Wall clock time and date at job start Wed Apr 1 2020 04:11:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.52999 * 109.46626 * 119.99699 * 2 1 3 5 5 C 1.53009 * 109.47020 * 185.00095 * 4 2 1 6 6 C 1.52989 * 109.47113 * 180.02562 * 5 4 2 7 7 C 1.53009 * 109.47113 * 180.02562 * 6 5 4 8 8 N 1.46497 * 109.47006 * 179.97438 * 7 6 5 9 9 C 1.36938 * 119.99781 * 179.97438 * 8 7 6 10 10 H 1.08002 * 119.99890 * 0.02562 * 9 8 7 11 11 C 1.38815 * 120.00176 * 179.97438 * 9 8 7 12 12 N 1.31621 * 119.99757 * 179.97438 * 11 9 8 13 13 Si 1.86799 * 119.99845 * 0.02562 * 11 9 8 14 14 H 1.48498 * 109.47286 * 89.99782 * 13 11 9 15 15 H 1.48500 * 109.46973 * 209.99881 * 13 11 9 16 16 H 1.48496 * 109.47127 * 329.99652 * 13 11 9 17 17 N 1.46492 * 109.47363 * 239.99860 * 2 1 3 18 18 C 1.34781 * 119.99920 * 84.99933 * 17 2 1 19 19 O 1.21544 * 119.99873 * 0.02562 * 18 17 2 20 20 C 1.47859 * 119.99845 * 180.02562 * 18 17 2 21 21 C 1.39612 * 119.97225 * 0.02562 * 20 18 17 22 22 C 1.38094 * 119.68651 * 179.97438 * 21 20 18 23 23 C 1.37852 * 120.10795 * 359.97438 * 22 21 20 24 24 C 1.39030 * 121.04308 * 0.02562 * 23 22 21 25 25 C 1.39121 * 119.08878 * 359.74528 * 24 23 22 26 26 N 1.39584 * 110.20918 * 179.97438 * 24 23 22 27 27 C 1.34356 * 112.24845 * 0.02562 * 26 24 23 28 28 O 1.21285 * 126.42088 * 180.02562 * 27 26 24 29 29 C 1.51184 * 132.65141 * 179.97438 * 23 22 21 30 30 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46801 * 300.00112 * 1 2 3 32 32 H 1.09001 * 109.46998 * 59.99708 * 1 2 3 33 33 H 1.08993 * 109.47768 * 305.00075 * 4 2 1 34 34 H 1.09005 * 109.47260 * 65.00844 * 4 2 1 35 35 H 1.09001 * 109.46642 * 300.00256 * 5 4 2 36 36 H 1.08999 * 109.47112 * 60.00003 * 5 4 2 37 37 H 1.09001 * 109.47240 * 299.99479 * 6 5 4 38 38 H 1.08999 * 109.47464 * 59.99808 * 6 5 4 39 39 H 1.09001 * 109.46642 * 299.99845 * 7 6 5 40 40 H 1.08997 * 109.46604 * 59.99609 * 7 6 5 41 41 H 0.96997 * 120.00390 * 0.02562 * 8 7 6 42 42 H 0.97006 * 119.99215 * 180.02562 * 12 11 9 43 43 H 0.96998 * 120.00176 * 265.00572 * 17 2 1 44 44 H 1.07996 * 120.16061 * 359.97438 * 21 20 18 45 45 H 1.07999 * 119.94329 * 179.97438 * 22 21 20 46 46 H 1.08002 * 119.99419 * 180.26594 * 25 24 23 47 47 H 0.96997 * 123.87430 * 179.97438 * 26 24 23 48 48 H 1.09004 * 110.50840 * 298.67157 * 29 23 22 49 49 H 1.08998 * 110.50977 * 61.37090 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5648 -0.6133 1.3139 6 6 4.0748 -1.3350 2.5627 7 6 5.5996 -1.2265 2.6276 8 7 6.0878 -1.9170 3.8238 9 6 7.4299 -1.9534 4.0936 10 1 8.1283 -1.4726 3.4247 11 6 7.8925 -2.6072 5.2273 12 7 9.1825 -2.6426 5.4863 13 14 6.6844 -3.4382 6.3847 14 1 6.4797 -4.8461 5.9592 15 1 7.2258 -3.4126 7.7672 16 1 5.3872 -2.7163 6.3477 17 7 2.0184 -0.6906 -1.1961 18 6 2.1472 -0.0182 -2.3571 19 8 1.8585 1.1612 -2.4115 20 6 2.6395 -0.7154 -3.5644 21 6 2.9704 -2.0703 -3.5013 22 6 3.4292 -2.7157 -4.6326 23 6 3.5590 -2.0246 -5.8183 24 6 3.2345 -0.6752 -5.9009 25 6 2.7673 -0.0213 -4.7654 26 7 3.4505 -0.2059 -7.1976 27 6 3.9087 -1.1671 -8.0168 28 8 4.1817 -1.0420 -9.1919 29 6 4.0222 -2.4350 -7.1977 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.6053 -0.2617 2.1370 34 1 1.7517 -1.7715 1.2056 35 1 3.9994 -1.0728 0.4261 36 1 3.8532 0.4370 1.3575 37 1 3.6402 -0.8757 3.4507 38 1 3.7864 -2.3852 2.5187 39 1 6.0345 -1.6854 1.7397 40 1 5.8875 -0.1761 2.6718 41 1 5.4606 -2.3491 4.4244 42 1 9.5058 -3.0998 6.2784 43 1 2.2491 -1.6317 -1.1525 44 1 2.8681 -2.6111 -2.5721 45 1 3.6868 -3.7636 -4.5884 46 1 2.5068 1.0258 -4.8141 47 1 3.2876 0.7091 -7.4755 48 1 5.0562 -2.7786 -7.1668 49 1 3.3730 -3.2108 -7.6035 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170953922.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:51 Heat of formation + Delta-G solvation = -40.354635 kcal Electronic energy + Delta-G solvation = -28576.332854 eV Core-core repulsion = 24503.047644 eV Total energy + Delta-G solvation = -4073.285210 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.99318 -40.36488 -38.68290 -37.14247 -36.09735 -35.48400 -33.39615 -32.90389 -31.76275 -30.72628 -30.11177 -28.69383 -27.80785 -24.46382 -23.57971 -23.28241 -22.06047 -21.75249 -21.00242 -20.87127 -20.65929 -18.85165 -17.59979 -17.46304 -17.01381 -16.65917 -16.57546 -15.59405 -15.35395 -15.26802 -14.95542 -14.64518 -14.57054 -14.29297 -14.17009 -14.05419 -13.67432 -13.60074 -13.39303 -13.08523 -13.00720 -12.75631 -12.70559 -12.47261 -11.96045 -11.72783 -11.71084 -11.49864 -11.38550 -11.20819 -10.90318 -10.88202 -10.78506 -10.45191 -10.38097 -10.25392 -10.11496 -9.59551 -9.52885 -9.32593 -8.89399 -8.66156 -7.22713 -5.76920 -3.12207 0.22379 0.64898 1.83866 2.35865 2.49139 2.83706 3.34325 3.36289 3.38753 3.44159 3.51176 3.77846 4.19344 4.27922 4.43717 4.57274 4.58683 4.61812 4.75105 4.78319 4.79534 4.86617 5.10648 5.14426 5.24899 5.26504 5.29338 5.41367 5.45865 5.51656 5.54156 5.62493 5.69585 5.71402 5.77375 5.82778 5.92393 5.98068 6.04083 6.09225 6.15346 6.17698 6.25647 6.33313 6.35536 6.76019 6.79751 7.15818 7.39568 7.86413 8.00117 8.42404 9.21863 9.94279 10.14457 11.41612 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011309 B = 0.001893 C = 0.001689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2475.253502 B =14786.349165 C =16573.424102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.141 3.859 3 H 0.091 0.909 4 C -0.128 4.128 5 C -0.115 4.115 6 C -0.130 4.130 7 C 0.156 3.844 8 N -0.758 5.758 9 C -0.244 4.244 10 H 0.089 0.911 11 C 0.002 3.998 12 N -0.935 5.935 13 Si 0.887 3.113 14 H -0.284 1.284 15 H -0.291 1.291 16 H -0.277 1.277 17 N -0.715 5.715 18 C 0.560 3.440 19 O -0.535 6.535 20 C -0.098 4.098 21 C -0.103 4.103 22 C -0.071 4.071 23 C -0.119 4.119 24 C 0.133 3.867 25 C -0.078 4.078 26 N -0.659 5.659 27 C 0.529 3.471 28 O -0.503 6.503 29 C -0.118 4.118 30 H 0.057 0.943 31 H 0.067 0.933 32 H 0.059 0.941 33 H 0.081 0.919 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.025 0.975 40 H 0.025 0.975 41 H 0.360 0.640 42 H 0.259 0.741 43 H 0.401 0.599 44 H 0.136 0.864 45 H 0.139 0.861 46 H 0.141 0.859 47 H 0.416 0.584 48 H 0.129 0.871 49 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.382 0.786 -23.508 31.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.037 3.963 3 H 0.109 0.891 4 C -0.166 4.166 5 C -0.153 4.153 6 C -0.168 4.168 7 C 0.029 3.971 8 N -0.404 5.404 9 C -0.374 4.374 10 H 0.107 0.893 11 C -0.194 4.194 12 N -0.583 5.583 13 Si 0.717 3.283 14 H -0.211 1.211 15 H -0.217 1.217 16 H -0.204 1.204 17 N -0.367 5.367 18 C 0.347 3.653 19 O -0.413 6.413 20 C -0.102 4.102 21 C -0.122 4.122 22 C -0.089 4.089 23 C -0.122 4.122 24 C 0.036 3.964 25 C -0.100 4.100 26 N -0.302 5.302 27 C 0.317 3.683 28 O -0.377 6.377 29 C -0.157 4.157 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.099 0.901 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.043 0.957 40 H 0.042 0.958 41 H 0.193 0.807 42 H 0.069 0.931 43 H 0.237 0.763 44 H 0.154 0.846 45 H 0.157 0.843 46 H 0.159 0.841 47 H 0.254 0.746 48 H 0.147 0.853 49 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -20.147 1.647 -24.253 31.573 hybrid contribution -0.668 -0.597 0.918 1.283 sum -20.816 1.050 -23.335 31.288 Atomic orbital electron populations 1.22183 0.95201 1.02167 1.02629 1.21089 0.93852 0.97839 0.83551 0.89064 1.21954 0.96874 1.00957 0.96774 1.21522 0.93935 1.01326 0.98534 1.21779 0.97311 1.00261 0.97400 1.20631 0.90754 0.95718 0.90005 1.42735 1.05245 1.66281 1.26095 1.19088 0.82275 1.29265 1.06771 0.89282 1.24700 0.95648 1.00795 0.98262 1.69712 1.11713 1.48277 1.28607 0.86509 0.80925 0.79765 0.81107 1.21098 1.21725 1.20367 1.46013 1.66961 1.14195 1.09529 1.18132 0.77655 0.86442 0.83054 1.90785 1.50081 1.15437 1.84954 1.19616 1.02839 0.94184 0.93548 1.21257 0.98855 0.93264 0.98846 1.20241 0.98149 1.00376 0.90153 1.20035 1.03152 0.93411 0.95601 1.17963 0.99614 0.93500 0.85341 1.20380 0.99630 1.00836 0.89166 1.43750 1.63478 1.14326 1.08664 1.20590 0.75336 0.86238 0.86121 1.90844 1.49298 1.83608 1.13967 1.21141 1.05614 0.97695 0.91245 0.92422 0.91399 0.92182 0.90086 0.91297 0.91913 0.91718 0.92096 0.92154 0.95734 0.95750 0.80745 0.93083 0.76332 0.84603 0.84307 0.84110 0.74598 0.85336 0.85468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.21 9.48 37.16 0.35 -0.86 16 2 C 0.14 1.15 2.57 -67.93 -0.17 0.98 16 3 H 0.09 0.92 7.58 -51.93 -0.39 0.53 16 4 C -0.13 -1.02 4.75 -26.73 -0.13 -1.15 16 5 C -0.12 -1.22 5.10 -26.73 -0.14 -1.35 16 6 C -0.13 -1.80 5.33 -26.73 -0.14 -1.94 16 7 C 0.16 2.96 6.26 -4.04 -0.03 2.94 16 8 N -0.76 -18.14 5.41 -59.91 -0.32 -18.47 16 9 C -0.24 -7.00 10.47 -15.06 -0.16 -7.16 16 10 H 0.09 2.74 8.06 -52.49 -0.42 2.31 16 11 C 0.00 0.04 5.50 -17.43 -0.10 -0.05 16 12 N -0.93 -29.54 13.97 55.49 0.78 -28.76 16 13 Si 0.89 22.06 27.74 -169.99 -4.71 17.35 16 14 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 15 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 16 H -0.28 -6.47 6.52 56.52 0.37 -6.11 16 17 N -0.71 -5.46 4.48 -54.75 -0.25 -5.70 16 18 C 0.56 5.43 7.74 -12.32 -0.10 5.33 16 19 O -0.53 -7.05 15.99 5.33 0.09 -6.96 16 20 C -0.10 -0.77 5.86 -105.05 -0.62 -1.38 16 21 C -0.10 -0.57 9.55 -39.12 -0.37 -0.95 16 22 C -0.07 -0.35 10.02 -39.78 -0.40 -0.74 16 23 C -0.12 -0.69 6.35 -104.23 -0.66 -1.35 16 24 C 0.13 0.91 7.10 -83.71 -0.59 0.32 16 25 C -0.08 -0.61 9.62 -38.86 -0.37 -0.98 16 26 N -0.66 -4.30 5.88 -9.72 -0.06 -4.35 16 27 C 0.53 4.13 8.71 -10.84 -0.09 4.03 16 28 O -0.50 -5.76 18.03 5.55 0.10 -5.66 16 29 C -0.12 -0.57 6.88 -28.47 -0.20 -0.76 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.64 7.75 -51.93 -0.40 0.24 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 39 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.36 8.32 5.53 -40.82 -0.23 8.10 16 42 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 43 H 0.40 2.15 6.62 -40.82 -0.27 1.88 16 44 H 0.14 0.46 6.39 -52.49 -0.34 0.13 16 45 H 0.14 0.36 8.06 -52.49 -0.42 -0.07 16 46 H 0.14 1.10 7.63 -52.49 -0.40 0.70 16 47 H 0.42 2.06 8.96 -40.82 -0.37 1.70 16 48 H 0.13 0.45 8.14 -51.93 -0.42 0.03 16 49 H 0.13 0.39 8.14 -51.93 -0.42 -0.04 16 LS Contribution 406.11 15.07 6.12 6.12 Total: -1.00 -36.94 406.11 -9.65 -46.59 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -7.48 Total: 4.92 kcal Atomic # 6 Polarization: -1.16 SS G_CDS: -3.91 Total: -5.07 kcal Atomic # 7 Polarization: -57.43 SS G_CDS: 0.15 Total: -57.28 kcal Atomic # 8 Polarization: -12.81 SS G_CDS: 0.19 Total: -12.62 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.71 Total: 17.35 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -36.94 -9.65 -46.59 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170953922.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.238 kcal (2) G-P(sol) polarization free energy of solvation -36.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds