Wall clock time and date at job start Wed Apr 1 2020 04:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 5 5 C 1.52998 * 109.47705 * 174.99884 * 4 2 1 6 6 H 1.08998 * 109.47140 * 305.00658 * 5 4 2 7 7 C 1.52997 * 109.47892 * 185.00069 * 5 4 2 8 8 N 1.46505 * 109.46856 * 64.99701 * 5 4 2 9 9 C 1.36936 * 120.00345 * 204.99948 * 8 5 4 10 10 H 1.08009 * 119.99932 * 0.02562 * 9 8 5 11 11 C 1.38804 * 120.00306 * 180.02562 * 9 8 5 12 12 N 1.31622 * 119.99899 * 179.97438 * 11 9 8 13 13 Si 1.86804 * 119.99926 * 0.02562 * 11 9 8 14 14 H 1.48498 * 109.47179 * 89.99614 * 13 11 9 15 15 H 1.48501 * 109.46725 * 209.99819 * 13 11 9 16 16 H 1.48503 * 109.46845 * 329.99362 * 13 11 9 17 17 N 1.46497 * 109.47188 * 119.99573 * 2 1 3 18 18 C 1.34777 * 120.00376 * 275.00479 * 17 2 1 19 19 O 1.21279 * 119.99824 * 359.97438 * 18 17 2 20 20 C 1.50699 * 120.00179 * 179.97438 * 18 17 2 21 21 N 1.46499 * 109.47367 * 179.97438 * 20 18 17 22 22 C 1.39530 * 123.87830 * 269.73062 * 21 20 18 23 23 C 1.39368 * 130.82517 * 0.60325 * 22 21 20 24 24 C 1.37935 * 120.12809 * 179.69984 * 23 22 21 25 25 C 1.38302 * 120.37788 * 359.75573 * 24 23 22 26 26 C 1.38386 * 119.82856 * 359.97438 * 25 24 23 27 27 C 1.37684 * 119.91272 * 0.02562 * 26 25 24 28 28 C 1.51136 * 132.84990 * 179.97438 * 27 26 25 29 29 C 1.34376 * 123.87097 * 90.02353 * 21 20 18 30 30 O 1.21281 * 126.44698 * 359.94684 * 29 21 20 31 31 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 33 33 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 34 34 H 1.09001 * 109.47359 * 295.00205 * 4 2 1 35 35 H 1.09002 * 109.46906 * 55.00224 * 4 2 1 36 36 H 1.08994 * 109.47852 * 180.02562 * 7 5 4 37 37 H 1.08998 * 109.47208 * 300.00546 * 7 5 4 38 38 H 1.09002 * 109.46738 * 59.99498 * 7 5 4 39 39 H 0.96999 * 119.99579 * 25.01299 * 8 5 4 40 40 H 0.97002 * 119.99758 * 180.02562 * 12 11 9 41 41 H 0.97006 * 119.99921 * 94.99902 * 17 2 1 42 42 H 1.08995 * 109.47183 * 300.00111 * 20 18 17 43 43 H 1.09009 * 109.47183 * 59.99391 * 20 18 17 44 44 H 1.07995 * 119.92953 * 359.44835 * 23 22 21 45 45 H 1.08007 * 119.81101 * 179.72780 * 24 23 22 46 46 H 1.08001 * 120.08332 * 179.97438 * 25 24 23 47 47 H 1.08003 * 120.04874 * 180.02562 * 26 25 24 48 48 H 1.08996 * 110.51055 * 61.38709 * 28 27 26 49 49 H 1.09001 * 110.62679 * 298.73701 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2491 5 6 3.5648 -0.6133 -1.3136 6 1 3.8571 0.4358 -1.2677 7 6 4.0646 -1.2250 -2.6239 8 7 4.1537 -1.3341 -0.1822 9 6 5.3943 -0.9856 0.2808 10 1 5.9387 -0.1789 -0.1878 11 6 5.9525 -1.6688 1.3524 12 7 7.1452 -1.3341 1.7971 13 14 5.0114 -3.0645 2.1624 14 1 5.3492 -4.3449 1.4905 15 1 5.3840 -3.1451 3.5977 16 1 3.5527 -2.8126 2.0432 17 7 2.0183 -0.6905 1.1962 18 6 2.1470 -0.0182 2.3572 19 8 1.8589 1.1587 2.4115 20 6 2.6488 -0.7286 3.5878 21 7 2.6987 0.2128 4.7091 22 6 3.8152 0.9877 5.0250 23 6 5.0639 1.0787 4.4127 24 6 6.0202 1.9367 4.9146 25 6 5.7475 2.7161 6.0240 26 6 4.5080 2.6354 6.6340 27 6 3.5516 1.7798 6.1351 28 6 2.1356 1.4623 6.5575 29 6 1.6763 0.4251 5.5548 30 8 0.5895 -0.1121 5.5206 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 0.5139 0.8900 34 1 1.7517 -1.7715 -1.2055 35 1 1.6055 -0.2617 -2.1369 36 1 5.1509 -1.1485 -2.6697 37 1 3.7724 -2.2741 -2.6699 38 1 3.6264 -0.6887 -3.4656 39 1 3.6648 -2.0584 0.2387 40 1 7.5354 -1.8118 2.5457 41 1 2.2490 -1.6317 1.1527 42 1 1.9759 -1.5505 3.8326 43 1 3.6480 -1.1213 3.3986 44 1 5.2845 0.4732 3.5461 45 1 6.9878 1.9998 4.4387 46 1 6.4999 3.3860 6.4132 47 1 4.2910 3.2428 7.5003 48 1 1.5108 2.3535 6.4992 49 1 2.1190 1.0508 7.5667 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135554250.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:39 Heat of formation + Delta-G solvation = -10.392647 kcal Electronic energy + Delta-G solvation = -32211.093016 eV Core-core repulsion = 28139.107056 eV Total energy + Delta-G solvation = -4071.985960 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.44137 -39.43821 -38.20331 -37.06375 -35.60245 -34.37431 -33.00333 -32.35406 -31.13384 -30.02974 -29.19481 -27.92879 -27.04161 -26.43240 -23.45584 -22.40452 -21.84553 -21.43083 -20.63599 -20.19714 -19.55979 -17.68324 -17.23371 -17.17409 -16.75300 -15.95305 -15.65500 -15.53640 -14.91802 -14.80649 -14.46024 -14.16105 -13.85473 -13.74031 -13.55834 -13.44784 -13.14864 -12.94961 -12.87388 -12.74142 -12.55662 -12.29826 -12.14354 -12.10380 -11.88022 -11.78678 -11.67178 -11.15645 -11.03587 -10.86258 -10.68963 -10.64032 -10.56470 -10.37567 -10.08698 -9.98272 -9.72261 -9.43572 -9.11710 -8.64225 -8.62150 -7.74046 -7.37030 -5.89469 -3.23487 1.36949 1.56323 2.49638 2.77606 2.95322 2.99430 3.17772 3.27030 3.62381 4.02795 4.23902 4.37032 4.46202 4.87688 4.96579 5.04655 5.14043 5.19758 5.23778 5.27583 5.31803 5.36798 5.39616 5.42808 5.49303 5.51079 5.69856 5.70851 5.80937 5.84632 5.92290 5.99225 6.04844 6.08983 6.23839 6.26277 6.32599 6.34805 6.43297 6.55362 6.69320 6.71812 6.80323 6.88572 6.94510 6.96467 7.29980 7.81947 7.87755 7.99889 8.28712 8.58667 9.05833 9.77666 9.98620 11.28737 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010203 B = 0.005072 C = 0.004074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2743.725526 B = 5518.983122 C = 6871.495045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.150 3.850 3 H 0.087 0.913 4 C -0.136 4.136 5 C 0.175 3.825 6 H 0.057 0.943 7 C -0.164 4.164 8 N -0.743 5.743 9 C -0.229 4.229 10 H 0.091 0.909 11 C 0.004 3.996 12 N -0.928 5.928 13 Si 0.866 3.134 14 H -0.283 1.283 15 H -0.287 1.287 16 H -0.284 1.284 17 N -0.701 5.701 18 C 0.513 3.487 19 O -0.538 6.538 20 C 0.085 3.915 21 N -0.528 5.528 22 C 0.148 3.852 23 C -0.119 4.119 24 C -0.078 4.078 25 C -0.145 4.145 26 C -0.075 4.075 27 C -0.148 4.148 28 C -0.107 4.107 29 C 0.530 3.470 30 O -0.511 6.511 31 H 0.053 0.947 32 H 0.062 0.938 33 H 0.057 0.943 34 H 0.063 0.937 35 H 0.079 0.921 36 H 0.057 0.943 37 H 0.044 0.956 38 H 0.039 0.961 39 H 0.353 0.647 40 H 0.259 0.741 41 H 0.398 0.602 42 H 0.111 0.889 43 H 0.117 0.883 44 H 0.141 0.859 45 H 0.133 0.867 46 H 0.126 0.874 47 H 0.124 0.876 48 H 0.121 0.879 49 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.873 3.950 4.389 9.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.045 3.955 3 H 0.105 0.895 4 C -0.175 4.175 5 C 0.066 3.934 6 H 0.075 0.925 7 C -0.224 4.224 8 N -0.387 5.387 9 C -0.359 4.359 10 H 0.109 0.891 11 C -0.191 4.191 12 N -0.576 5.576 13 Si 0.698 3.302 14 H -0.210 1.210 15 H -0.213 1.213 16 H -0.212 1.212 17 N -0.355 5.355 18 C 0.298 3.702 19 O -0.415 6.415 20 C -0.041 4.041 21 N -0.249 5.249 22 C 0.053 3.947 23 C -0.140 4.140 24 C -0.096 4.096 25 C -0.163 4.163 26 C -0.094 4.094 27 C -0.151 4.151 28 C -0.146 4.146 29 C 0.320 3.680 30 O -0.386 6.386 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.098 0.902 36 H 0.077 0.923 37 H 0.063 0.937 38 H 0.058 0.942 39 H 0.187 0.813 40 H 0.070 0.930 41 H 0.236 0.764 42 H 0.129 0.871 43 H 0.135 0.865 44 H 0.159 0.841 45 H 0.151 0.849 46 H 0.144 0.856 47 H 0.142 0.858 48 H 0.138 0.862 49 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -8.533 4.506 4.374 10.595 hybrid contribution -0.294 -1.804 0.331 1.857 sum -8.827 2.702 4.705 10.361 Atomic orbital electron populations 1.22204 0.96018 1.01702 1.02168 1.20868 0.92695 0.97887 0.84056 0.89460 1.22250 0.97792 1.00592 0.96834 1.20256 0.89414 0.96215 0.87505 0.92483 1.22384 1.02017 1.00179 0.97807 1.42856 1.19307 1.40099 1.36434 1.19101 0.91455 1.14426 1.10913 0.89089 1.24603 0.96538 0.98959 0.99000 1.69663 1.15613 1.43392 1.28947 0.87052 0.78428 0.84888 0.79834 1.21025 1.21321 1.21224 1.46072 1.66413 1.14068 1.08983 1.20484 0.77505 0.87541 0.84701 1.90662 1.50208 1.15544 1.85052 1.21657 1.05216 0.92007 0.85207 1.45341 1.13141 1.39115 1.27303 1.18172 0.88323 0.92788 0.95390 1.20788 0.90645 1.01165 1.01370 1.20968 0.99025 0.94275 0.95353 1.21041 0.96765 1.01215 0.97327 1.20130 0.92299 0.97370 0.99582 1.19710 0.95995 1.00900 0.98449 1.20966 0.94264 0.99521 0.99824 1.20644 0.82967 0.82410 0.81952 1.90738 1.20856 1.53190 1.73830 0.92816 0.91853 0.92363 0.91825 0.90239 0.92349 0.93705 0.94177 0.81311 0.93031 0.76420 0.87053 0.86545 0.84135 0.84896 0.85637 0.85797 0.86163 0.86307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.15 9.48 37.16 0.35 -1.80 16 2 C 0.15 2.30 2.57 -67.94 -0.17 2.12 16 3 H 0.09 1.53 7.58 -51.93 -0.39 1.14 16 4 C -0.14 -1.87 4.43 -26.74 -0.12 -1.99 16 5 C 0.18 3.00 2.89 -67.93 -0.20 2.80 16 6 H 0.06 1.07 8.08 -51.93 -0.42 0.65 16 7 C -0.16 -2.59 9.49 37.16 0.35 -2.24 16 8 N -0.74 -15.16 3.65 -53.43 -0.19 -15.35 16 9 C -0.23 -5.71 10.41 -15.06 -0.16 -5.87 16 10 H 0.09 2.53 8.06 -52.48 -0.42 2.11 16 11 C 0.00 0.11 5.50 -17.43 -0.10 0.01 16 12 N -0.93 -26.07 13.97 55.49 0.78 -25.29 16 13 Si 0.87 19.26 25.13 -169.99 -4.27 14.99 16 14 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 15 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 16 H -0.28 -5.40 4.60 56.52 0.26 -5.14 16 17 N -0.70 -12.08 3.80 -53.81 -0.20 -12.28 16 18 C 0.51 10.02 7.86 -10.99 -0.09 9.93 16 19 O -0.54 -11.90 16.09 5.56 0.09 -11.81 16 20 C 0.08 1.57 5.78 -5.19 -0.03 1.54 16 21 N -0.53 -9.63 2.22 -114.53 -0.25 -9.88 16 22 C 0.15 2.62 6.69 -83.69 -0.56 2.06 16 23 C -0.12 -2.19 9.74 -39.27 -0.38 -2.57 16 24 C -0.08 -1.21 10.01 -39.67 -0.40 -1.60 16 25 C -0.14 -1.85 10.07 -39.50 -0.40 -2.25 16 26 C -0.08 -0.93 10.04 -39.73 -0.40 -1.33 16 27 C -0.15 -2.15 6.35 -104.36 -0.66 -2.81 16 28 C -0.11 -1.39 6.88 -28.48 -0.20 -1.59 16 29 C 0.53 9.20 8.23 -10.82 -0.09 9.11 16 30 O -0.51 -9.98 17.67 5.56 0.10 -9.89 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.35 6.95 3.78 -40.82 -0.15 6.80 16 40 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 41 H 0.40 6.64 5.11 -40.82 -0.21 6.44 16 42 H 0.11 1.86 7.95 -51.93 -0.41 1.45 16 43 H 0.12 2.27 4.47 -51.92 -0.23 2.04 16 44 H 0.14 3.00 7.70 -52.49 -0.40 2.60 16 45 H 0.13 1.95 8.06 -52.48 -0.42 1.52 16 46 H 0.13 1.24 8.06 -52.49 -0.42 0.81 16 47 H 0.12 1.13 8.06 -52.48 -0.42 0.71 16 48 H 0.12 1.37 8.14 -51.93 -0.42 0.94 16 49 H 0.12 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 394.40 15.07 5.94 5.94 Total: -1.00 -31.28 394.40 -8.68 -39.96 By element: Atomic # 1 Polarization: 27.50 SS G_CDS: -7.42 Total: 20.08 kcal Atomic # 6 Polarization: 6.77 SS G_CDS: -3.24 Total: 3.53 kcal Atomic # 7 Polarization: -62.93 SS G_CDS: 0.12 Total: -62.81 kcal Atomic # 8 Polarization: -21.88 SS G_CDS: 0.19 Total: -21.69 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -4.27 Total: 14.99 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -31.28 -8.68 -39.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135554250.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.568 kcal (2) G-P(sol) polarization free energy of solvation -31.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds