Wall clock time and date at job start Wed Apr 1 2020 04:16:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35772 * 117.00539 * 2 1 4 4 C 1.38081 * 120.19690 * 359.97438 * 3 2 1 5 5 C 1.38748 * 120.40446 * 179.97438 * 4 3 2 6 6 C 1.37775 * 120.72052 * 359.97438 * 5 4 3 7 7 C 1.39162 * 120.07593 * 359.97438 * 6 5 4 8 8 N 1.37534 * 133.05776 * 180.02562 * 7 6 5 9 9 H 0.96999 * 125.62361 * 359.97438 * 8 7 6 10 10 C 1.38288 * 108.74397 * 179.97438 * 8 7 6 11 11 C 1.46917 * 125.45076 * 179.97438 * 10 8 7 12 12 O 1.21676 * 120.00048 * 180.02562 * 11 10 8 13 13 N 1.34777 * 120.00436 * 0.03404 * 11 10 8 14 14 C 1.46495 * 120.00230 * 180.02562 * 13 11 10 15 15 H 1.09004 * 109.47062 * 324.99175 * 14 13 11 16 16 C 1.52999 * 109.47657 * 84.99077 * 14 13 11 17 17 C 1.53002 * 109.47317 * 204.99663 * 14 13 11 18 18 C 1.53003 * 109.47269 * 64.99221 * 17 14 13 19 19 H 1.09000 * 109.46953 * 305.00936 * 18 17 14 20 20 C 1.52996 * 109.47332 * 185.00423 * 18 17 14 21 21 N 1.46505 * 109.46807 * 65.00478 * 18 17 14 22 22 C 1.36931 * 119.99788 * 205.00000 * 21 18 17 23 23 H 1.08002 * 120.00438 * 0.02562 * 22 21 18 24 24 C 1.38817 * 119.99680 * 179.72358 * 22 21 18 25 25 N 1.31617 * 119.99873 * 180.27450 * 24 22 21 26 26 Si 1.86800 * 120.00209 * 0.27770 * 24 22 21 27 27 H 1.48498 * 109.47118 * 89.99559 * 26 24 22 28 28 H 1.48499 * 109.47134 * 210.00079 * 26 24 22 29 29 H 1.48507 * 109.46904 * 329.99901 * 26 24 22 30 30 C 1.35939 * 109.09161 * 0.26860 * 10 8 7 31 31 C 1.40552 * 120.20878 * 179.97438 * 3 2 1 32 32 H 1.09004 * 109.47252 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47342 * 300.00425 * 1 2 3 34 34 H 1.09001 * 109.47061 * 60.00009 * 1 2 3 35 35 H 1.08002 * 119.80340 * 359.96179 * 4 3 2 36 36 H 1.07993 * 119.64385 * 180.02562 * 5 4 3 37 37 H 1.08000 * 119.96020 * 180.02562 * 6 5 4 38 38 H 0.97000 * 119.99724 * 359.97438 * 13 11 10 39 39 H 1.09001 * 109.47265 * 179.97438 * 16 14 13 40 40 H 1.08991 * 109.47415 * 300.00577 * 16 14 13 41 41 H 1.09005 * 109.46583 * 60.00443 * 16 14 13 42 42 H 1.09000 * 109.46766 * 304.99737 * 17 14 13 43 43 H 1.08992 * 109.47398 * 184.99831 * 17 14 13 44 44 H 1.08998 * 109.47019 * 59.99816 * 20 18 17 45 45 H 1.08998 * 109.47099 * 180.02562 * 20 18 17 46 46 H 1.09002 * 109.46807 * 300.00318 * 20 18 17 47 47 H 0.97000 * 119.99792 * 24.99795 * 21 18 17 48 48 H 0.97000 * 120.00553 * 180.02562 * 25 24 22 49 49 H 1.08004 * 126.12135 * 179.73544 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0454 1.2097 0.0000 4 6 1.2975 2.3704 -0.0005 5 6 1.9230 3.6088 0.0000 6 6 3.2976 3.7031 0.0016 7 6 4.0757 2.5494 0.0032 8 7 5.4339 2.3328 0.0055 9 1 6.1160 3.0225 0.0059 10 6 5.6665 0.9696 0.0069 11 6 6.9896 0.3310 0.0089 12 8 7.0795 -0.8824 0.0095 13 7 8.1039 1.0891 0.0101 14 6 9.4232 0.4523 0.0115 15 1 9.3839 -0.4637 0.6010 16 6 9.8294 0.1171 -1.4250 17 6 10.4503 1.4079 0.6221 18 6 10.1135 1.6448 2.0957 19 1 9.0860 1.9984 2.1813 20 6 11.0641 2.6951 2.6737 21 7 10.2617 0.3906 2.8382 22 6 9.5616 0.1952 3.9987 23 1 8.8998 0.9654 4.3664 24 6 9.6977 -0.9955 4.6992 25 7 9.0207 -1.1856 5.8118 26 14 10.8418 -2.3281 4.0629 27 1 12.1993 -2.1275 4.6304 28 1 10.3263 -3.6595 4.4711 29 1 10.9092 -2.2564 2.5811 30 6 4.4750 0.3152 -0.0004 31 6 3.4488 1.2882 0.0005 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3634 0.5139 0.8899 34 1 -0.3633 0.5138 -0.8900 35 1 0.2190 2.3140 -0.0016 36 1 1.3261 4.5088 0.0000 37 1 3.7716 4.6735 0.0024 38 1 8.0324 2.0565 0.0093 39 1 10.8112 -0.3563 -1.4240 40 1 9.0978 -0.5636 -1.8601 41 1 9.8688 1.0332 -2.0145 42 1 10.4265 2.3571 0.0869 43 1 11.4455 0.9708 0.5426 44 1 10.9538 3.6282 2.1212 45 1 10.8244 2.8635 3.7236 46 1 12.0916 2.3414 2.5881 47 1 10.8558 -0.3013 2.5077 48 1 9.1160 -2.0174 6.3015 49 1 4.3370 -0.7559 -0.0053 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001146314431.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:16 Heat of formation + Delta-G solvation = -5.726705 kcal Electronic energy + Delta-G solvation = -30262.946609 eV Core-core repulsion = 26191.162979 eV Total energy + Delta-G solvation = -4071.783630 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.70521 -39.72612 -38.96047 -37.01326 -36.09114 -34.65267 -32.27101 -31.89747 -31.05947 -29.47115 -29.17608 -28.84559 -27.39179 -26.46215 -24.16653 -23.26998 -22.11315 -21.69470 -20.87532 -20.10914 -19.87807 -18.92537 -17.89376 -17.47708 -16.44910 -15.98036 -15.95798 -15.81495 -15.46097 -15.14422 -14.77514 -14.45388 -14.25599 -13.87682 -13.81598 -13.56657 -13.38084 -13.07191 -12.98999 -12.66765 -12.59738 -12.41842 -12.18030 -12.07344 -12.00404 -11.76150 -11.69387 -11.27733 -11.23097 -11.04525 -10.92397 -10.68557 -10.52244 -10.28853 -9.97119 -9.90933 -9.57880 -9.53480 -8.92290 -8.88580 -8.43096 -7.55645 -7.22357 -5.70924 -3.06356 0.76076 1.42046 2.12359 2.74968 3.11680 3.23491 3.43194 3.45621 3.51355 3.51587 3.71562 4.57023 4.65358 4.71646 4.78395 4.88870 4.93492 4.94771 5.00350 5.15773 5.20190 5.24069 5.26134 5.29210 5.44010 5.48999 5.58130 5.63789 5.72163 5.77637 5.83228 5.94454 5.96126 6.08366 6.14300 6.20063 6.26280 6.30496 6.38938 6.39927 6.48674 6.50538 6.62969 6.73721 6.78337 6.95849 7.24886 7.26859 7.62601 8.03178 8.33493 8.47564 9.25688 9.98516 10.17200 11.47605 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011342 B = 0.002925 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2468.030591 B = 9571.089947 C =10332.968329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.309 6.309 3 C 0.190 3.810 4 C -0.253 4.253 5 C -0.049 4.049 6 C -0.173 4.173 7 C 0.150 3.850 8 N -0.575 5.575 9 H 0.419 0.581 10 C 0.014 3.986 11 C 0.586 3.414 12 O -0.515 6.515 13 N -0.714 5.714 14 C 0.143 3.857 15 H 0.103 0.897 16 C -0.162 4.162 17 C -0.135 4.135 18 C 0.177 3.823 19 H 0.052 0.948 20 C -0.166 4.166 21 N -0.745 5.745 22 C -0.240 4.240 23 H 0.087 0.913 24 C 0.006 3.994 25 N -0.934 5.934 26 Si 0.883 3.117 27 H -0.286 1.286 28 H -0.291 1.291 29 H -0.276 1.276 30 C -0.086 4.086 31 C -0.142 4.142 32 H 0.100 0.900 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.128 0.872 36 H 0.128 0.872 37 H 0.123 0.877 38 H 0.390 0.610 39 H 0.065 0.935 40 H 0.059 0.941 41 H 0.052 0.948 42 H 0.066 0.934 43 H 0.076 0.924 44 H 0.037 0.963 45 H 0.057 0.943 46 H 0.045 0.955 47 H 0.360 0.640 48 H 0.259 0.741 49 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.333 11.624 -17.766 24.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.221 6.221 3 C 0.143 3.857 4 C -0.274 4.274 5 C -0.069 4.069 6 C -0.194 4.194 7 C 0.038 3.962 8 N -0.180 5.180 9 H 0.257 0.743 10 C -0.094 4.094 11 C 0.372 3.628 12 O -0.389 6.389 13 N -0.364 5.364 14 C 0.039 3.961 15 H 0.121 0.879 16 C -0.221 4.221 17 C -0.174 4.174 18 C 0.067 3.933 19 H 0.070 0.930 20 C -0.226 4.226 21 N -0.388 5.388 22 C -0.370 4.370 23 H 0.105 0.895 24 C -0.189 4.189 25 N -0.582 5.582 26 Si 0.714 3.286 27 H -0.213 1.213 28 H -0.218 1.218 29 H -0.202 1.202 30 C -0.112 4.112 31 C -0.147 4.147 32 H 0.118 0.882 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.146 0.854 36 H 0.146 0.854 37 H 0.141 0.859 38 H 0.223 0.777 39 H 0.084 0.916 40 H 0.078 0.922 41 H 0.071 0.929 42 H 0.084 0.916 43 H 0.095 0.905 44 H 0.056 0.944 45 H 0.076 0.924 46 H 0.064 0.936 47 H 0.193 0.807 48 H 0.069 0.931 49 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -12.146 10.561 -17.560 23.820 hybrid contribution 0.850 0.032 -0.155 0.864 sum -11.296 10.592 -17.714 23.529 Atomic orbital electron populations 1.23091 0.78247 1.04048 1.01416 1.86075 1.21416 1.26987 1.87625 1.18483 0.89779 0.84372 0.93080 1.20847 0.99733 0.91850 1.14926 1.20539 0.93200 0.96909 0.96214 1.19900 0.93149 0.95413 1.10923 1.17986 0.82793 0.94544 1.00853 1.41931 1.05571 1.06466 1.64018 0.74281 1.20230 0.95176 0.82104 1.11937 1.17044 0.82223 0.86754 0.76809 1.90874 1.86116 1.12789 1.49138 1.45831 1.06052 1.09194 1.75370 1.21065 0.80628 0.98242 0.96121 0.87860 1.22198 1.01821 1.01411 0.96624 1.22236 0.98803 0.98818 0.97531 1.20187 0.97246 0.87555 0.88293 0.92997 1.22425 1.00413 0.98026 1.01711 1.42761 1.53708 1.15117 1.27205 1.18985 1.19303 1.01350 0.97349 0.89525 1.24644 0.99634 0.97599 0.97059 1.69694 1.44925 1.26199 1.17336 0.86567 0.80966 0.82668 0.78443 1.21310 1.21775 1.20222 1.20817 0.88699 0.99689 1.02039 1.17343 0.90511 0.93375 1.13476 0.88173 0.92445 0.92575 0.85402 0.85410 0.85886 0.77708 0.91649 0.92228 0.92912 0.91580 0.90498 0.94434 0.92373 0.93558 0.80722 0.93135 0.82502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.31 -3.76 10.50 -19.03 -0.20 -3.96 16 3 C 0.19 2.41 6.73 -38.77 -0.26 2.14 16 4 C -0.25 -2.55 9.03 -39.45 -0.36 -2.90 16 5 C -0.05 -0.45 10.01 -39.56 -0.40 -0.84 16 6 C -0.17 -1.72 10.06 -39.41 -0.40 -2.12 16 7 C 0.15 1.86 7.25 -83.98 -0.61 1.25 16 8 N -0.58 -6.70 6.08 -7.35 -0.04 -6.74 16 9 H 0.42 3.48 8.12 -40.82 -0.33 3.15 16 10 C 0.01 0.21 6.97 -82.26 -0.57 -0.37 16 11 C 0.59 9.92 7.76 -12.75 -0.10 9.82 16 12 O -0.51 -10.84 16.50 5.21 0.09 -10.75 16 13 N -0.71 -9.99 4.44 -55.04 -0.24 -10.24 16 14 C 0.14 2.16 2.52 -67.93 -0.17 1.99 16 15 H 0.10 2.04 7.05 -51.93 -0.37 1.67 16 16 C -0.16 -2.04 9.48 37.16 0.35 -1.69 16 17 C -0.14 -1.86 4.29 -26.73 -0.11 -1.98 16 18 C 0.18 3.15 2.84 -67.93 -0.19 2.96 16 19 H 0.05 0.97 7.56 -51.93 -0.39 0.58 16 20 C -0.17 -2.71 9.49 37.16 0.35 -2.36 16 21 N -0.74 -17.20 4.30 -53.42 -0.23 -17.43 16 22 C -0.24 -6.80 10.41 -15.06 -0.16 -6.95 16 23 H 0.09 2.65 8.06 -52.49 -0.42 2.23 16 24 C 0.01 0.19 5.50 -17.43 -0.10 0.10 16 25 N -0.93 -30.07 13.97 55.49 0.78 -29.30 16 26 Si 0.88 22.86 27.74 -169.99 -4.72 18.14 16 27 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 28 H -0.29 -7.74 7.11 56.52 0.40 -7.33 16 29 H -0.28 -6.74 6.51 56.52 0.37 -6.37 16 30 C -0.09 -1.35 10.52 -39.20 -0.41 -1.76 16 31 C -0.14 -2.02 6.11 -106.83 -0.65 -2.67 16 32 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.36 7.66 -51.93 -0.40 -0.03 16 34 H 0.06 0.33 7.66 -51.93 -0.40 -0.07 16 35 H 0.13 0.96 6.28 -52.49 -0.33 0.63 16 36 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 37 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 38 H 0.39 4.14 7.66 -40.82 -0.31 3.83 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 46 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.36 8.29 5.66 -40.82 -0.23 8.06 16 48 H 0.26 7.98 8.31 -40.82 -0.34 7.64 16 49 H 0.16 2.49 8.06 -52.48 -0.42 2.07 16 LS Contribution 404.50 15.07 6.10 6.10 Total: -1.00 -36.72 404.50 -8.69 -45.41 By element: Atomic # 1 Polarization: 20.40 SS G_CDS: -7.42 Total: 12.98 kcal Atomic # 6 Polarization: -1.41 SS G_CDS: -2.79 Total: -4.20 kcal Atomic # 7 Polarization: -63.96 SS G_CDS: 0.26 Total: -63.71 kcal Atomic # 8 Polarization: -14.60 SS G_CDS: -0.11 Total: -14.71 kcal Atomic # 14 Polarization: 22.86 SS G_CDS: -4.72 Total: 18.14 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -36.72 -8.69 -45.41 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146314431.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.679 kcal (2) G-P(sol) polarization free energy of solvation -36.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds