 1.45937 1.16717 1.37310 1.33796 1.20789 0.82302 0.83528 0.83696 1.90598 1.63237 1.32214 1.60708 1.21492 0.84068 0.99165 0.98912 1.45539 1.05889 1.33597 1.40497 1.18591 0.84449 0.97370 0.96915 1.20613 0.99474 0.98361 0.98639 1.21244 0.90490 0.99594 0.98831 1.21486 1.00523 0.95915 0.97696 1.20627 0.93910 0.97507 0.96205 1.19980 0.94267 0.99278 1.02000 1.21010 0.88518 1.01593 1.02619 1.21628 0.93164 0.78246 0.77668 1.90832 1.53344 1.52278 1.46126 1.42471 1.78197 1.09948 1.05518 1.19250 1.34341 0.93205 0.88711 0.93134 1.24818 1.03163 0.96595 0.98969 1.69611 1.52679 1.08441 1.28466 0.85696 0.76054 0.78384 0.83352 1.21075 1.21529 1.23830 0.95430 0.91150 0.92975 0.87188 0.89996 0.89602 0.94345 0.90808 0.75612 0.87536 0.84967 0.85864 0.82408 0.81883 0.82423 0.84861 0.83842 0.78890 0.94357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.06 9.49 71.98 0.68 -4.38 16 2 C 0.16 5.99 2.89 44.99 0.13 6.12 16 3 H 0.02 0.94 8.08 -2.39 -0.02 0.93 16 4 C -0.12 -3.27 4.43 30.59 0.14 -3.14 16 5 C 0.15 4.63 2.57 44.99 0.12 4.75 16 6 H 0.05 1.86 7.58 -2.39 -0.02 1.84 16 7 C -0.15 -3.61 9.48 71.98 0.68 -2.92 16 8 N -0.69 -24.96 3.80 -442.54 -1.68 -26.64 16 9 C 0.51 21.40 7.86 87.66 0.69 22.09 16 10 O -0.59 -27.92 16.09 -3.03 -0.05 -27.97 16 11 C 0.09 3.57 6.22 85.63 0.53 4.10 16 12 N -0.53 -20.55 2.22 -634.87 -1.41 -21.96 16 13 C 0.12 3.73 6.69 38.35 0.26 3.98 16 14 C -0.15 -3.69 9.74 22.47 0.22 -3.47 16 15 C -0.08 -1.44 10.02 22.22 0.22 -1.22 16 16 C -0.14 -2.04 10.07 22.32 0.22 -1.81 16 17 C -0.06 -1.13 10.04 22.17 0.22 -0.91 16 18 C -0.15 -3.91 6.35 -19.70 -0.13 -4.03 16 19 C -0.10 -2.77 6.88 29.46 0.20 -2.57 16 20 C 0.50 20.98 8.23 87.94 0.72 21.71 16 21 O -0.55 -29.08 17.67 -3.08 -0.05 -29.13 16 22 N -0.72 -33.31 3.84 -322.95 -1.24 -34.55 16 23 C -0.22 -12.39 9.93 84.04 0.83 -11.56 16 24 H 0.05 2.94 7.83 -2.91 -0.02 2.91 16 25 C -0.04 -2.38 5.50 84.86 0.47 -1.91 16 26 N -0.94 -53.10 12.78 21.65 0.28 -52.82 16 27 Si 0.93 50.18 29.55 68.60 2.03 52.21 16 28 H -0.29 -15.24 7.11 99.48 0.71 -14.53 16 29 H -0.29 -14.98 7.11 99.48 0.71 -14.28 16 30 H -0.31 -17.87 7.11 99.48 0.71 -17.17 16 31 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 35 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 36 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.41 14.63 6.51 -92.71 -0.60 14.02 16 40 H 0.11 5.20 7.67 -2.39 -0.02 5.18 16 41 H 0.13 4.23 7.61 -2.39 -0.02 4.21 16 42 H 0.12 2.85 7.70 -2.91 -0.02 2.83 16 43 H 0.16 1.70 8.06 -2.91 -0.02 1.68 16 44 H 0.16 1.23 8.06 -2.91 -0.02 1.21 16 45 H 0.16 1.74 8.06 -2.91 -0.02 1.72 16 46 H 0.13 3.33 8.14 -2.39 -0.02 3.31 16 47 H 0.14 3.22 8.14 -2.39 -0.02 3.20 16 48 H 0.38 17.45 5.70 -92.71 -0.53 16.92 16 49 H 0.25 13.97 8.31 -92.71 -0.77 13.20 16 Total: -1.00 -79.69 406.24 3.92 -75.78 By element: Atomic # 1 Polarization: 40.42 SS G_CDS: -0.17 Total: 40.25 kcal Atomic # 6 Polarization: 18.62 SS G_CDS: 6.22 Total: 24.83 kcal Atomic # 7 Polarization: -131.92 SS G_CDS: -4.06 Total: -135.97 kcal Atomic # 8 Polarization: -57.00 SS G_CDS: -0.10 Total: -57.10 kcal Atomic # 14 Polarization: 50.18 SS G_CDS: 2.03 Total: 52.21 kcal Total: -79.69 3.92 -75.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135554248.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.474 kcal (2) G-P(sol) polarization free energy of solvation -79.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds