Wall clock time and date at job start Wed Apr 1 2020 04:12:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46950 * 2 1 4 4 C 1.53005 * 109.46942 * 240.00214 * 2 1 3 5 5 C 1.53003 * 109.46951 * 174.99683 * 4 2 1 6 6 C 1.52999 * 109.46686 * 179.97438 * 5 4 2 7 7 C 1.53005 * 109.46639 * 180.02562 * 6 5 4 8 8 N 1.46506 * 109.46623 * 180.02562 * 7 6 5 9 9 C 1.36941 * 119.99467 * 179.97438 * 8 7 6 10 10 H 1.07995 * 120.00436 * 359.97438 * 9 8 7 11 11 C 1.38809 * 119.99662 * 179.97438 * 9 8 7 12 12 N 1.31623 * 120.00468 * 359.97438 * 11 9 8 13 13 Si 1.86804 * 119.99911 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.47191 * 0.02562 * 13 11 9 15 15 H 1.48504 * 109.46920 * 119.99884 * 13 11 9 16 16 H 1.48500 * 109.47209 * 239.99706 * 13 11 9 17 17 N 1.46497 * 109.47502 * 120.00377 * 2 1 3 18 18 C 1.34782 * 119.99634 * 275.00034 * 17 2 1 19 19 O 1.21273 * 120.00260 * 359.97438 * 18 17 2 20 20 C 1.50704 * 119.99502 * 179.97438 * 18 17 2 21 21 C 1.50705 * 109.46825 * 179.97438 * 20 18 17 22 22 N 1.29740 * 126.29138 * 269.98101 * 21 20 18 23 23 O 1.41347 * 109.74175 * 180.02562 * 22 21 20 24 24 C 1.34826 * 109.33119 * 359.97438 * 23 22 21 25 25 C 1.38983 * 133.45153 * 180.02562 * 24 23 22 26 26 C 1.37794 * 119.79420 * 179.97438 * 25 24 23 27 27 C 1.38785 * 120.59884 * 0.02562 * 26 25 24 28 28 C 1.36622 * 120.51766 * 359.97438 * 27 26 25 29 29 C 1.39679 * 119.79071 * 0.02562 * 28 27 26 30 30 H 1.09001 * 109.46950 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46869 * 299.99960 * 1 2 3 32 32 H 1.09005 * 109.47074 * 59.99857 * 1 2 3 33 33 H 1.08995 * 109.47064 * 294.99650 * 4 2 1 34 34 H 1.09004 * 109.47133 * 54.99899 * 4 2 1 35 35 H 1.08995 * 109.47210 * 299.99878 * 5 4 2 36 36 H 1.09004 * 109.47026 * 60.00150 * 5 4 2 37 37 H 1.08995 * 109.47263 * 299.99926 * 6 5 4 38 38 H 1.09005 * 109.47565 * 60.00737 * 6 5 4 39 39 H 1.08998 * 109.47371 * 299.99505 * 7 6 5 40 40 H 1.08991 * 109.47248 * 60.00352 * 7 6 5 41 41 H 0.96996 * 120.00405 * 359.97438 * 8 7 6 42 42 H 0.96998 * 120.00324 * 179.97438 * 12 11 9 43 43 H 0.96999 * 120.00139 * 94.99590 * 17 2 1 44 44 H 1.09000 * 109.47152 * 60.00202 * 20 18 17 45 45 H 1.08992 * 109.47583 * 299.99995 * 20 18 17 46 46 H 1.07993 * 120.10175 * 359.95456 * 25 24 23 47 47 H 1.08005 * 119.70221 * 179.97438 * 26 25 24 48 48 H 1.08001 * 119.74182 * 179.72896 * 27 26 25 49 49 H 1.08005 * 120.10535 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.6132 -1.3138 6 6 4.0748 -1.3350 -2.5628 7 6 5.5997 -1.2275 -2.6269 8 7 6.0879 -1.9181 -3.8232 9 6 7.4300 -1.9544 -4.0929 10 1 8.1285 -1.4736 -3.4241 11 6 7.8927 -2.6091 -5.2260 12 7 7.0416 -3.1956 -6.0410 13 14 9.7234 -2.6581 -5.5944 14 1 10.4619 -1.9301 -4.5313 15 1 10.1822 -4.0698 -5.6371 16 1 9.9816 -2.0138 -6.9072 17 7 2.0184 -0.6907 1.1961 18 6 2.1472 -0.0183 2.3571 19 8 1.8591 1.1585 2.4115 20 6 2.6491 -0.7289 3.5876 21 6 2.7005 0.2396 4.7411 22 7 3.7091 0.9846 5.0739 23 8 3.3773 1.7581 6.2094 24 6 2.1143 1.4763 6.5878 25 6 1.2993 1.9359 7.6155 26 6 0.0188 1.4438 7.7461 27 6 -0.4658 0.4917 6.8603 28 6 0.3193 0.0269 5.8434 29 6 1.6203 0.5127 5.6934 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8901 32 1 -0.3633 0.5139 -0.8900 33 1 1.7517 -1.7715 -1.2057 34 1 1.6053 -0.2617 -2.1371 35 1 3.8531 0.4370 -1.3575 36 1 3.9995 -1.0728 -0.4261 37 1 3.7865 -2.3852 -2.5187 38 1 3.6402 -0.8758 -3.4508 39 1 5.8884 -0.1773 -2.6709 40 1 6.0340 -1.6869 -1.7391 41 1 5.4606 -2.3496 -4.4241 42 1 7.3649 -3.6528 -6.8330 43 1 2.2491 -1.6318 1.1525 44 1 3.6482 -1.1214 3.3984 45 1 1.9763 -1.5507 3.8325 46 1 1.6685 2.6762 8.3097 47 1 -0.6131 1.8017 8.5455 48 1 -1.4701 0.1123 6.9781 49 1 -0.0648 -0.7139 5.1576 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171715124.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:02 Heat of formation + Delta-G solvation = 17.305364 kcal Electronic energy + Delta-G solvation = -28534.283173 eV Core-core repulsion = 24463.498288 eV Total energy + Delta-G solvation = -4070.784885 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.18464 -40.17826 -38.15845 -37.15700 -35.34335 -34.87646 -33.33240 -31.91974 -31.08905 -30.52743 -30.43655 -29.34751 -27.47921 -24.31180 -23.76546 -23.12825 -22.70116 -21.73725 -20.87398 -20.67204 -20.37976 -18.00636 -17.68406 -17.59148 -17.00782 -16.48839 -16.13845 -15.98813 -15.63842 -15.10706 -14.72149 -14.65406 -14.28388 -14.18704 -14.06665 -13.73507 -13.58666 -13.16905 -13.14728 -12.97472 -12.74812 -12.69038 -12.65894 -12.41889 -11.80747 -11.72679 -11.61423 -11.51264 -11.47509 -11.29446 -11.02624 -10.82418 -10.73190 -10.42349 -10.33362 -10.20243 -9.96683 -9.67370 -9.39695 -9.35909 -9.06310 -8.85854 -6.89798 -5.75245 -3.03573 0.18515 0.81842 1.56090 2.09055 2.24791 2.82679 3.16183 3.44247 3.49968 3.52278 3.52306 3.79149 4.09085 4.28900 4.43582 4.48602 4.58669 4.65096 4.67624 4.68642 4.83234 4.84796 4.93159 4.95544 5.20635 5.26475 5.35235 5.38697 5.40218 5.53110 5.58532 5.62839 5.65574 5.72893 5.74954 5.84472 5.86217 5.90681 6.05969 6.14804 6.15622 6.28813 6.31432 6.37688 6.45641 6.84399 6.89356 6.93208 7.13362 7.72293 7.85064 8.44205 9.55106 10.14157 10.48714 11.47901 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.017485 B = 0.001632 C = 0.001524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.980989 B =17147.952823 C =18363.545066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.141 3.859 3 H 0.089 0.911 4 C -0.127 4.127 5 C -0.115 4.115 6 C -0.125 4.125 7 C 0.152 3.848 8 N -0.735 5.735 9 C -0.238 4.238 10 H 0.070 0.930 11 C -0.016 4.016 12 N -0.935 5.935 13 Si 0.907 3.093 14 H -0.280 1.280 15 H -0.291 1.291 16 H -0.291 1.291 17 N -0.718 5.718 18 C 0.521 3.479 19 O -0.528 6.528 20 C -0.078 4.078 21 C 0.152 3.848 22 N -0.270 5.270 23 O -0.089 6.089 24 C 0.085 3.915 25 C -0.126 4.126 26 C -0.062 4.062 27 C -0.150 4.150 28 C -0.037 4.037 29 C -0.184 4.184 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.061 0.939 39 H 0.017 0.983 40 H 0.016 0.984 41 H 0.383 0.617 42 H 0.254 0.746 43 H 0.403 0.597 44 H 0.126 0.874 45 H 0.125 0.875 46 H 0.139 0.861 47 H 0.140 0.860 48 H 0.135 0.865 49 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.726 4.690 28.077 35.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.037 3.963 3 H 0.107 0.893 4 C -0.165 4.165 5 C -0.153 4.153 6 C -0.163 4.163 7 C 0.024 3.976 8 N -0.379 5.379 9 C -0.370 4.370 10 H 0.088 0.912 11 C -0.212 4.212 12 N -0.584 5.584 13 Si 0.738 3.262 14 H -0.206 1.206 15 H -0.219 1.219 16 H -0.218 1.218 17 N -0.370 5.370 18 C 0.304 3.696 19 O -0.404 6.404 20 C -0.119 4.119 21 C -0.030 4.030 22 N -0.012 5.012 23 O -0.100 6.100 24 C 0.031 3.969 25 C -0.146 4.146 26 C -0.082 4.082 27 C -0.169 4.169 28 C -0.057 4.057 29 C -0.188 4.188 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.099 0.901 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.034 0.966 40 H 0.034 0.966 41 H 0.216 0.784 42 H 0.064 0.936 43 H 0.238 0.762 44 H 0.144 0.856 45 H 0.143 0.857 46 H 0.157 0.843 47 H 0.158 0.842 48 H 0.152 0.848 49 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -20.448 6.028 27.924 35.131 hybrid contribution 0.268 -0.890 -0.414 1.018 sum -20.180 5.138 27.510 34.502 Atomic orbital electron populations 1.22175 0.95238 1.02120 1.02570 1.21089 0.93800 0.97799 0.83624 0.89255 1.21946 0.96930 1.00950 0.96635 1.21529 0.93891 1.01177 0.98692 1.21725 0.97277 1.00237 0.97086 1.20654 0.90991 0.95363 0.90570 1.42393 1.05340 1.64968 1.25184 1.19312 0.83945 1.28245 1.05467 0.91155 1.24746 0.97733 1.00969 0.97708 1.69672 1.32684 1.40853 1.15155 0.86112 0.85082 0.77213 0.77787 1.20553 1.21865 1.21847 1.46031 1.67306 1.14244 1.09442 1.20024 0.78068 0.87316 0.84150 1.90777 1.49245 1.15618 1.84780 1.20268 1.06388 0.96350 0.88854 1.23696 0.90521 0.94298 0.94485 1.79911 1.18913 1.05384 0.97016 1.89178 1.25349 1.55934 1.39533 1.20304 0.86328 0.94670 0.95619 1.20081 0.93221 1.03483 0.97771 1.21157 0.93983 0.94796 0.98220 1.20809 1.00703 0.99301 0.96041 1.20428 0.90698 0.97713 0.96884 1.20610 0.97198 1.03188 0.97798 0.92380 0.92324 0.91405 0.91226 0.90103 0.91963 0.92123 0.92110 0.92044 0.96563 0.96614 0.78362 0.93607 0.76210 0.85599 0.85656 0.84298 0.84239 0.84752 0.85023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.27 9.48 37.16 0.35 -0.92 16 2 C 0.14 1.24 2.57 -67.93 -0.17 1.07 16 3 H 0.09 1.00 7.58 -51.93 -0.39 0.61 16 4 C -0.13 -1.13 4.75 -26.73 -0.13 -1.26 16 5 C -0.11 -1.35 5.10 -26.73 -0.14 -1.49 16 6 C -0.13 -1.94 5.33 -26.73 -0.14 -2.08 16 7 C 0.15 3.11 6.26 -4.04 -0.03 3.09 16 8 N -0.73 -19.15 5.60 -59.91 -0.34 -19.49 16 9 C -0.24 -6.87 9.99 -15.06 -0.15 -7.02 16 10 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 11 C -0.02 -0.47 5.50 -17.43 -0.10 -0.56 16 12 N -0.93 -28.66 13.06 55.49 0.72 -27.94 16 13 Si 0.91 22.76 29.55 -169.99 -5.02 17.74 16 14 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 15 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 16 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 17 N -0.72 -5.47 4.53 -53.80 -0.24 -5.72 16 18 C 0.52 5.02 7.79 -10.98 -0.09 4.93 16 19 O -0.53 -7.53 15.70 5.56 0.09 -7.44 16 20 C -0.08 -0.54 6.30 -29.03 -0.18 -0.72 16 21 C 0.15 1.61 5.95 -80.12 -0.48 1.14 16 22 N -0.27 -3.62 12.81 34.91 0.45 -3.17 16 23 O -0.09 -1.18 12.06 7.67 0.09 -1.09 16 24 C 0.08 0.91 7.48 -38.47 -0.29 0.62 16 25 C -0.13 -0.94 10.07 -39.47 -0.40 -1.34 16 26 C -0.06 -0.34 10.02 -39.54 -0.40 -0.73 16 27 C -0.15 -0.82 9.97 -39.96 -0.40 -1.22 16 28 C -0.04 -0.26 10.05 -39.63 -0.40 -0.66 16 29 C -0.18 -1.82 6.32 -105.17 -0.67 -2.49 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.06 0.68 7.75 -51.93 -0.40 0.28 16 37 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 39 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 40 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.38 10.38 7.67 -40.82 -0.31 10.07 16 42 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 43 H 0.40 2.03 8.60 -40.82 -0.35 1.68 16 44 H 0.13 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.13 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 47 H 0.14 0.33 8.06 -52.48 -0.42 -0.10 16 48 H 0.13 0.38 8.06 -52.49 -0.42 -0.04 16 49 H 0.13 0.59 8.06 -52.48 -0.42 0.17 16 LS Contribution 415.27 15.07 6.26 6.26 Total: -1.00 -37.45 415.27 -9.55 -47.00 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: -7.77 Total: 3.49 kcal Atomic # 6 Polarization: -5.86 SS G_CDS: -3.79 Total: -9.65 kcal Atomic # 7 Polarization: -56.91 SS G_CDS: 0.59 Total: -56.31 kcal Atomic # 8 Polarization: -8.71 SS G_CDS: 0.18 Total: -8.53 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -5.02 Total: 17.74 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -37.45 -9.55 -47.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171715124.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.304 kcal (2) G-P(sol) polarization free energy of solvation -37.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds