Wall clock time and date at job start Wed Apr 1 2020 04:17:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.46885 * 2 1 4 4 C 1.52997 * 109.47248 * 240.00012 * 2 1 3 5 5 C 1.53003 * 109.47310 * 175.00057 * 4 2 1 6 6 H 1.09000 * 109.46724 * 304.99989 * 5 4 2 7 7 C 1.52999 * 109.47189 * 184.99804 * 5 4 2 8 8 N 1.46504 * 109.47003 * 64.99636 * 5 4 2 9 9 C 1.36933 * 119.99869 * 205.00216 * 8 5 4 10 10 H 1.08001 * 120.00255 * 0.02562 * 9 8 5 11 11 C 1.38813 * 120.00178 * 179.97438 * 9 8 5 12 12 N 1.31619 * 120.00339 * 179.97438 * 11 9 8 13 13 Si 1.86807 * 119.99857 * 0.02562 * 11 9 8 14 14 H 1.48502 * 109.47057 * 89.99393 * 13 11 9 15 15 H 1.48492 * 109.47151 * 209.99638 * 13 11 9 16 16 H 1.48498 * 109.46780 * 329.99617 * 13 11 9 17 17 N 1.46496 * 109.46916 * 119.99737 * 2 1 3 18 18 C 1.34777 * 120.00271 * 274.99861 * 17 2 1 19 19 O 1.21278 * 119.99854 * 0.02562 * 18 17 2 20 20 C 1.50703 * 120.00161 * 180.02562 * 18 17 2 21 21 C 1.53000 * 109.46912 * 180.02562 * 20 18 17 22 22 C 1.50706 * 109.46735 * 180.02562 * 21 20 18 23 23 N 1.29905 * 124.85984 * 89.69528 * 22 21 20 24 24 C 1.36051 * 108.80120 * 179.89534 * 23 22 21 25 25 C 1.39586 * 133.80558 * 180.10132 * 24 23 22 26 26 C 1.37685 * 119.73158 * 180.25765 * 25 24 23 27 27 C 1.38724 * 120.42114 * 0.04486 * 26 25 24 28 28 C 1.37908 * 120.47385 * 359.95712 * 27 26 25 29 29 C 1.38668 * 119.87735 * 0.02562 * 28 27 26 30 30 O 1.34230 * 124.84938 * 269.99399 * 22 21 20 31 31 H 1.08991 * 109.47341 * 299.99907 * 1 2 3 32 32 H 1.09000 * 109.46953 * 60.00208 * 1 2 3 33 33 H 1.09005 * 109.46885 * 180.02562 * 1 2 3 34 34 H 1.09004 * 109.47067 * 294.99832 * 4 2 1 35 35 H 1.09001 * 109.47475 * 54.99783 * 4 2 1 36 36 H 1.08998 * 109.47032 * 299.99410 * 7 5 4 37 37 H 1.08998 * 109.47113 * 59.99982 * 7 5 4 38 38 H 1.09003 * 109.46504 * 179.97438 * 7 5 4 39 39 H 0.96997 * 119.99823 * 25.00558 * 8 5 4 40 40 H 0.97002 * 119.99743 * 180.02562 * 12 11 9 41 41 H 0.97005 * 120.00266 * 95.00444 * 17 2 1 42 42 H 1.09002 * 109.47152 * 60.00245 * 20 18 17 43 43 H 1.09001 * 109.46980 * 300.00345 * 20 18 17 44 44 H 1.09001 * 109.47194 * 299.99742 * 21 20 18 45 45 H 1.08992 * 109.47399 * 59.99914 * 21 20 18 46 46 H 1.08000 * 120.13645 * 0.30470 * 25 24 23 47 47 H 1.07993 * 119.79030 * 180.02562 * 26 25 24 48 48 H 1.07993 * 119.75786 * 179.97438 * 27 26 25 49 49 H 1.07996 * 120.06230 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5649 -0.6133 -1.3137 6 1 3.8571 0.4358 -1.2677 7 6 4.0646 -1.2251 -2.6240 8 7 4.1537 -1.3342 -0.1823 9 6 5.3943 -0.9855 0.2807 10 1 5.9386 -0.1788 -0.1878 11 6 5.9521 -1.6681 1.3530 12 7 7.1448 -1.3334 1.7978 13 14 5.0105 -3.0629 2.1640 14 1 5.3482 -4.3440 1.4930 15 1 5.3827 -3.1427 3.5993 16 1 3.5520 -2.8108 2.0441 17 7 2.0183 -0.6905 1.1962 18 6 2.1470 -0.0182 2.3571 19 8 1.8582 1.1584 2.4117 20 6 2.6499 -0.7284 3.5875 21 6 2.7006 0.2546 4.7589 22 6 3.2041 -0.4556 5.9891 23 7 4.4534 -0.5517 6.3319 24 6 4.5365 -1.2554 7.4933 25 6 5.5978 -1.6550 8.3072 26 6 5.3466 -2.3836 9.4481 27 6 4.0465 -2.7232 9.7927 28 6 2.9883 -2.3352 8.9980 29 6 3.2229 -1.6007 7.8455 30 8 2.4260 -1.0841 6.8843 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 1.7517 -1.7715 -1.2055 35 1 1.6054 -0.2618 -2.1370 36 1 3.7724 -2.2742 -2.6698 37 1 3.6265 -0.6887 -3.4657 38 1 5.1509 -1.1477 -2.6700 39 1 3.6648 -2.0584 0.2387 40 1 7.5346 -1.8107 2.5469 41 1 2.2491 -1.6317 1.1527 42 1 3.6492 -1.1202 3.3980 43 1 1.9777 -1.5508 3.8325 44 1 3.3726 1.0771 4.5140 45 1 1.7012 0.6460 4.9483 46 1 6.6118 -1.3931 8.0434 47 1 6.1670 -2.6929 10.0787 48 1 3.8618 -3.2954 10.6898 49 1 1.9787 -2.6029 9.2728 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001146259033.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:22 Heat of formation + Delta-G solvation = 12.154296 kcal Electronic energy + Delta-G solvation = -30827.046752 eV Core-core repulsion = 26756.038501 eV Total energy + Delta-G solvation = -4071.008252 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.24347 -39.61471 -38.10431 -37.09317 -34.96056 -34.36287 -33.35193 -32.28709 -30.94565 -30.76069 -29.38265 -28.97698 -26.46275 -25.61091 -23.35625 -23.19804 -22.31529 -21.61362 -20.83511 -20.56769 -19.58900 -18.11648 -17.57810 -17.35594 -16.97727 -16.58137 -16.01522 -15.53523 -15.28740 -14.81597 -14.40312 -14.25937 -14.05671 -13.93686 -13.46158 -13.38993 -13.21109 -12.84707 -12.70253 -12.58645 -12.46291 -12.35516 -12.20994 -12.04621 -11.97374 -11.77808 -11.58893 -11.37576 -11.21986 -11.06123 -10.79801 -10.72517 -10.53214 -10.38196 -10.25690 -10.00961 -9.60909 -9.46680 -9.01386 -8.91344 -8.56407 -8.49786 -7.26265 -5.77514 -3.11916 0.60505 1.11764 2.37439 2.45828 3.05751 3.06545 3.29884 3.39311 3.52033 3.59971 3.89186 4.43767 4.50519 4.69655 4.88319 4.93609 4.95845 5.02804 5.03779 5.16267 5.22728 5.29518 5.31807 5.37925 5.49696 5.53271 5.57190 5.73399 5.74869 5.84041 5.86745 5.91178 6.00528 6.02456 6.04354 6.13540 6.15630 6.20618 6.24471 6.24768 6.31524 6.39349 6.46287 6.53716 6.77771 6.93801 6.99910 7.67483 7.91487 7.98625 8.41030 8.64339 9.17789 9.89508 10.09204 11.41395 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013172 B = 0.003405 C = 0.002904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2125.190172 B = 8220.035903 C = 9639.169471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.148 3.852 3 H 0.088 0.912 4 C -0.136 4.136 5 C 0.175 3.825 6 H 0.057 0.943 7 C -0.164 4.164 8 N -0.741 5.741 9 C -0.236 4.236 10 H 0.090 0.910 11 C 0.009 3.991 12 N -0.927 5.927 13 Si 0.875 3.125 14 H -0.288 1.288 15 H -0.288 1.288 16 H -0.283 1.283 17 N -0.703 5.703 18 C 0.534 3.466 19 O -0.552 6.552 20 C -0.146 4.146 21 C -0.011 4.011 22 C 0.257 3.743 23 N -0.466 5.466 24 C 0.025 3.975 25 C -0.059 4.059 26 C -0.123 4.123 27 C -0.099 4.099 28 C -0.094 4.094 29 C 0.002 3.998 30 O -0.215 6.215 31 H 0.058 0.942 32 H 0.062 0.938 33 H 0.052 0.948 34 H 0.062 0.938 35 H 0.078 0.922 36 H 0.043 0.957 37 H 0.039 0.961 38 H 0.057 0.943 39 H 0.353 0.647 40 H 0.259 0.741 41 H 0.399 0.601 42 H 0.108 0.892 43 H 0.091 0.909 44 H 0.124 0.876 45 H 0.105 0.895 46 H 0.138 0.862 47 H 0.136 0.864 48 H 0.138 0.862 49 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.488 -2.600 8.823 15.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.043 3.957 3 H 0.107 0.893 4 C -0.175 4.175 5 C 0.066 3.934 6 H 0.075 0.925 7 C -0.224 4.224 8 N -0.386 5.386 9 C -0.367 4.367 10 H 0.108 0.892 11 C -0.187 4.187 12 N -0.575 5.575 13 Si 0.707 3.293 14 H -0.216 1.216 15 H -0.215 1.215 16 H -0.210 1.210 17 N -0.356 5.356 18 C 0.320 3.680 19 O -0.431 6.431 20 C -0.187 4.187 21 C -0.050 4.050 22 C 0.046 3.954 23 N -0.195 5.195 24 C -0.086 4.086 25 C -0.078 4.078 26 C -0.143 4.143 27 C -0.117 4.117 28 C -0.113 4.113 29 C -0.048 4.048 30 O -0.107 6.107 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.097 0.903 36 H 0.062 0.938 37 H 0.058 0.942 38 H 0.076 0.924 39 H 0.187 0.813 40 H 0.070 0.930 41 H 0.236 0.764 42 H 0.126 0.874 43 H 0.110 0.890 44 H 0.142 0.858 45 H 0.123 0.877 46 H 0.156 0.844 47 H 0.154 0.846 48 H 0.156 0.844 49 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -11.945 -1.403 8.566 14.766 hybrid contribution -0.829 -2.037 0.944 2.393 sum -12.773 -3.440 9.510 16.292 Atomic orbital electron populations 1.22204 0.96105 1.01589 1.02152 1.20874 0.92595 0.97996 0.84230 0.89345 1.22252 0.97859 1.00524 0.96874 1.20251 0.89375 0.96264 0.87534 0.92487 1.22397 1.02052 1.00131 0.97860 1.42816 1.19303 1.40101 1.36364 1.19045 0.91601 1.14711 1.11301 0.89201 1.24608 0.96445 0.98998 0.98681 1.69645 1.15822 1.43372 1.28666 0.86911 0.78502 0.84109 0.79760 1.21581 1.21474 1.21032 1.46110 1.66197 1.14174 1.09075 1.19966 0.76689 0.86932 0.84403 1.90646 1.51293 1.15702 1.85474 1.21778 1.04992 0.99066 0.92817 1.20007 1.04178 0.96770 0.84013 1.26608 0.83983 0.92568 0.92261 1.70792 1.18308 1.18690 1.11663 1.20017 0.93892 1.00568 0.94154 1.20422 0.97981 0.96614 0.92766 1.21033 0.97238 0.99131 0.96868 1.20978 0.91775 0.99640 0.99308 1.19842 1.00700 0.99276 0.91469 1.20385 0.89799 1.01579 0.93057 1.84499 1.37918 1.57788 1.30474 0.92302 0.91915 0.92928 0.91925 0.90323 0.93756 0.94233 0.92364 0.81344 0.93000 0.76361 0.87384 0.89025 0.85835 0.87708 0.84424 0.84585 0.84382 0.84879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.96 9.48 37.16 0.35 -1.61 16 2 C 0.15 2.18 2.57 -67.93 -0.17 2.00 16 3 H 0.09 1.49 7.58 -51.93 -0.39 1.10 16 4 C -0.14 -1.87 4.43 -26.73 -0.12 -1.99 16 5 C 0.17 3.08 2.89 -67.93 -0.20 2.88 16 6 H 0.06 1.09 8.08 -51.93 -0.42 0.67 16 7 C -0.16 -2.68 9.49 37.16 0.35 -2.33 16 8 N -0.74 -15.82 3.65 -53.42 -0.19 -16.01 16 9 C -0.24 -6.30 10.41 -15.06 -0.16 -6.45 16 10 H 0.09 2.65 8.06 -52.49 -0.42 2.22 16 11 C 0.01 0.24 5.50 -17.43 -0.10 0.14 16 12 N -0.93 -28.63 13.97 55.49 0.78 -27.85 16 13 Si 0.87 20.95 25.12 -169.99 -4.27 16.68 16 14 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 15 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 16 H -0.28 -5.69 4.59 56.52 0.26 -5.43 16 17 N -0.70 -11.65 3.80 -53.81 -0.20 -11.85 16 18 C 0.53 9.59 7.79 -10.98 -0.09 9.50 16 19 O -0.55 -10.92 15.64 5.56 0.09 -10.83 16 20 C -0.15 -2.48 5.24 -27.88 -0.15 -2.62 16 21 C -0.01 -0.18 5.13 -27.88 -0.14 -0.32 16 22 C 0.26 4.43 7.49 -13.09 -0.10 4.33 16 23 N -0.47 -9.03 11.34 -8.70 -0.10 -9.13 16 24 C 0.03 0.43 7.24 -84.71 -0.61 -0.18 16 25 C -0.06 -0.82 10.10 -39.28 -0.40 -1.22 16 26 C -0.12 -1.28 10.02 -39.60 -0.40 -1.68 16 27 C -0.10 -0.94 10.03 -39.52 -0.40 -1.34 16 28 C -0.09 -1.08 10.06 -39.54 -0.40 -1.48 16 29 C 0.00 0.03 7.43 -38.64 -0.29 -0.25 16 30 O -0.21 -3.46 10.77 3.60 0.04 -3.42 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.35 7.23 3.78 -40.82 -0.15 7.07 16 40 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 41 H 0.40 6.59 5.10 -40.82 -0.21 6.38 16 42 H 0.11 2.18 4.99 -51.93 -0.26 1.92 16 43 H 0.09 1.33 8.14 -51.93 -0.42 0.90 16 44 H 0.12 2.06 8.10 -51.93 -0.42 1.64 16 45 H 0.10 1.40 8.10 -51.93 -0.42 0.98 16 46 H 0.14 1.77 8.06 -52.49 -0.42 1.35 16 47 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 48 H 0.14 0.83 8.06 -52.49 -0.42 0.40 16 49 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 LS Contribution 396.00 15.07 5.97 5.97 Total: -1.00 -33.74 396.00 -8.37 -42.11 By element: Atomic # 1 Polarization: 24.42 SS G_CDS: -7.47 Total: 16.95 kcal Atomic # 6 Polarization: 0.39 SS G_CDS: -3.00 Total: -2.61 kcal Atomic # 7 Polarization: -65.12 SS G_CDS: 0.28 Total: -64.85 kcal Atomic # 8 Polarization: -14.38 SS G_CDS: 0.13 Total: -14.25 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.27 Total: 16.68 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.74 -8.37 -42.11 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146259033.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.263 kcal (2) G-P(sol) polarization free energy of solvation -33.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds