Wall clock time and date at job start Wed Apr 1 2020 04:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 5 5 C 1.52998 * 109.47705 * 174.99884 * 4 2 1 6 6 H 1.08998 * 109.47140 * 305.00658 * 5 4 2 7 7 C 1.52997 * 109.47892 * 185.00069 * 5 4 2 8 8 N 1.46505 * 109.46856 * 64.99701 * 5 4 2 9 9 C 1.36936 * 120.00345 * 204.99948 * 8 5 4 10 10 H 1.08009 * 119.99932 * 0.02562 * 9 8 5 11 11 C 1.38804 * 120.00306 * 180.02562 * 9 8 5 12 12 N 1.31622 * 119.99899 * 179.97438 * 11 9 8 13 13 Si 1.86804 * 119.99926 * 0.02562 * 11 9 8 14 14 H 1.48498 * 109.47179 * 89.99614 * 13 11 9 15 15 H 1.48501 * 109.46725 * 209.99819 * 13 11 9 16 16 H 1.48503 * 109.46845 * 329.99362 * 13 11 9 17 17 N 1.46497 * 109.47188 * 119.99573 * 2 1 3 18 18 C 1.34777 * 120.00376 * 275.00479 * 17 2 1 19 19 O 1.21279 * 119.99824 * 359.97438 * 18 17 2 20 20 C 1.50699 * 120.00179 * 179.97438 * 18 17 2 21 21 N 1.46499 * 109.47367 * 179.97438 * 20 18 17 22 22 C 1.39530 * 123.87830 * 269.73062 * 21 20 18 23 23 C 1.39368 * 130.82517 * 0.60325 * 22 21 20 24 24 C 1.37935 * 120.12809 * 179.69984 * 23 22 21 25 25 C 1.38302 * 120.37788 * 359.75573 * 24 23 22 26 26 C 1.38386 * 119.82856 * 359.97438 * 25 24 23 27 27 C 1.37684 * 119.91272 * 0.02562 * 26 25 24 28 28 C 1.51136 * 132.84990 * 179.97438 * 27 26 25 29 29 C 1.34376 * 123.87097 * 90.02353 * 21 20 18 30 30 O 1.21281 * 126.44698 * 359.94684 * 29 21 20 31 31 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 33 33 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 34 34 H 1.09001 * 109.47359 * 295.00205 * 4 2 1 35 35 H 1.09002 * 109.46906 * 55.00224 * 4 2 1 36 36 H 1.08994 * 109.47852 * 180.02562 * 7 5 4 37 37 H 1.08998 * 109.47208 * 300.00546 * 7 5 4 38 38 H 1.09002 * 109.46738 * 59.99498 * 7 5 4 39 39 H 0.96999 * 119.99579 * 25.01299 * 8 5 4 40 40 H 0.97002 * 119.99758 * 180.02562 * 12 11 9 41 41 H 0.97006 * 119.99921 * 94.99902 * 17 2 1 42 42 H 1.08995 * 109.47183 * 300.00111 * 20 18 17 43 43 H 1.09009 * 109.47183 * 59.99391 * 20 18 17 44 44 H 1.07995 * 119.92953 * 359.44835 * 23 22 21 45 45 H 1.08007 * 119.81101 * 179.72780 * 24 23 22 46 46 H 1.08001 * 120.08332 * 179.97438 * 25 24 23 47 47 H 1.08003 * 120.04874 * 180.02562 * 26 25 24 48 48 H 1.08996 * 110.51055 * 61.38709 * 28 27 26 49 49 H 1.09001 * 110.62679 * 298.73701 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2491 5 6 3.5648 -0.6133 -1.3136 6 1 3.8571 0.4358 -1.2677 7 6 4.0646 -1.2250 -2.6239 8 7 4.1537 -1.3341 -0.1822 9 6 5.3943 -0.9856 0.2808 10 1 5.9387 -0.1789 -0.1878 11 6 5.9525 -1.6688 1.3524 12 7 7.1452 -1.3341 1.7971 13 14 5.0114 -3.0645 2.1624 14 1 5.3492 -4.3449 1.4905 15 1 5.3840 -3.1451 3.5977 16 1 3.5527 -2.8126 2.0432 17 7 2.0183 -0.6905 1.1962 18 6 2.1470 -0.0182 2.3572 19 8 1.8589 1.1587 2.4115 20 6 2.6488 -0.7286 3.5878 21 7 2.6987 0.2128 4.7091 22 6 3.8152 0.9877 5.0250 23 6 5.0639 1.0787 4.4127 24 6 6.0202 1.9367 4.9146 25 6 5.7475 2.7161 6.0240 26 6 4.5080 2.6354 6.6340 27 6 3.5516 1.7798 6.1351 28 6 2.1356 1.4623 6.5575 29 6 1.6763 0.4251 5.5548 30 8 0.5895 -0.1121 5.5206 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 0.5139 0.8900 34 1 1.7517 -1.7715 -1.2055 35 1 1.6055 -0.2617 -2.1369 36 1 5.1509 -1.1485 -2.6697 37 1 3.7724 -2.2741 -2.6699 38 1 3.6264 -0.6887 -3.4656 39 1 3.6648 -2.0584 0.2387 40 1 7.5354 -1.8118 2.5457 41 1 2.2490 -1.6317 1.1527 42 1 1.9759 -1.5505 3.8326 43 1 3.6480 -1.1213 3.3986 44 1 5.2845 0.4732 3.5461 45 1 6.9878 1.9998 4.4387 46 1 6.4999 3.3860 6.4132 47 1 4.2910 3.2428 7.5003 48 1 1.5108 2.3535 6.4992 49 1 2.1190 1.0508 7.5667 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135554250.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:38 Heat of formation + Delta-G solvation = -30.100260 kcal Electronic energy + Delta-G solvation = -32211.947602 eV Core-core repulsion = 28139.107056 eV Total energy + Delta-G solvation = -4072.840547 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -42.71251 -40.88876 -39.47033 -38.55066 -36.91356 -35.95297 -34.38478 -33.99641 -32.63597 -31.33041 -30.74271 -29.14330 -28.29530 -27.64565 -25.33009 -23.64279 -23.13911 -22.63774 -22.09139 -21.56631 -20.97643 -19.59219 -18.65139 -18.50851 -18.06238 -17.31225 -16.85889 -16.81846 -16.59850 -16.29177 -16.07552 -15.42796 -15.18604 -15.07801 -15.04005 -14.86853 -14.47979 -14.27597 -14.18658 -14.17102 -13.99688 -13.64815 -13.46681 -13.35867 -13.20709 -12.94449 -12.79203 -12.76761 -12.57873 -12.42753 -12.13204 -11.92358 -11.87298 -11.81329 -11.71616 -11.50338 -11.30716 -11.02022 -10.89311 -10.10444 -9.80525 -9.21974 -8.99483 -7.96683 -5.27558 0.18355 0.38603 1.10684 1.21718 1.29254 1.38575 1.47904 1.53201 2.24037 2.42787 2.83088 3.07538 3.33097 3.33480 3.49160 3.70664 3.70973 3.76093 3.86244 3.87442 4.04350 4.07025 4.25747 4.30859 4.41374 4.47641 4.48332 4.57198 4.58148 4.74978 4.78916 4.79835 4.83247 4.91777 4.98041 5.05710 5.06568 5.07948 5.27589 5.33155 5.42977 5.47911 5.53671 5.58849 5.61164 5.76266 5.83176 6.09383 6.24563 6.37755 6.67574 7.09186 7.12030 7.86271 8.06516 9.24434 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010203 B = 0.005072 C = 0.004074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2743.725526 B = 5518.983122 C = 6871.495045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.144 3.856 3 H 0.058 0.942 4 C -0.121 4.121 5 C 0.167 3.833 6 H 0.031 0.969 7 C -0.155 4.155 8 N -0.741 5.741 9 C -0.213 4.213 10 H 0.048 0.952 11 C -0.051 4.051 12 N -0.973 5.973 13 Si 0.924 3.076 14 H -0.286 1.286 15 H -0.300 1.300 16 H -0.242 1.242 17 N -0.696 5.696 18 C 0.508 3.492 19 O -0.571 6.571 20 C 0.081 3.919 21 N -0.537 5.537 22 C 0.116 3.884 23 C -0.150 4.150 24 C -0.093 4.093 25 C -0.130 4.130 26 C -0.060 4.060 27 C -0.141 4.141 28 C -0.093 4.093 29 C 0.517 3.483 30 O -0.542 6.542 31 H 0.071 0.929 32 H 0.090 0.910 33 H 0.032 0.968 34 H 0.085 0.915 35 H 0.116 0.884 36 H 0.027 0.973 37 H 0.055 0.945 38 H 0.073 0.927 39 H 0.360 0.640 40 H 0.253 0.747 41 H 0.401 0.599 42 H 0.127 0.873 43 H 0.100 0.900 44 H 0.091 0.909 45 H 0.128 0.872 46 H 0.165 0.835 47 H 0.174 0.826 48 H 0.146 0.854 49 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.476 4.325 5.489 12.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.040 3.960 3 H 0.076 0.924 4 C -0.159 4.159 5 C 0.059 3.941 6 H 0.049 0.951 7 C -0.214 4.214 8 N -0.386 5.386 9 C -0.344 4.344 10 H 0.067 0.933 11 C -0.243 4.243 12 N -0.624 5.624 13 Si 0.754 3.246 14 H -0.213 1.213 15 H -0.227 1.227 16 H -0.167 1.167 17 N -0.349 5.349 18 C 0.293 3.707 19 O -0.450 6.450 20 C -0.045 4.045 21 N -0.258 5.258 22 C 0.021 3.979 23 C -0.171 4.171 24 C -0.112 4.112 25 C -0.148 4.148 26 C -0.078 4.078 27 C -0.144 4.144 28 C -0.131 4.131 29 C 0.309 3.691 30 O -0.420 6.420 31 H 0.090 0.910 32 H 0.109 0.891 33 H 0.051 0.949 34 H 0.103 0.897 35 H 0.134 0.866 36 H 0.046 0.954 37 H 0.074 0.926 38 H 0.091 0.909 39 H 0.195 0.805 40 H 0.062 0.938 41 H 0.239 0.761 42 H 0.145 0.855 43 H 0.118 0.882 44 H 0.110 0.890 45 H 0.146 0.854 46 H 0.182 0.818 47 H 0.191 0.809 48 H 0.163 0.837 49 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -11.174 4.881 5.413 13.341 hybrid contribution 0.620 -1.784 -0.091 1.891 sum -10.554 3.097 5.322 12.218 Atomic orbital electron populations 1.22102 0.93647 1.02910 1.02287 1.21045 0.94466 0.96473 0.84002 0.92363 1.22183 0.94472 1.02035 0.97258 1.20473 0.92067 0.94515 0.87039 0.95053 1.22246 1.00130 1.01208 0.97852 1.42784 1.17790 1.40557 1.37477 1.18889 0.92784 1.12572 1.10190 0.93347 1.25204 0.97432 1.01807 0.99814 1.69850 1.17816 1.45100 1.29612 0.86041 0.79798 0.81032 0.77709 1.21291 1.22722 1.16729 1.46140 1.65594 1.14110 1.09043 1.20721 0.77189 0.87266 0.85546 1.90624 1.51912 1.16867 1.85643 1.21643 1.04408 0.92854 0.85634 1.45543 1.13894 1.39128 1.27203 1.18382 0.87899 0.94446 0.97169 1.20560 0.92643 1.02743 1.01195 1.21081 0.98391 0.94822 0.96903 1.21465 0.97997 0.99992 0.95354 1.20673 0.90922 0.96126 1.00063 1.20092 0.97192 1.00132 0.97003 1.21064 0.93052 0.98995 0.99958 1.21463 0.82321 0.82885 0.82413 1.90706 1.21874 1.54630 1.74809 0.90981 0.89137 0.94851 0.89691 0.86579 0.95418 0.92552 0.90863 0.80537 0.93752 0.76075 0.85539 0.88183 0.89030 0.85369 0.81759 0.80869 0.83686 0.82579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.67 9.48 71.98 0.68 -2.98 16 2 C 0.14 4.29 2.57 44.99 0.12 4.41 16 3 H 0.06 2.09 7.58 -2.39 -0.02 2.07 16 4 C -0.12 -3.00 4.43 30.59 0.14 -2.87 16 5 C 0.17 5.65 2.89 44.99 0.13 5.78 16 6 H 0.03 1.22 8.08 -2.39 -0.02 1.20 16 7 C -0.15 -4.68 9.49 71.98 0.68 -3.99 16 8 N -0.74 -30.76 3.65 -322.94 -1.18 -31.94 16 9 C -0.21 -11.29 10.41 84.03 0.87 -10.41 16 10 H 0.05 2.94 8.06 -2.91 -0.02 2.92 16 11 C -0.05 -2.78 5.50 84.86 0.47 -2.32 16 12 N -0.97 -58.72 13.97 21.65 0.30 -58.42 16 13 Si 0.92 41.42 25.13 68.60 1.72 43.15 16 14 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 15 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 16 H -0.24 -8.87 4.60 99.48 0.46 -8.41 16 17 N -0.70 -23.93 3.80 -442.56 -1.68 -25.61 16 18 C 0.51 20.49 7.86 87.66 0.69 21.18 16 19 O -0.57 -26.35 16.09 -3.03 -0.05 -26.40 16 20 C 0.08 3.10 5.78 85.63 0.49 3.60 16 21 N -0.54 -20.05 2.22 -634.88 -1.41 -21.46 16 22 C 0.12 4.18 6.69 38.35 0.26 4.44 16 23 C -0.15 -5.98 9.74 22.47 0.22 -5.76 16 24 C -0.09 -3.02 10.01 22.21 0.22 -2.79 16 25 C -0.13 -2.99 10.07 22.32 0.22 -2.77 16 26 C -0.06 -1.24 10.04 22.17 0.22 -1.02 16 27 C -0.14 -3.80 6.35 -19.70 -0.13 -3.93 16 28 C -0.09 -2.13 6.88 29.46 0.20 -1.93 16 29 C 0.52 17.63 8.23 87.94 0.72 18.35 16 30 O -0.54 -21.03 17.67 -3.03 -0.05 -21.08 16 31 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.03 0.98 8.14 -2.38 -0.02 0.96 16 34 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.12 2.13 8.14 -2.39 -0.02 2.11 16 36 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.36 13.92 3.78 -92.71 -0.35 13.57 16 40 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 41 H 0.40 12.96 5.11 -92.70 -0.47 12.49 16 42 H 0.13 4.30 7.95 -2.39 -0.02 4.28 16 43 H 0.10 4.14 4.47 -2.38 -0.01 4.13 16 44 H 0.09 4.45 7.70 -2.91 -0.02 4.43 16 45 H 0.13 4.08 8.06 -2.91 -0.02 4.06 16 46 H 0.16 2.53 8.06 -2.91 -0.02 2.51 16 47 H 0.17 1.99 8.06 -2.91 -0.02 1.96 16 48 H 0.15 2.71 8.14 -2.39 -0.02 2.70 16 49 H 0.16 2.49 8.14 -2.39 -0.02 2.47 16 Total: -1.00 -77.42 394.40 3.77 -73.65 By element: Atomic # 1 Polarization: 51.23 SS G_CDS: -0.10 Total: 51.13 kcal Atomic # 6 Polarization: 10.76 SS G_CDS: 6.22 Total: 16.98 kcal Atomic # 7 Polarization: -133.46 SS G_CDS: -3.97 Total: -137.42 kcal Atomic # 8 Polarization: -47.38 SS G_CDS: -0.10 Total: -47.48 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 1.72 Total: 43.15 kcal Total: -77.42 3.77 -73.65 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135554250.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.547 kcal (2) G-P(sol) polarization free energy of solvation -77.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds