Wall clock time and date at job start Wed Apr 1 2020 04:16:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35772 * 117.00539 * 2 1 4 4 C 1.38081 * 120.19690 * 359.97438 * 3 2 1 5 5 C 1.38748 * 120.40446 * 179.97438 * 4 3 2 6 6 C 1.37775 * 120.72052 * 359.97438 * 5 4 3 7 7 C 1.39162 * 120.07593 * 359.97438 * 6 5 4 8 8 N 1.37534 * 133.05776 * 180.02562 * 7 6 5 9 9 H 0.96999 * 125.62361 * 359.97438 * 8 7 6 10 10 C 1.38288 * 108.74397 * 179.97438 * 8 7 6 11 11 C 1.46917 * 125.45076 * 179.97438 * 10 8 7 12 12 O 1.21676 * 120.00048 * 180.02562 * 11 10 8 13 13 N 1.34777 * 120.00436 * 0.03404 * 11 10 8 14 14 C 1.46495 * 120.00230 * 180.02562 * 13 11 10 15 15 H 1.09004 * 109.47062 * 324.99175 * 14 13 11 16 16 C 1.52999 * 109.47657 * 84.99077 * 14 13 11 17 17 C 1.53002 * 109.47317 * 204.99663 * 14 13 11 18 18 C 1.53003 * 109.47269 * 64.99221 * 17 14 13 19 19 H 1.09000 * 109.46953 * 305.00936 * 18 17 14 20 20 C 1.52996 * 109.47332 * 185.00423 * 18 17 14 21 21 N 1.46505 * 109.46807 * 65.00478 * 18 17 14 22 22 C 1.36931 * 119.99788 * 205.00000 * 21 18 17 23 23 H 1.08002 * 120.00438 * 0.02562 * 22 21 18 24 24 C 1.38817 * 119.99680 * 179.72358 * 22 21 18 25 25 N 1.31617 * 119.99873 * 180.27450 * 24 22 21 26 26 Si 1.86800 * 120.00209 * 0.27770 * 24 22 21 27 27 H 1.48498 * 109.47118 * 89.99559 * 26 24 22 28 28 H 1.48499 * 109.47134 * 210.00079 * 26 24 22 29 29 H 1.48507 * 109.46904 * 329.99901 * 26 24 22 30 30 C 1.35939 * 109.09161 * 0.26860 * 10 8 7 31 31 C 1.40552 * 120.20878 * 179.97438 * 3 2 1 32 32 H 1.09004 * 109.47252 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47342 * 300.00425 * 1 2 3 34 34 H 1.09001 * 109.47061 * 60.00009 * 1 2 3 35 35 H 1.08002 * 119.80340 * 359.96179 * 4 3 2 36 36 H 1.07993 * 119.64385 * 180.02562 * 5 4 3 37 37 H 1.08000 * 119.96020 * 180.02562 * 6 5 4 38 38 H 0.97000 * 119.99724 * 359.97438 * 13 11 10 39 39 H 1.09001 * 109.47265 * 179.97438 * 16 14 13 40 40 H 1.08991 * 109.47415 * 300.00577 * 16 14 13 41 41 H 1.09005 * 109.46583 * 60.00443 * 16 14 13 42 42 H 1.09000 * 109.46766 * 304.99737 * 17 14 13 43 43 H 1.08992 * 109.47398 * 184.99831 * 17 14 13 44 44 H 1.08998 * 109.47019 * 59.99816 * 20 18 17 45 45 H 1.08998 * 109.47099 * 180.02562 * 20 18 17 46 46 H 1.09002 * 109.46807 * 300.00318 * 20 18 17 47 47 H 0.97000 * 119.99792 * 24.99795 * 21 18 17 48 48 H 0.97000 * 120.00553 * 180.02562 * 25 24 22 49 49 H 1.08004 * 126.12135 * 179.73544 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0454 1.2097 0.0000 4 6 1.2975 2.3704 -0.0005 5 6 1.9230 3.6088 0.0000 6 6 3.2976 3.7031 0.0016 7 6 4.0757 2.5494 0.0032 8 7 5.4339 2.3328 0.0055 9 1 6.1160 3.0225 0.0059 10 6 5.6665 0.9696 0.0069 11 6 6.9896 0.3310 0.0089 12 8 7.0795 -0.8824 0.0095 13 7 8.1039 1.0891 0.0101 14 6 9.4232 0.4523 0.0115 15 1 9.3839 -0.4637 0.6010 16 6 9.8294 0.1171 -1.4250 17 6 10.4503 1.4079 0.6221 18 6 10.1135 1.6448 2.0957 19 1 9.0860 1.9984 2.1813 20 6 11.0641 2.6951 2.6737 21 7 10.2617 0.3906 2.8382 22 6 9.5616 0.1952 3.9987 23 1 8.8998 0.9654 4.3664 24 6 9.6977 -0.9955 4.6992 25 7 9.0207 -1.1856 5.8118 26 14 10.8418 -2.3281 4.0629 27 1 12.1993 -2.1275 4.6304 28 1 10.3263 -3.6595 4.4711 29 1 10.9092 -2.2564 2.5811 30 6 4.4750 0.3152 -0.0004 31 6 3.4488 1.2882 0.0005 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3634 0.5139 0.8899 34 1 -0.3633 0.5138 -0.8900 35 1 0.2190 2.3140 -0.0016 36 1 1.3261 4.5088 0.0000 37 1 3.7716 4.6735 0.0024 38 1 8.0324 2.0565 0.0093 39 1 10.8112 -0.3563 -1.4240 40 1 9.0978 -0.5636 -1.8601 41 1 9.8688 1.0332 -2.0145 42 1 10.4265 2.3571 0.0869 43 1 11.4455 0.9708 0.5426 44 1 10.9538 3.6282 2.1212 45 1 10.8244 2.8635 3.7236 46 1 12.0916 2.3414 2.5881 47 1 10.8558 -0.3013 2.5077 48 1 9.1160 -2.0174 6.3015 49 1 4.3370 -0.7559 -0.0053 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001146314431.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:15 Heat of formation + Delta-G solvation = -32.419647 kcal Electronic energy + Delta-G solvation = -30264.104102 eV Core-core repulsion = 26191.162979 eV Total energy + Delta-G solvation = -4072.941123 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.68977 -40.86187 -39.93367 -38.45415 -36.95928 -36.23122 -34.14379 -32.94857 -32.40373 -31.06705 -30.28297 -29.72178 -28.09224 -27.63417 -25.46573 -25.09583 -22.98520 -22.70324 -22.10306 -21.39267 -21.28128 -19.98010 -19.62111 -18.73144 -17.53772 -16.96173 -16.86287 -16.78359 -16.62722 -16.27133 -16.26233 -15.93375 -15.45151 -15.32039 -15.02454 -14.75979 -14.59758 -14.39923 -14.27634 -14.03901 -13.92654 -13.46724 -13.32094 -13.25566 -13.02379 -12.84483 -12.82554 -12.66345 -12.44120 -12.41312 -12.02427 -11.99087 -11.89372 -11.81668 -11.71422 -11.48463 -11.29425 -10.97620 -10.57187 -10.18126 -9.35406 -9.28233 -8.46701 -8.02435 -5.32761 -0.23622 0.56581 1.04800 1.32476 1.38217 1.43538 1.78527 2.05669 2.28362 2.38925 2.47328 2.84107 3.30642 3.60833 3.63656 3.80298 3.85912 4.02590 4.03638 4.07026 4.23407 4.30836 4.37354 4.43189 4.47747 4.48528 4.57631 4.62511 4.72889 4.74291 4.77162 4.79832 4.86458 4.91948 4.98091 5.06365 5.16319 5.29675 5.31644 5.33236 5.39020 5.49848 5.51523 5.56850 5.59528 5.78220 5.83983 6.22370 6.36280 6.47709 6.53235 7.09316 7.10613 7.88940 8.04321 9.19884 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011342 B = 0.002925 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2468.030591 B = 9571.089947 C =10332.968329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.339 6.339 3 C 0.166 3.834 4 C -0.247 4.247 5 C -0.040 4.040 6 C -0.175 4.175 7 C 0.146 3.854 8 N -0.559 5.559 9 H 0.435 0.565 10 C 0.002 3.998 11 C 0.581 3.419 12 O -0.569 6.569 13 N -0.698 5.698 14 C 0.140 3.860 15 H 0.052 0.948 16 C -0.153 4.153 17 C -0.121 4.121 18 C 0.166 3.834 19 H 0.040 0.960 20 C -0.157 4.157 21 N -0.748 5.748 22 C -0.214 4.214 23 H 0.052 0.948 24 C -0.069 4.069 25 N -0.988 5.988 26 Si 0.949 3.051 27 H -0.273 1.273 28 H -0.304 1.304 29 H -0.255 1.255 30 C -0.111 4.111 31 C -0.176 4.176 32 H 0.112 0.888 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.156 0.844 36 H 0.168 0.832 37 H 0.155 0.845 38 H 0.409 0.591 39 H 0.077 0.923 40 H 0.037 0.963 41 H 0.084 0.916 42 H 0.114 0.886 43 H 0.090 0.910 44 H 0.080 0.920 45 H 0.024 0.976 46 H 0.052 0.948 47 H 0.362 0.638 48 H 0.254 0.746 49 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.934 15.174 -20.339 28.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.252 6.252 3 C 0.119 3.881 4 C -0.267 4.267 5 C -0.060 4.060 6 C -0.196 4.196 7 C 0.034 3.966 8 N -0.166 5.166 9 H 0.276 0.724 10 C -0.107 4.107 11 C 0.368 3.632 12 O -0.448 6.448 13 N -0.349 5.349 14 C 0.036 3.964 15 H 0.070 0.930 16 C -0.211 4.211 17 C -0.159 4.159 18 C 0.058 3.942 19 H 0.058 0.942 20 C -0.216 4.216 21 N -0.392 5.392 22 C -0.346 4.346 23 H 0.070 0.930 24 C -0.260 4.260 25 N -0.639 5.639 26 Si 0.778 3.222 27 H -0.199 1.199 28 H -0.231 1.231 29 H -0.180 1.180 30 C -0.138 4.138 31 C -0.180 4.180 32 H 0.131 0.869 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.173 0.827 36 H 0.185 0.815 37 H 0.172 0.828 38 H 0.245 0.755 39 H 0.096 0.904 40 H 0.056 0.944 41 H 0.103 0.897 42 H 0.132 0.868 43 H 0.109 0.891 44 H 0.099 0.901 45 H 0.043 0.957 46 H 0.071 0.929 47 H 0.195 0.805 48 H 0.063 0.937 49 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -11.703 14.224 -20.192 27.331 hybrid contribution 0.527 -0.917 0.624 1.227 sum -11.176 13.308 -19.568 26.171 Atomic orbital electron populations 1.23387 0.75990 1.05473 1.02750 1.86036 1.23900 1.27489 1.87792 1.18763 0.89586 0.85498 0.94271 1.21258 1.01088 0.91277 1.13067 1.21085 0.93239 0.97880 0.93773 1.20335 0.93517 0.95670 1.10042 1.18340 0.82788 0.94809 1.00643 1.41733 1.06059 1.05309 1.63501 0.72396 1.19871 0.93918 0.83691 1.13254 1.17350 0.83437 0.86311 0.76094 1.90833 1.86966 1.15134 1.51908 1.45700 1.05205 1.10036 1.73911 1.21034 0.81270 0.96799 0.97304 0.93017 1.22106 1.01665 1.02547 0.94750 1.22167 0.98596 1.00836 0.94299 1.20526 0.97311 0.85697 0.90648 0.94201 1.22281 0.99955 0.99305 1.00104 1.42816 1.53044 1.17337 1.26023 1.18943 1.17545 0.99779 0.98302 0.93027 1.25449 1.02287 1.00467 0.97755 1.69880 1.47784 1.26829 1.19419 0.85481 0.79048 0.78707 0.79012 1.19946 1.23146 1.17962 1.20833 0.90283 0.99350 1.03369 1.17648 0.91468 0.93807 1.15108 0.86941 0.91339 0.90800 0.82677 0.81461 0.82766 0.75469 0.90373 0.94390 0.89733 0.86782 0.89140 0.90115 0.95664 0.92872 0.80466 0.93706 0.84675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.81 113.37 1.11 1.36 16 2 O -0.34 -8.58 10.50 -91.00 -0.96 -9.53 16 3 C 0.17 4.22 6.73 22.80 0.15 4.38 16 4 C -0.25 -4.39 9.03 22.35 0.20 -4.19 16 5 C -0.04 -0.58 10.01 22.28 0.22 -0.36 16 6 C -0.17 -2.94 10.06 22.38 0.23 -2.72 16 7 C 0.15 3.49 7.25 39.11 0.28 3.77 16 8 N -0.56 -12.77 6.08 -177.18 -1.08 -13.85 16 9 H 0.43 6.46 8.12 -92.71 -0.75 5.70 16 10 C 0.00 0.06 6.97 39.86 0.28 0.34 16 11 C 0.58 20.68 7.76 86.52 0.67 21.36 16 12 O -0.57 -25.91 16.50 -4.27 -0.07 -25.98 16 13 N -0.70 -19.14 4.44 -446.27 -1.98 -21.13 16 14 C 0.14 4.04 2.52 44.99 0.11 4.15 16 15 H 0.05 2.07 7.05 -2.38 -0.02 2.06 16 16 C -0.15 -3.49 9.48 71.98 0.68 -2.81 16 17 C -0.12 -2.88 4.29 30.60 0.13 -2.75 16 18 C 0.17 5.61 2.84 44.99 0.13 5.73 16 19 H 0.04 1.45 7.56 -2.39 -0.02 1.43 16 20 C -0.16 -4.69 9.49 71.98 0.68 -4.01 16 21 N -0.75 -34.43 4.30 -322.93 -1.39 -35.82 16 22 C -0.21 -12.52 10.41 84.04 0.87 -11.64 16 23 H 0.05 3.32 8.06 -2.91 -0.02 3.30 16 24 C -0.07 -4.25 5.50 84.86 0.47 -3.78 16 25 N -0.99 -66.58 13.97 21.65 0.30 -66.27 16 26 Si 0.95 48.47 27.74 68.60 1.90 50.38 16 27 H -0.27 -13.29 7.11 99.48 0.71 -12.58 16 28 H -0.30 -16.07 7.11 99.48 0.71 -15.37 16 29 H -0.25 -11.93 6.51 99.48 0.65 -11.29 16 30 C -0.11 -3.82 10.52 22.52 0.24 -3.58 16 31 C -0.18 -5.20 6.11 -21.30 -0.13 -5.33 16 32 H 0.11 1.21 8.14 -2.38 -0.02 1.19 16 33 H 0.07 0.78 7.66 -2.39 -0.02 0.76 16 34 H 0.07 0.74 7.66 -2.39 -0.02 0.72 16 35 H 0.16 1.80 6.28 -2.91 -0.02 1.78 16 36 H 0.17 1.12 8.06 -2.91 -0.02 1.10 16 37 H 0.15 1.61 8.06 -2.91 -0.02 1.58 16 38 H 0.41 7.84 7.66 -92.71 -0.71 7.13 16 39 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 42 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 43 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 44 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 45 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 46 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 47 H 0.36 16.33 5.66 -92.71 -0.52 15.80 16 48 H 0.25 16.45 8.31 -92.71 -0.77 15.68 16 49 H 0.14 4.99 8.06 -2.91 -0.02 4.97 16 Total: -1.00 -88.54 404.50 2.01 -86.53 By element: Atomic # 1 Polarization: 36.82 SS G_CDS: -1.05 Total: 35.77 kcal Atomic # 6 Polarization: -6.42 SS G_CDS: 6.33 Total: -0.09 kcal Atomic # 7 Polarization: -132.92 SS G_CDS: -4.15 Total: -137.07 kcal Atomic # 8 Polarization: -34.49 SS G_CDS: -1.03 Total: -35.52 kcal Atomic # 14 Polarization: 48.47 SS G_CDS: 1.90 Total: 50.38 kcal Total: -88.54 2.01 -86.53 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146314431.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.113 kcal (2) G-P(sol) polarization free energy of solvation -88.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds