Wall clock time and date at job start Wed Apr 1 2020 04:11:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.52999 * 109.46626 * 119.99699 * 2 1 3 5 5 C 1.53009 * 109.47020 * 185.00095 * 4 2 1 6 6 C 1.52989 * 109.47113 * 180.02562 * 5 4 2 7 7 C 1.53009 * 109.47113 * 180.02562 * 6 5 4 8 8 N 1.46497 * 109.47006 * 179.97438 * 7 6 5 9 9 C 1.36938 * 119.99781 * 179.97438 * 8 7 6 10 10 H 1.08002 * 119.99890 * 0.02562 * 9 8 7 11 11 C 1.38815 * 120.00176 * 179.97438 * 9 8 7 12 12 N 1.31621 * 119.99757 * 179.97438 * 11 9 8 13 13 Si 1.86799 * 119.99845 * 0.02562 * 11 9 8 14 14 H 1.48498 * 109.47286 * 89.99782 * 13 11 9 15 15 H 1.48500 * 109.46973 * 209.99881 * 13 11 9 16 16 H 1.48496 * 109.47127 * 329.99652 * 13 11 9 17 17 N 1.46492 * 109.47363 * 239.99860 * 2 1 3 18 18 C 1.34781 * 119.99920 * 84.99933 * 17 2 1 19 19 O 1.21544 * 119.99873 * 0.02562 * 18 17 2 20 20 C 1.47859 * 119.99845 * 180.02562 * 18 17 2 21 21 C 1.39612 * 119.97225 * 0.02562 * 20 18 17 22 22 C 1.38094 * 119.68651 * 179.97438 * 21 20 18 23 23 C 1.37852 * 120.10795 * 359.97438 * 22 21 20 24 24 C 1.39030 * 121.04308 * 0.02562 * 23 22 21 25 25 C 1.39121 * 119.08878 * 359.74528 * 24 23 22 26 26 N 1.39584 * 110.20918 * 179.97438 * 24 23 22 27 27 C 1.34356 * 112.24845 * 0.02562 * 26 24 23 28 28 O 1.21285 * 126.42088 * 180.02562 * 27 26 24 29 29 C 1.51184 * 132.65141 * 179.97438 * 23 22 21 30 30 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46801 * 300.00112 * 1 2 3 32 32 H 1.09001 * 109.46998 * 59.99708 * 1 2 3 33 33 H 1.08993 * 109.47768 * 305.00075 * 4 2 1 34 34 H 1.09005 * 109.47260 * 65.00844 * 4 2 1 35 35 H 1.09001 * 109.46642 * 300.00256 * 5 4 2 36 36 H 1.08999 * 109.47112 * 60.00003 * 5 4 2 37 37 H 1.09001 * 109.47240 * 299.99479 * 6 5 4 38 38 H 1.08999 * 109.47464 * 59.99808 * 6 5 4 39 39 H 1.09001 * 109.46642 * 299.99845 * 7 6 5 40 40 H 1.08997 * 109.46604 * 59.99609 * 7 6 5 41 41 H 0.96997 * 120.00390 * 0.02562 * 8 7 6 42 42 H 0.97006 * 119.99215 * 180.02562 * 12 11 9 43 43 H 0.96998 * 120.00176 * 265.00572 * 17 2 1 44 44 H 1.07996 * 120.16061 * 359.97438 * 21 20 18 45 45 H 1.07999 * 119.94329 * 179.97438 * 22 21 20 46 46 H 1.08002 * 119.99419 * 180.26594 * 25 24 23 47 47 H 0.96997 * 123.87430 * 179.97438 * 26 24 23 48 48 H 1.09004 * 110.50840 * 298.67157 * 29 23 22 49 49 H 1.08998 * 110.50977 * 61.37090 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5648 -0.6133 1.3139 6 6 4.0748 -1.3350 2.5627 7 6 5.5996 -1.2265 2.6276 8 7 6.0878 -1.9170 3.8238 9 6 7.4299 -1.9534 4.0936 10 1 8.1283 -1.4726 3.4247 11 6 7.8925 -2.6072 5.2273 12 7 9.1825 -2.6426 5.4863 13 14 6.6844 -3.4382 6.3847 14 1 6.4797 -4.8461 5.9592 15 1 7.2258 -3.4126 7.7672 16 1 5.3872 -2.7163 6.3477 17 7 2.0184 -0.6906 -1.1961 18 6 2.1472 -0.0182 -2.3571 19 8 1.8585 1.1612 -2.4115 20 6 2.6395 -0.7154 -3.5644 21 6 2.9704 -2.0703 -3.5013 22 6 3.4292 -2.7157 -4.6326 23 6 3.5590 -2.0246 -5.8183 24 6 3.2345 -0.6752 -5.9009 25 6 2.7673 -0.0213 -4.7654 26 7 3.4505 -0.2059 -7.1976 27 6 3.9087 -1.1671 -8.0168 28 8 4.1817 -1.0420 -9.1919 29 6 4.0222 -2.4350 -7.1977 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.6053 -0.2617 2.1370 34 1 1.7517 -1.7715 1.2056 35 1 3.9994 -1.0728 0.4261 36 1 3.8532 0.4370 1.3575 37 1 3.6402 -0.8757 3.4507 38 1 3.7864 -2.3852 2.5187 39 1 6.0345 -1.6854 1.7397 40 1 5.8875 -0.1761 2.6718 41 1 5.4606 -2.3491 4.4244 42 1 9.5058 -3.0998 6.2784 43 1 2.2491 -1.6317 -1.1525 44 1 2.8681 -2.6111 -2.5721 45 1 3.6868 -3.7636 -4.5884 46 1 2.5068 1.0258 -4.8141 47 1 3.2876 0.7091 -7.4755 48 1 5.0562 -2.7786 -7.1668 49 1 3.3730 -3.2108 -7.6035 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170953922.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:49 Heat of formation + Delta-G solvation = -66.375874 kcal Electronic energy + Delta-G solvation = -28577.461219 eV Core-core repulsion = 24503.047644 eV Total energy + Delta-G solvation = -4074.413575 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.51746 -41.06023 -39.30617 -38.06512 -36.94303 -36.68863 -34.77641 -33.48702 -33.15683 -31.95656 -30.60378 -29.26996 -28.98215 -25.80718 -24.42531 -23.77542 -23.31212 -22.47791 -22.13149 -21.68467 -21.31300 -19.61686 -19.39476 -18.16527 -17.59326 -17.32088 -17.10933 -16.61863 -16.35853 -16.16892 -15.95174 -15.71617 -15.62941 -15.11794 -14.92932 -14.85057 -14.61258 -14.54918 -14.32739 -14.13866 -14.11261 -13.57962 -13.40070 -13.15025 -13.03494 -12.93843 -12.89984 -12.42933 -12.28131 -12.20964 -12.03542 -11.93826 -11.86611 -11.75528 -11.48053 -11.43111 -11.39927 -11.01102 -10.95413 -10.16750 -9.88520 -9.29348 -9.17937 -8.02648 -5.36778 -0.29645 0.14778 1.29365 1.39059 1.43960 1.51606 1.82504 1.85383 2.23426 2.49802 2.79649 3.04382 3.28391 3.33147 3.51470 3.72183 3.79008 3.93828 4.04940 4.11669 4.14285 4.17164 4.28839 4.37940 4.42433 4.48749 4.60783 4.67642 4.75169 4.78671 4.82799 4.90906 4.92540 4.96968 5.01629 5.05966 5.15159 5.23659 5.26497 5.29154 5.35693 5.44479 5.47900 5.54321 5.61024 5.66281 5.75504 5.86252 6.21697 6.54856 6.83840 7.08668 7.20739 7.85060 8.05343 9.18978 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011309 B = 0.001893 C = 0.001689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2475.253502 B =14786.349165 C =16573.424102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.142 3.858 3 H 0.067 0.933 4 C -0.116 4.116 5 C -0.109 4.109 6 C -0.116 4.116 7 C 0.149 3.851 8 N -0.760 5.760 9 C -0.241 4.241 10 H 0.051 0.949 11 C -0.069 4.069 12 N -0.986 5.986 13 Si 0.963 3.037 14 H -0.273 1.273 15 H -0.296 1.296 16 H -0.249 1.249 17 N -0.703 5.703 18 C 0.557 3.443 19 O -0.581 6.581 20 C -0.116 4.116 21 C -0.094 4.094 22 C -0.065 4.065 23 C -0.113 4.113 24 C 0.118 3.882 25 C -0.091 4.091 26 N -0.656 5.656 27 C 0.522 3.478 28 O -0.548 6.548 29 C -0.109 4.109 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.040 0.960 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.068 0.932 36 H 0.051 0.949 37 H 0.063 0.937 38 H 0.075 0.925 39 H 0.023 0.977 40 H 0.012 0.988 41 H 0.368 0.632 42 H 0.258 0.742 43 H 0.414 0.586 44 H 0.162 0.838 45 H 0.172 0.828 46 H 0.127 0.873 47 H 0.418 0.582 48 H 0.148 0.852 49 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.767 -2.014 -22.785 32.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.038 3.962 3 H 0.085 0.915 4 C -0.154 4.154 5 C -0.147 4.147 6 C -0.154 4.154 7 C 0.023 3.977 8 N -0.406 5.406 9 C -0.372 4.372 10 H 0.069 0.931 11 C -0.261 4.261 12 N -0.636 5.636 13 Si 0.789 3.211 14 H -0.199 1.199 15 H -0.223 1.223 16 H -0.173 1.173 17 N -0.355 5.355 18 C 0.345 3.655 19 O -0.462 6.462 20 C -0.119 4.119 21 C -0.113 4.113 22 C -0.083 4.083 23 C -0.116 4.116 24 C 0.021 3.979 25 C -0.112 4.112 26 N -0.299 5.299 27 C 0.312 3.688 28 O -0.426 6.426 29 C -0.147 4.147 30 H 0.092 0.908 31 H 0.095 0.905 32 H 0.059 0.941 33 H 0.107 0.893 34 H 0.109 0.891 35 H 0.086 0.914 36 H 0.070 0.930 37 H 0.082 0.918 38 H 0.093 0.907 39 H 0.041 0.959 40 H 0.031 0.969 41 H 0.201 0.799 42 H 0.067 0.933 43 H 0.253 0.747 44 H 0.180 0.820 45 H 0.190 0.810 46 H 0.145 0.855 47 H 0.257 0.743 48 H 0.166 0.834 49 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -22.582 -1.160 -23.526 32.630 hybrid contribution 0.144 0.347 0.636 0.739 sum -22.437 -0.813 -22.889 32.063 Atomic orbital electron populations 1.22124 0.94277 1.03043 1.02152 1.21020 0.94505 0.96798 0.83894 0.91524 1.21857 0.94538 1.02307 0.96668 1.21453 0.95923 1.00166 0.97185 1.21664 0.92986 1.01689 0.99028 1.20866 0.94597 0.94281 0.87983 1.42748 1.03422 1.66726 1.27717 1.19065 0.84087 1.28077 1.05960 0.93098 1.25640 0.97756 1.02168 1.00495 1.69912 1.14330 1.49870 1.29481 0.85292 0.79188 0.78959 0.77632 1.19920 1.22331 1.17319 1.45931 1.66077 1.14735 1.08793 1.18472 0.77028 0.86004 0.83982 1.90760 1.52275 1.17464 1.85702 1.19565 1.04387 0.95339 0.92642 1.21567 0.97375 0.92107 1.00274 1.20604 0.96856 1.01760 0.89113 1.20301 1.02147 0.92701 0.96459 1.18012 1.00523 0.94328 0.85014 1.20348 1.00450 1.00531 0.89918 1.43797 1.62845 1.14587 1.08688 1.21112 0.74487 0.87416 0.85743 1.90817 1.51495 1.84468 1.15848 1.21205 1.07212 0.96475 0.89851 0.90783 0.90515 0.94089 0.89339 0.89078 0.91351 0.92969 0.91834 0.90667 0.95898 0.96948 0.79904 0.93294 0.74700 0.82008 0.81016 0.85491 0.74323 0.83424 0.83056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.03 9.48 71.98 0.68 -1.35 16 2 C 0.14 2.09 2.57 44.99 0.12 2.20 16 3 H 0.07 1.34 7.58 -2.39 -0.02 1.32 16 4 C -0.12 -1.46 4.75 30.60 0.15 -1.31 16 5 C -0.11 -2.02 5.10 30.59 0.16 -1.87 16 6 C -0.12 -2.85 5.33 30.59 0.16 -2.69 16 7 C 0.15 5.45 6.26 86.38 0.54 5.99 16 8 N -0.76 -35.27 5.41 -343.44 -1.86 -37.12 16 9 C -0.24 -13.94 10.47 84.03 0.88 -13.06 16 10 H 0.05 3.25 8.06 -2.91 -0.02 3.23 16 11 C -0.07 -4.11 5.50 84.86 0.47 -3.64 16 12 N -0.99 -63.49 13.97 21.65 0.30 -63.18 16 13 Si 0.96 44.68 27.74 68.60 1.90 46.58 16 14 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 15 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 16 H -0.25 -10.25 6.52 99.48 0.65 -9.61 16 17 N -0.70 -9.43 4.48 -445.40 -2.00 -11.43 16 18 C 0.56 10.65 7.74 86.79 0.67 11.32 16 19 O -0.58 -16.06 15.99 -3.85 -0.06 -16.12 16 20 C -0.12 -1.71 5.86 -20.14 -0.12 -1.83 16 21 C -0.09 -0.77 9.55 22.57 0.22 -0.55 16 22 C -0.07 -0.40 10.02 22.14 0.22 -0.18 16 23 C -0.11 -1.04 6.35 -19.61 -0.12 -1.17 16 24 C 0.12 1.57 7.10 38.31 0.27 1.84 16 25 C -0.09 -1.44 9.62 22.74 0.22 -1.23 16 26 N -0.66 -8.75 5.88 -303.30 -1.78 -10.54 16 27 C 0.52 7.98 8.71 87.94 0.77 8.75 16 28 O -0.55 -12.86 18.03 -3.05 -0.05 -12.91 16 29 C -0.11 -0.79 6.88 29.47 0.20 -0.59 16 30 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.04 0.69 8.14 -2.39 -0.02 0.68 16 33 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.09 0.81 8.14 -2.38 -0.02 0.79 16 35 H 0.07 1.20 7.75 -2.39 -0.02 1.18 16 36 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 41 H 0.37 15.85 5.53 -92.71 -0.51 15.34 16 42 H 0.26 15.76 8.31 -92.70 -0.77 14.99 16 43 H 0.41 3.06 6.62 -92.71 -0.61 2.45 16 44 H 0.16 0.40 6.39 -2.91 -0.02 0.38 16 45 H 0.17 -0.03 8.06 -2.91 -0.02 -0.05 16 46 H 0.13 2.27 7.63 -2.91 -0.02 2.24 16 47 H 0.42 4.65 8.96 -92.71 -0.83 3.82 16 48 H 0.15 0.58 8.14 -2.39 -0.02 0.57 16 49 H 0.15 0.43 8.14 -2.39 -0.02 0.41 16 Total: -1.00 -83.82 406.11 0.90 -82.91 By element: Atomic # 1 Polarization: 22.18 SS G_CDS: -1.02 Total: 21.16 kcal Atomic # 6 Polarization: -4.82 SS G_CDS: 5.48 Total: 0.66 kcal Atomic # 7 Polarization: -116.94 SS G_CDS: -5.33 Total: -122.27 kcal Atomic # 8 Polarization: -28.92 SS G_CDS: -0.12 Total: -29.03 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 1.90 Total: 46.58 kcal Total: -83.82 0.90 -82.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170953922.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.536 kcal (2) G-P(sol) polarization free energy of solvation -83.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds