Wall clock time and date at job start Wed Apr 1 2020 04:17:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.46885 * 2 1 4 4 C 1.52997 * 109.47248 * 240.00012 * 2 1 3 5 5 C 1.53003 * 109.47310 * 175.00057 * 4 2 1 6 6 H 1.09000 * 109.46724 * 304.99989 * 5 4 2 7 7 C 1.52999 * 109.47189 * 184.99804 * 5 4 2 8 8 N 1.46504 * 109.47003 * 64.99636 * 5 4 2 9 9 C 1.36933 * 119.99869 * 205.00216 * 8 5 4 10 10 H 1.08001 * 120.00255 * 0.02562 * 9 8 5 11 11 C 1.38813 * 120.00178 * 179.97438 * 9 8 5 12 12 N 1.31619 * 120.00339 * 179.97438 * 11 9 8 13 13 Si 1.86807 * 119.99857 * 0.02562 * 11 9 8 14 14 H 1.48502 * 109.47057 * 89.99393 * 13 11 9 15 15 H 1.48492 * 109.47151 * 209.99638 * 13 11 9 16 16 H 1.48498 * 109.46780 * 329.99617 * 13 11 9 17 17 N 1.46496 * 109.46916 * 119.99737 * 2 1 3 18 18 C 1.34777 * 120.00271 * 274.99861 * 17 2 1 19 19 O 1.21278 * 119.99854 * 0.02562 * 18 17 2 20 20 C 1.50703 * 120.00161 * 180.02562 * 18 17 2 21 21 C 1.53000 * 109.46912 * 180.02562 * 20 18 17 22 22 C 1.50706 * 109.46735 * 180.02562 * 21 20 18 23 23 N 1.29905 * 124.85984 * 89.69528 * 22 21 20 24 24 C 1.36051 * 108.80120 * 179.89534 * 23 22 21 25 25 C 1.39586 * 133.80558 * 180.10132 * 24 23 22 26 26 C 1.37685 * 119.73158 * 180.25765 * 25 24 23 27 27 C 1.38724 * 120.42114 * 0.04486 * 26 25 24 28 28 C 1.37908 * 120.47385 * 359.95712 * 27 26 25 29 29 C 1.38668 * 119.87735 * 0.02562 * 28 27 26 30 30 O 1.34230 * 124.84938 * 269.99399 * 22 21 20 31 31 H 1.08991 * 109.47341 * 299.99907 * 1 2 3 32 32 H 1.09000 * 109.46953 * 60.00208 * 1 2 3 33 33 H 1.09005 * 109.46885 * 180.02562 * 1 2 3 34 34 H 1.09004 * 109.47067 * 294.99832 * 4 2 1 35 35 H 1.09001 * 109.47475 * 54.99783 * 4 2 1 36 36 H 1.08998 * 109.47032 * 299.99410 * 7 5 4 37 37 H 1.08998 * 109.47113 * 59.99982 * 7 5 4 38 38 H 1.09003 * 109.46504 * 179.97438 * 7 5 4 39 39 H 0.96997 * 119.99823 * 25.00558 * 8 5 4 40 40 H 0.97002 * 119.99743 * 180.02562 * 12 11 9 41 41 H 0.97005 * 120.00266 * 95.00444 * 17 2 1 42 42 H 1.09002 * 109.47152 * 60.00245 * 20 18 17 43 43 H 1.09001 * 109.46980 * 300.00345 * 20 18 17 44 44 H 1.09001 * 109.47194 * 299.99742 * 21 20 18 45 45 H 1.08992 * 109.47399 * 59.99914 * 21 20 18 46 46 H 1.08000 * 120.13645 * 0.30470 * 25 24 23 47 47 H 1.07993 * 119.79030 * 180.02562 * 26 25 24 48 48 H 1.07993 * 119.75786 * 179.97438 * 27 26 25 49 49 H 1.07996 * 120.06230 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5649 -0.6133 -1.3137 6 1 3.8571 0.4358 -1.2677 7 6 4.0646 -1.2251 -2.6240 8 7 4.1537 -1.3342 -0.1823 9 6 5.3943 -0.9855 0.2807 10 1 5.9386 -0.1788 -0.1878 11 6 5.9521 -1.6681 1.3530 12 7 7.1448 -1.3334 1.7978 13 14 5.0105 -3.0629 2.1640 14 1 5.3482 -4.3440 1.4930 15 1 5.3827 -3.1427 3.5993 16 1 3.5520 -2.8108 2.0441 17 7 2.0183 -0.6905 1.1962 18 6 2.1470 -0.0182 2.3571 19 8 1.8582 1.1584 2.4117 20 6 2.6499 -0.7284 3.5875 21 6 2.7006 0.2546 4.7589 22 6 3.2041 -0.4556 5.9891 23 7 4.4534 -0.5517 6.3319 24 6 4.5365 -1.2554 7.4933 25 6 5.5978 -1.6550 8.3072 26 6 5.3466 -2.3836 9.4481 27 6 4.0465 -2.7232 9.7927 28 6 2.9883 -2.3352 8.9980 29 6 3.2229 -1.6007 7.8455 30 8 2.4260 -1.0841 6.8843 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 1.7517 -1.7715 -1.2055 35 1 1.6054 -0.2618 -2.1370 36 1 3.7724 -2.2742 -2.6698 37 1 3.6265 -0.6887 -3.4657 38 1 5.1509 -1.1477 -2.6700 39 1 3.6648 -2.0584 0.2387 40 1 7.5346 -1.8107 2.5469 41 1 2.2491 -1.6317 1.1527 42 1 3.6492 -1.1202 3.3980 43 1 1.9777 -1.5508 3.8325 44 1 3.3726 1.0771 4.5140 45 1 1.7012 0.6460 4.9483 46 1 6.6118 -1.3931 8.0434 47 1 6.1670 -2.6929 10.0787 48 1 3.8618 -3.2954 10.6898 49 1 1.9787 -2.6029 9.2728 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001146259033.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:21 Heat of formation + Delta-G solvation = -12.546547 kcal Electronic energy + Delta-G solvation = -30828.117861 eV Core-core repulsion = 26756.038501 eV Total energy + Delta-G solvation = -4072.079361 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -44.38974 -40.99746 -39.06657 -38.53503 -36.22423 -35.88261 -34.64583 -34.10868 -32.44261 -31.71256 -30.86224 -30.22678 -27.62061 -26.84649 -25.32400 -24.23978 -23.37016 -22.81323 -22.13576 -21.96268 -21.05091 -19.58536 -19.14562 -18.55152 -18.14317 -17.84550 -17.33167 -16.66178 -16.58068 -16.50788 -16.07744 -15.36044 -15.24602 -15.08173 -14.95075 -14.66168 -14.49400 -14.40215 -14.08293 -14.01517 -13.70677 -13.54056 -13.40426 -13.28451 -13.15698 -12.93728 -12.82018 -12.59010 -12.55498 -12.41736 -12.38019 -12.27140 -12.05155 -11.80925 -11.61648 -11.55459 -11.44958 -11.00523 -10.86953 -9.96798 -9.89442 -9.55663 -9.20732 -7.99364 -5.29323 -0.43394 0.14283 1.11973 1.22919 1.30583 1.31689 1.41833 1.66071 2.27628 2.44615 2.58366 2.73237 3.33667 3.40778 3.55013 3.63558 3.77890 3.79848 3.83556 3.99737 4.06439 4.13765 4.17121 4.22163 4.30355 4.35318 4.38073 4.56331 4.65912 4.66661 4.69643 4.82210 4.84177 4.86708 4.92041 4.99693 5.05986 5.09459 5.10619 5.16068 5.25800 5.30936 5.37703 5.39737 5.60250 5.66888 5.68812 5.82959 6.22928 6.48571 6.55334 7.11936 7.26140 7.87521 8.06773 9.22735 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013172 B = 0.003405 C = 0.002904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2125.190172 B = 8220.035903 C = 9639.169471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.142 3.858 3 H 0.061 0.939 4 C -0.122 4.122 5 C 0.165 3.835 6 H 0.033 0.967 7 C -0.156 4.156 8 N -0.739 5.739 9 C -0.210 4.210 10 H 0.048 0.952 11 C -0.059 4.059 12 N -0.983 5.983 13 Si 0.940 3.060 14 H -0.288 1.288 15 H -0.316 1.316 16 H -0.229 1.229 17 N -0.701 5.701 18 C 0.529 3.471 19 O -0.576 6.576 20 C -0.143 4.143 21 C -0.003 4.003 22 C 0.249 3.751 23 N -0.515 5.515 24 C -0.020 4.020 25 C -0.089 4.089 26 C -0.107 4.107 27 C -0.079 4.079 28 C -0.095 4.095 29 C -0.019 4.019 30 O -0.215 6.215 31 H 0.043 0.957 32 H 0.086 0.914 33 H 0.070 0.930 34 H 0.083 0.917 35 H 0.115 0.885 36 H 0.055 0.945 37 H 0.074 0.926 38 H 0.024 0.976 39 H 0.361 0.639 40 H 0.251 0.749 41 H 0.400 0.600 42 H 0.075 0.925 43 H 0.121 0.879 44 H 0.103 0.897 45 H 0.130 0.870 46 H 0.132 0.868 47 H 0.175 0.825 48 H 0.189 0.811 49 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.249 -5.173 9.594 19.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.038 3.962 3 H 0.079 0.921 4 C -0.160 4.160 5 C 0.057 3.943 6 H 0.051 0.949 7 C -0.216 4.216 8 N -0.384 5.384 9 C -0.342 4.342 10 H 0.066 0.934 11 C -0.251 4.251 12 N -0.635 5.635 13 Si 0.770 3.230 14 H -0.215 1.215 15 H -0.244 1.244 16 H -0.154 1.154 17 N -0.353 5.353 18 C 0.316 3.684 19 O -0.456 6.456 20 C -0.184 4.184 21 C -0.042 4.042 22 C 0.037 3.963 23 N -0.244 5.244 24 C -0.131 4.131 25 C -0.108 4.108 26 C -0.125 4.125 27 C -0.097 4.097 28 C -0.114 4.114 29 C -0.069 4.069 30 O -0.107 6.107 31 H 0.062 0.938 32 H 0.104 0.896 33 H 0.089 0.911 34 H 0.102 0.898 35 H 0.133 0.867 36 H 0.074 0.926 37 H 0.092 0.908 38 H 0.043 0.957 39 H 0.196 0.804 40 H 0.060 0.940 41 H 0.238 0.762 42 H 0.093 0.907 43 H 0.139 0.861 44 H 0.121 0.879 45 H 0.148 0.852 46 H 0.150 0.850 47 H 0.192 0.808 48 H 0.206 0.794 49 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -15.785 -3.979 9.268 18.732 hybrid contribution 0.435 -1.174 0.731 1.450 sum -15.350 -5.153 9.999 19.031 Atomic orbital electron populations 1.22098 0.93307 1.02903 1.02604 1.21045 0.94709 0.96527 0.83932 0.92094 1.22184 0.94058 1.02094 0.97714 1.20514 0.92421 0.94540 0.86797 0.94924 1.22266 1.00031 1.01240 0.98048 1.42751 1.17535 1.40623 1.37486 1.18899 0.92987 1.12345 1.09954 0.93356 1.25317 0.97455 1.02364 0.99922 1.69864 1.18448 1.45550 1.29591 0.85798 0.80386 0.80189 0.76580 1.21533 1.24428 1.15354 1.46184 1.65686 1.14157 1.09284 1.20135 0.76530 0.86719 0.85050 1.90630 1.52501 1.16636 1.85874 1.21751 1.03556 1.00119 0.92949 1.19924 1.04907 0.95888 0.83441 1.26605 0.83807 0.93112 0.92779 1.70698 1.19855 1.20273 1.13611 1.20473 0.95933 1.02217 0.94476 1.20717 0.97292 0.98479 0.94315 1.21547 0.99224 0.96538 0.95233 1.21630 0.90485 0.97766 0.99792 1.20426 1.03060 0.97984 0.89923 1.20969 0.89001 1.02750 0.94175 1.84449 1.37735 1.57891 1.30604 0.93822 0.89569 0.91095 0.89802 0.86685 0.92562 0.90764 0.95659 0.80390 0.94046 0.76246 0.90677 0.86076 0.87860 0.85217 0.85045 0.80794 0.79398 0.81788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.11 9.48 71.98 0.68 -2.43 16 2 C 0.14 3.87 2.57 44.99 0.12 3.98 16 3 H 0.06 2.02 7.58 -2.38 -0.02 2.00 16 4 C -0.12 -2.89 4.43 30.59 0.14 -2.76 16 5 C 0.16 5.59 2.89 44.99 0.13 5.72 16 6 H 0.03 1.27 8.08 -2.39 -0.02 1.25 16 7 C -0.16 -4.77 9.49 71.98 0.68 -4.09 16 8 N -0.74 -31.22 3.65 -322.93 -1.18 -32.40 16 9 C -0.21 -11.65 10.41 84.03 0.87 -10.77 16 10 H 0.05 3.04 8.06 -2.91 -0.02 3.02 16 11 C -0.06 -3.48 5.50 84.86 0.47 -3.02 16 12 N -0.98 -64.63 13.97 21.65 0.30 -64.33 16 13 Si 0.94 44.79 25.12 68.60 1.72 46.51 16 14 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 15 H -0.32 -16.56 7.11 99.48 0.71 -15.85 16 16 H -0.23 -8.60 4.59 99.48 0.46 -8.14 16 17 N -0.70 -22.12 3.80 -442.54 -1.68 -23.80 16 18 C 0.53 18.91 7.79 87.66 0.68 19.59 16 19 O -0.58 -23.09 15.64 -3.02 -0.05 -23.14 16 20 C -0.14 -4.89 5.24 29.85 0.16 -4.74 16 21 C 0.00 -0.11 5.13 29.85 0.15 0.04 16 22 C 0.25 8.99 7.49 88.40 0.66 9.65 16 23 N -0.51 -21.46 11.34 -296.27 -3.36 -24.82 16 24 C -0.02 -0.72 7.24 39.32 0.28 -0.43 16 25 C -0.09 -2.53 10.10 22.46 0.23 -2.30 16 26 C -0.11 -1.93 10.02 22.26 0.22 -1.71 16 27 C -0.08 -1.17 10.03 22.31 0.22 -0.95 16 28 C -0.10 -1.93 10.06 22.29 0.22 -1.70 16 29 C -0.02 -0.59 7.43 22.88 0.17 -0.42 16 30 O -0.21 -7.01 10.77 -10.02 -0.11 -7.12 16 31 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 34 H 0.08 1.72 8.14 -2.38 -0.02 1.70 16 35 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.36 14.09 3.78 -92.71 -0.35 13.74 16 40 H 0.25 16.13 8.31 -92.71 -0.77 15.36 16 41 H 0.40 12.13 5.10 -92.70 -0.47 11.65 16 42 H 0.07 3.12 4.99 -2.39 -0.01 3.10 16 43 H 0.12 3.33 8.14 -2.39 -0.02 3.31 16 44 H 0.10 3.76 8.10 -2.39 -0.02 3.74 16 45 H 0.13 3.50 8.10 -2.39 -0.02 3.48 16 46 H 0.13 3.67 8.06 -2.91 -0.02 3.65 16 47 H 0.17 1.78 8.06 -2.91 -0.02 1.75 16 48 H 0.19 0.98 8.06 -2.91 -0.02 0.95 16 49 H 0.16 2.23 8.06 -2.91 -0.02 2.21 16 Total: -1.00 -83.28 396.00 1.64 -81.64 By element: Atomic # 1 Polarization: 43.90 SS G_CDS: -0.10 Total: 43.79 kcal Atomic # 6 Polarization: -2.43 SS G_CDS: 6.10 Total: 3.67 kcal Atomic # 7 Polarization: -139.44 SS G_CDS: -5.92 Total: -145.35 kcal Atomic # 8 Polarization: -30.10 SS G_CDS: -0.16 Total: -30.26 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 1.72 Total: 46.51 kcal Total: -83.28 1.64 -81.64 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146259033.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.090 kcal (2) G-P(sol) polarization free energy of solvation -83.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds