Wall clock time and date at job start Wed Apr 1 2020 04:12:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46950 * 2 1 4 4 C 1.53005 * 109.46942 * 240.00214 * 2 1 3 5 5 C 1.53003 * 109.46951 * 174.99683 * 4 2 1 6 6 C 1.52999 * 109.46686 * 179.97438 * 5 4 2 7 7 C 1.53005 * 109.46639 * 180.02562 * 6 5 4 8 8 N 1.46506 * 109.46623 * 180.02562 * 7 6 5 9 9 C 1.36941 * 119.99467 * 179.97438 * 8 7 6 10 10 H 1.07995 * 120.00436 * 359.97438 * 9 8 7 11 11 C 1.38809 * 119.99662 * 179.97438 * 9 8 7 12 12 N 1.31623 * 120.00468 * 359.97438 * 11 9 8 13 13 Si 1.86804 * 119.99911 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.47191 * 0.02562 * 13 11 9 15 15 H 1.48504 * 109.46920 * 119.99884 * 13 11 9 16 16 H 1.48500 * 109.47209 * 239.99706 * 13 11 9 17 17 N 1.46497 * 109.47502 * 120.00377 * 2 1 3 18 18 C 1.34782 * 119.99634 * 275.00034 * 17 2 1 19 19 O 1.21273 * 120.00260 * 359.97438 * 18 17 2 20 20 C 1.50704 * 119.99502 * 179.97438 * 18 17 2 21 21 C 1.50705 * 109.46825 * 179.97438 * 20 18 17 22 22 N 1.29740 * 126.29138 * 269.98101 * 21 20 18 23 23 O 1.41347 * 109.74175 * 180.02562 * 22 21 20 24 24 C 1.34826 * 109.33119 * 359.97438 * 23 22 21 25 25 C 1.38983 * 133.45153 * 180.02562 * 24 23 22 26 26 C 1.37794 * 119.79420 * 179.97438 * 25 24 23 27 27 C 1.38785 * 120.59884 * 0.02562 * 26 25 24 28 28 C 1.36622 * 120.51766 * 359.97438 * 27 26 25 29 29 C 1.39679 * 119.79071 * 0.02562 * 28 27 26 30 30 H 1.09001 * 109.46950 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46869 * 299.99960 * 1 2 3 32 32 H 1.09005 * 109.47074 * 59.99857 * 1 2 3 33 33 H 1.08995 * 109.47064 * 294.99650 * 4 2 1 34 34 H 1.09004 * 109.47133 * 54.99899 * 4 2 1 35 35 H 1.08995 * 109.47210 * 299.99878 * 5 4 2 36 36 H 1.09004 * 109.47026 * 60.00150 * 5 4 2 37 37 H 1.08995 * 109.47263 * 299.99926 * 6 5 4 38 38 H 1.09005 * 109.47565 * 60.00737 * 6 5 4 39 39 H 1.08998 * 109.47371 * 299.99505 * 7 6 5 40 40 H 1.08991 * 109.47248 * 60.00352 * 7 6 5 41 41 H 0.96996 * 120.00405 * 359.97438 * 8 7 6 42 42 H 0.96998 * 120.00324 * 179.97438 * 12 11 9 43 43 H 0.96999 * 120.00139 * 94.99590 * 17 2 1 44 44 H 1.09000 * 109.47152 * 60.00202 * 20 18 17 45 45 H 1.08992 * 109.47583 * 299.99995 * 20 18 17 46 46 H 1.07993 * 120.10175 * 359.95456 * 25 24 23 47 47 H 1.08005 * 119.70221 * 179.97438 * 26 25 24 48 48 H 1.08001 * 119.74182 * 179.72896 * 27 26 25 49 49 H 1.08005 * 120.10535 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.6132 -1.3138 6 6 4.0748 -1.3350 -2.5628 7 6 5.5997 -1.2275 -2.6269 8 7 6.0879 -1.9181 -3.8232 9 6 7.4300 -1.9544 -4.0929 10 1 8.1285 -1.4736 -3.4241 11 6 7.8927 -2.6091 -5.2260 12 7 7.0416 -3.1956 -6.0410 13 14 9.7234 -2.6581 -5.5944 14 1 10.4619 -1.9301 -4.5313 15 1 10.1822 -4.0698 -5.6371 16 1 9.9816 -2.0138 -6.9072 17 7 2.0184 -0.6907 1.1961 18 6 2.1472 -0.0183 2.3571 19 8 1.8591 1.1585 2.4115 20 6 2.6491 -0.7289 3.5876 21 6 2.7005 0.2396 4.7411 22 7 3.7091 0.9846 5.0739 23 8 3.3773 1.7581 6.2094 24 6 2.1143 1.4763 6.5878 25 6 1.2993 1.9359 7.6155 26 6 0.0188 1.4438 7.7461 27 6 -0.4658 0.4917 6.8603 28 6 0.3193 0.0269 5.8434 29 6 1.6203 0.5127 5.6934 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8901 32 1 -0.3633 0.5139 -0.8900 33 1 1.7517 -1.7715 -1.2057 34 1 1.6053 -0.2617 -2.1371 35 1 3.8531 0.4370 -1.3575 36 1 3.9995 -1.0728 -0.4261 37 1 3.7865 -2.3852 -2.5187 38 1 3.6402 -0.8758 -3.4508 39 1 5.8884 -0.1773 -2.6709 40 1 6.0340 -1.6869 -1.7391 41 1 5.4606 -2.3496 -4.4241 42 1 7.3649 -3.6528 -6.8330 43 1 2.2491 -1.6318 1.1525 44 1 3.6482 -1.1214 3.3984 45 1 1.9763 -1.5507 3.8325 46 1 1.6685 2.6762 8.3097 47 1 -0.6131 1.8017 8.5455 48 1 -1.4701 0.1123 6.9781 49 1 -0.0648 -0.7139 5.1576 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171715124.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:01 Heat of formation + Delta-G solvation = -7.734299 kcal Electronic energy + Delta-G solvation = -28535.368974 eV Core-core repulsion = 24463.498288 eV Total energy + Delta-G solvation = -4071.870686 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.86692 -40.94123 -38.70896 -38.11712 -36.87292 -35.63630 -34.79640 -33.13208 -32.00873 -31.55466 -31.09498 -30.04200 -28.80862 -25.94976 -24.38354 -23.89933 -23.71976 -22.84459 -22.02720 -21.59481 -21.06880 -19.13754 -18.59441 -18.38005 -18.22233 -17.25098 -16.91322 -16.69494 -16.53791 -16.35545 -16.14886 -15.43792 -15.32988 -15.22154 -14.91706 -14.81643 -14.66271 -14.31963 -14.19170 -14.07960 -13.48233 -13.28912 -13.21389 -13.11882 -13.02411 -12.90210 -12.85943 -12.46306 -12.39147 -12.29134 -12.26228 -12.12114 -12.08428 -11.89424 -11.80686 -11.49241 -11.39297 -10.99738 -10.95905 -10.10803 -9.98759 -9.63809 -9.02245 -7.97963 -5.27037 -0.41535 0.26230 0.90045 1.38947 1.45938 1.46751 1.53141 1.57132 2.18628 2.54131 2.63450 2.91676 3.16393 3.35507 3.54889 3.58704 3.73624 4.01129 4.04476 4.06578 4.08987 4.15428 4.21195 4.27652 4.34955 4.36675 4.43031 4.46990 4.61337 4.65902 4.75834 4.80622 4.88525 4.91139 4.94127 5.00276 5.03150 5.09446 5.13395 5.27618 5.28237 5.34248 5.38737 5.44009 5.45653 5.53456 5.58024 5.69510 6.13962 6.25378 6.50935 7.19829 7.31146 8.07709 8.31323 9.25733 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.017485 B = 0.001632 C = 0.001524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.980989 B =17147.952823 C =18363.545066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.144 3.856 3 H 0.061 0.939 4 C -0.116 4.116 5 C -0.107 4.107 6 C -0.112 4.112 7 C 0.147 3.853 8 N -0.748 5.748 9 C -0.251 4.251 10 H 0.072 0.928 11 C -0.074 4.074 12 N -0.968 5.968 13 Si 0.974 3.026 14 H -0.269 1.269 15 H -0.289 1.289 16 H -0.291 1.291 17 N -0.704 5.704 18 C 0.521 3.479 19 O -0.581 6.581 20 C -0.074 4.074 21 C 0.154 3.846 22 N -0.320 5.320 23 O -0.124 6.124 24 C 0.047 3.953 25 C -0.141 4.141 26 C -0.051 4.051 27 C -0.146 4.146 28 C -0.042 4.042 29 C -0.206 4.206 30 H 0.076 0.924 31 H 0.043 0.957 32 H 0.072 0.928 33 H 0.090 0.910 34 H 0.084 0.916 35 H 0.049 0.951 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.056 0.944 39 H 0.009 0.991 40 H 0.019 0.981 41 H 0.375 0.625 42 H 0.252 0.748 43 H 0.419 0.581 44 H 0.142 0.858 45 H 0.171 0.829 46 H 0.151 0.849 47 H 0.177 0.823 48 H 0.170 0.830 49 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.866 3.160 29.239 37.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.040 3.960 3 H 0.079 0.921 4 C -0.153 4.153 5 C -0.145 4.145 6 C -0.149 4.149 7 C 0.020 3.980 8 N -0.391 5.391 9 C -0.383 4.383 10 H 0.090 0.910 11 C -0.267 4.267 12 N -0.619 5.619 13 Si 0.803 3.197 14 H -0.193 1.193 15 H -0.216 1.216 16 H -0.218 1.218 17 N -0.357 5.357 18 C 0.306 3.694 19 O -0.461 6.461 20 C -0.114 4.114 21 C -0.027 4.027 22 N -0.065 5.065 23 O -0.133 6.133 24 C -0.006 4.006 25 C -0.161 4.161 26 C -0.070 4.070 27 C -0.164 4.164 28 C -0.062 4.062 29 C -0.210 4.210 30 H 0.095 0.905 31 H 0.062 0.938 32 H 0.091 0.909 33 H 0.109 0.891 34 H 0.102 0.898 35 H 0.068 0.932 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.074 0.926 39 H 0.027 0.973 40 H 0.037 0.963 41 H 0.206 0.794 42 H 0.061 0.939 43 H 0.257 0.743 44 H 0.160 0.840 45 H 0.189 0.811 46 H 0.169 0.831 47 H 0.194 0.806 48 H 0.188 0.812 49 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -22.597 4.486 29.125 37.135 hybrid contribution 0.818 -0.391 -0.710 1.152 sum -21.779 4.095 28.415 36.035 Atomic orbital electron populations 1.22101 0.93992 1.03181 1.02106 1.20957 0.94687 0.96460 0.83941 0.92114 1.21844 0.94437 1.02290 0.96759 1.21444 0.96072 0.99895 0.97071 1.21597 0.93524 1.01115 0.98714 1.20874 0.94465 0.94116 0.88519 1.42621 1.04482 1.65362 1.26632 1.19696 0.85393 1.27711 1.05496 0.90984 1.25583 1.02185 1.01145 0.97770 1.69816 1.34585 1.41880 1.15591 0.85062 0.79924 0.77135 0.77560 1.19315 1.21630 1.21841 1.45922 1.66345 1.14900 1.08534 1.20419 0.77167 0.86689 0.85093 1.90764 1.51726 1.17996 1.85623 1.20492 1.08357 0.96218 0.86320 1.24319 0.90094 0.93436 0.94836 1.79810 1.21093 1.07337 0.98265 1.89076 1.27120 1.56944 1.40184 1.20905 0.86021 0.96252 0.97381 1.20482 0.93968 1.04168 0.97466 1.21671 0.93089 0.93634 0.98595 1.21322 1.01879 0.98325 0.94826 1.20850 0.89472 0.98059 0.97793 1.20885 0.98441 1.03887 0.97793 0.90457 0.93783 0.90939 0.89110 0.89769 0.93189 0.91251 0.91483 0.92563 0.97266 0.96324 0.79354 0.93871 0.74274 0.84006 0.81113 0.83134 0.80605 0.81240 0.82358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.12 9.48 71.98 0.68 -1.44 16 2 C 0.14 2.34 2.57 44.99 0.12 2.45 16 3 H 0.06 1.37 7.58 -2.39 -0.02 1.35 16 4 C -0.12 -1.80 4.75 30.60 0.15 -1.65 16 5 C -0.11 -2.35 5.10 30.59 0.16 -2.20 16 6 C -0.11 -3.33 5.33 30.60 0.16 -3.17 16 7 C 0.15 5.97 6.26 86.38 0.54 6.51 16 8 N -0.75 -39.17 5.60 -343.45 -1.92 -41.09 16 9 C -0.25 -14.49 9.99 84.03 0.84 -13.65 16 10 H 0.07 4.04 7.83 -2.91 -0.02 4.01 16 11 C -0.07 -4.36 5.50 84.86 0.47 -3.89 16 12 N -0.97 -59.75 13.06 21.65 0.28 -59.47 16 13 Si 0.97 46.81 29.55 68.60 2.03 48.83 16 14 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 15 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 16 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 17 N -0.70 -9.33 4.53 -442.52 -2.00 -11.33 16 18 C 0.52 9.58 7.79 87.66 0.68 10.26 16 19 O -0.58 -17.01 15.70 -3.01 -0.05 -17.06 16 20 C -0.07 -0.91 6.30 29.10 0.18 -0.73 16 21 C 0.15 3.36 5.95 45.04 0.27 3.63 16 22 N -0.32 -9.29 12.81 -43.47 -0.56 -9.85 16 23 O -0.12 -3.65 12.06 29.83 0.36 -3.29 16 24 C 0.05 1.08 7.48 22.99 0.17 1.26 16 25 C -0.14 -2.10 10.07 22.34 0.23 -1.87 16 26 C -0.05 -0.42 10.02 22.30 0.22 -0.20 16 27 C -0.15 -1.12 9.97 22.02 0.22 -0.90 16 28 C -0.04 -0.49 10.05 22.24 0.22 -0.27 16 29 C -0.21 -4.09 6.32 -20.22 -0.13 -4.21 16 30 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.04 0.75 8.14 -2.38 -0.02 0.73 16 32 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 33 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 35 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.07 1.41 7.75 -2.38 -0.02 1.40 16 37 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 39 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 40 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.37 20.51 7.67 -92.71 -0.71 19.80 16 42 H 0.25 14.98 8.31 -92.71 -0.77 14.21 16 43 H 0.42 2.84 8.60 -92.71 -0.80 2.05 16 44 H 0.14 1.30 8.14 -2.39 -0.02 1.28 16 45 H 0.17 0.44 8.14 -2.39 -0.02 0.42 16 46 H 0.15 1.67 8.06 -2.91 -0.02 1.64 16 47 H 0.18 0.11 8.06 -2.91 -0.02 0.09 16 48 H 0.17 0.11 8.06 -2.91 -0.02 0.09 16 49 H 0.16 0.87 8.06 -2.91 -0.02 0.85 16 Total: -1.00 -85.95 415.27 2.77 -83.18 By element: Atomic # 1 Polarization: 20.69 SS G_CDS: -0.54 Total: 20.15 kcal Atomic # 6 Polarization: -15.26 SS G_CDS: 5.18 Total: -10.08 kcal Atomic # 7 Polarization: -117.54 SS G_CDS: -4.20 Total: -121.74 kcal Atomic # 8 Polarization: -20.66 SS G_CDS: 0.31 Total: -20.35 kcal Atomic # 14 Polarization: 46.81 SS G_CDS: 2.03 Total: 48.83 kcal Total: -85.95 2.77 -83.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171715124.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.448 kcal (2) G-P(sol) polarization free energy of solvation -85.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds