Wall clock time and date at job start Wed Apr 1 2020 04:12:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46950 * 2 1 4 4 C 1.52994 * 109.47172 * 119.99915 * 2 1 3 5 5 C 1.53005 * 109.46891 * 185.00069 * 4 2 1 6 6 C 1.53004 * 109.46866 * 180.02562 * 5 4 2 7 7 C 1.53005 * 109.46866 * 180.02562 * 6 5 4 8 8 N 1.46500 * 109.46969 * 179.97438 * 7 6 5 9 9 C 1.36935 * 119.99902 * 179.97438 * 8 7 6 10 10 H 1.08001 * 120.00004 * 0.02562 * 9 8 7 11 11 C 1.38812 * 120.00127 * 179.97438 * 9 8 7 12 12 N 1.31616 * 120.00445 * 180.02562 * 11 9 8 13 13 Si 1.86805 * 119.99749 * 0.02562 * 11 9 8 14 14 H 1.48504 * 109.47100 * 89.99985 * 13 11 9 15 15 H 1.48497 * 109.47090 * 209.99644 * 13 11 9 16 16 H 1.48490 * 109.47227 * 329.99677 * 13 11 9 17 17 N 1.46502 * 109.47079 * 240.00144 * 2 1 3 18 18 C 1.34781 * 120.00244 * 84.99716 * 17 2 1 19 19 O 1.21281 * 119.99369 * 359.97438 * 18 17 2 20 20 C 1.50696 * 119.99803 * 179.97438 * 18 17 2 21 21 C 1.50705 * 109.46578 * 179.97438 * 20 18 17 22 22 N 1.29740 * 126.29138 * 269.99414 * 21 20 18 23 23 O 1.41361 * 109.74059 * 180.02562 * 22 21 20 24 24 C 1.34820 * 109.32695 * 0.02562 * 23 22 21 25 25 C 1.38983 * 133.44621 * 179.97438 * 24 23 22 26 26 C 1.37794 * 119.79420 * 180.02562 * 25 24 23 27 27 C 1.38785 * 120.59884 * 0.02562 * 26 25 24 28 28 C 1.36622 * 120.51766 * 359.97438 * 27 26 25 29 29 C 1.39679 * 119.79071 * 0.02562 * 28 27 26 30 30 H 1.08999 * 109.47570 * 299.99946 * 1 2 3 31 31 H 1.09000 * 109.47619 * 60.00528 * 1 2 3 32 32 H 1.09003 * 109.46950 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47322 * 304.99755 * 4 2 1 34 34 H 1.09005 * 109.47439 * 65.00315 * 4 2 1 35 35 H 1.08997 * 109.46881 * 299.99956 * 5 4 2 36 36 H 1.09001 * 109.47105 * 60.00351 * 5 4 2 37 37 H 1.08997 * 109.47316 * 299.99668 * 6 5 4 38 38 H 1.09001 * 109.46990 * 60.00258 * 6 5 4 39 39 H 1.08997 * 109.46881 * 299.99934 * 7 6 5 40 40 H 1.09001 * 109.47105 * 60.00329 * 7 6 5 41 41 H 0.97002 * 119.99744 * 0.02562 * 8 7 6 42 42 H 0.96994 * 120.00738 * 180.02562 * 12 11 9 43 43 H 0.96998 * 120.00055 * 264.99850 * 17 2 1 44 44 H 1.09002 * 109.47274 * 60.00609 * 20 18 17 45 45 H 1.08996 * 109.47109 * 299.99645 * 20 18 17 46 46 H 1.08003 * 120.10178 * 359.97438 * 25 24 23 47 47 H 1.08005 * 119.70221 * 179.97438 * 26 25 24 48 48 H 1.08001 * 119.74182 * 179.72896 * 27 26 25 49 49 H 1.08005 * 120.10555 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5649 -0.6132 1.3136 6 6 4.0749 -1.3350 2.5625 7 6 5.5998 -1.2264 2.6273 8 7 6.0881 -1.9170 3.8234 9 6 7.4302 -1.9533 4.0931 10 1 8.1286 -1.4725 3.4241 11 6 7.8929 -2.6072 5.2267 12 7 9.1828 -2.6417 5.4862 13 14 6.6848 -3.4382 6.3841 14 1 6.4802 -4.8462 5.9586 15 1 7.2264 -3.4127 7.7666 16 1 5.3877 -2.7165 6.3473 17 7 2.0183 -0.6906 -1.1962 18 6 2.1470 -0.0182 -2.3572 19 8 1.8581 1.1584 -2.4117 20 6 2.6499 -0.7286 -3.5875 21 6 2.6998 0.2397 -4.7413 22 7 1.7433 0.4796 -5.5844 23 8 2.1665 1.4473 -6.5239 24 6 3.4334 1.8149 -6.2459 25 6 4.3193 2.7107 -6.8327 26 6 5.5818 2.8708 -6.3042 27 6 5.9785 2.1446 -5.1901 28 6 5.1228 1.2590 -4.5984 29 6 3.8386 1.0818 -5.1184 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6055 -0.2617 2.1369 34 1 1.7517 -1.7715 1.2056 35 1 3.9994 -1.0727 0.4259 36 1 3.8532 0.4371 1.3573 37 1 3.6404 -0.8759 3.4505 38 1 3.7866 -2.3852 2.5184 39 1 6.0346 -1.6852 1.7393 40 1 5.8877 -0.1760 2.6716 41 1 5.4608 -2.3491 4.4240 42 1 9.5062 -3.0989 6.2782 43 1 2.2491 -1.6317 -1.1527 44 1 1.9777 -1.5509 -3.8326 45 1 3.6492 -1.1202 -3.3979 46 1 4.0194 3.2791 -7.7008 47 1 6.2691 3.5670 -6.7617 48 1 6.9728 2.2777 -4.7899 49 1 5.4386 0.6970 -3.7318 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171715125.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:07 Heat of formation + Delta-G solvation = 21.015683 kcal Electronic energy + Delta-G solvation = -28779.137701 eV Core-core repulsion = 24708.513707 eV Total energy + Delta-G solvation = -4070.623993 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.15631 -40.21060 -38.09791 -37.23932 -35.53492 -34.88120 -33.41141 -31.96307 -31.07230 -30.76719 -30.44552 -29.38646 -27.82199 -24.36594 -23.70952 -23.07465 -22.58245 -21.58929 -20.99000 -20.82374 -20.37940 -17.95298 -17.73530 -17.58508 -17.48505 -16.53044 -16.12907 -15.91979 -15.66260 -15.22218 -14.70369 -14.52427 -14.36561 -14.27806 -14.09665 -13.81430 -13.56331 -13.51092 -13.09612 -12.91253 -12.69210 -12.66985 -12.60812 -12.45479 -11.97709 -11.74291 -11.69841 -11.54903 -11.51304 -11.47815 -11.22461 -10.92186 -10.89499 -10.47262 -10.39463 -10.23022 -10.12907 -9.61030 -9.41020 -9.34207 -9.00183 -8.91016 -7.24473 -5.78449 -3.13867 0.22507 0.88638 1.57621 2.09901 2.22045 2.80243 3.22465 3.35331 3.37901 3.43280 3.53084 3.81362 4.15091 4.25968 4.44824 4.52780 4.57377 4.60331 4.68249 4.75221 4.78384 4.84539 4.88232 4.99455 5.12965 5.25453 5.28343 5.31883 5.44007 5.45432 5.50237 5.52727 5.60968 5.67915 5.75272 5.81355 5.81814 5.95572 5.97234 6.02234 6.06503 6.12877 6.21520 6.22996 6.30626 6.73317 6.77418 6.85272 7.09444 7.81803 7.98173 8.40817 9.20170 9.92673 10.12773 11.40055 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011994 B = 0.001957 C = 0.001728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2333.937126 B =14304.589149 C =16195.526075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.142 3.858 3 H 0.090 0.910 4 C -0.127 4.127 5 C -0.114 4.114 6 C -0.130 4.130 7 C 0.157 3.843 8 N -0.758 5.758 9 C -0.244 4.244 10 H 0.089 0.911 11 C 0.002 3.998 12 N -0.935 5.935 13 Si 0.886 3.114 14 H -0.284 1.284 15 H -0.291 1.291 16 H -0.277 1.277 17 N -0.719 5.719 18 C 0.521 3.479 19 O -0.528 6.528 20 C -0.078 4.078 21 C 0.154 3.846 22 N -0.277 5.277 23 O -0.091 6.091 24 C 0.084 3.916 25 C -0.128 4.128 26 C -0.060 4.060 27 C -0.148 4.148 28 C -0.036 4.036 29 C -0.186 4.186 30 H 0.067 0.933 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.080 0.920 34 H 0.069 0.931 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.024 0.976 40 H 0.024 0.976 41 H 0.360 0.640 42 H 0.259 0.741 43 H 0.403 0.597 44 H 0.123 0.877 45 H 0.128 0.872 46 H 0.139 0.861 47 H 0.140 0.860 48 H 0.137 0.863 49 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.044 6.467 -23.967 29.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.038 3.962 3 H 0.108 0.892 4 C -0.165 4.165 5 C -0.152 4.152 6 C -0.168 4.168 7 C 0.029 3.971 8 N -0.404 5.404 9 C -0.374 4.374 10 H 0.107 0.893 11 C -0.194 4.194 12 N -0.583 5.583 13 Si 0.717 3.283 14 H -0.211 1.211 15 H -0.217 1.217 16 H -0.204 1.204 17 N -0.371 5.371 18 C 0.305 3.695 19 O -0.403 6.403 20 C -0.118 4.118 21 C -0.027 4.027 22 N -0.019 5.019 23 O -0.102 6.102 24 C 0.030 3.970 25 C -0.147 4.147 26 C -0.080 4.080 27 C -0.166 4.166 28 C -0.056 4.056 29 C -0.190 4.190 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.099 0.901 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.042 0.958 40 H 0.042 0.958 41 H 0.193 0.807 42 H 0.069 0.931 43 H 0.238 0.762 44 H 0.141 0.859 45 H 0.146 0.854 46 H 0.156 0.844 47 H 0.158 0.842 48 H 0.155 0.845 49 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -16.290 7.151 -24.489 30.269 hybrid contribution 0.071 -0.965 1.216 1.554 sum -16.219 6.186 -23.272 29.033 Atomic orbital electron populations 1.22182 0.95250 1.02173 1.02633 1.21073 0.93842 0.97766 0.83557 0.89189 1.21948 0.96850 1.00984 0.96743 1.21516 0.93946 1.01250 0.98514 1.21785 0.97315 1.00285 0.97416 1.20625 0.90733 0.95689 0.90004 1.42741 1.05262 1.66277 1.26103 1.19076 0.82254 1.29302 1.06790 0.89281 1.24697 0.95645 1.00778 0.98255 1.69699 1.11720 1.48251 1.28624 0.86516 0.80926 0.79777 0.81121 1.21086 1.21707 1.20371 1.46029 1.67391 1.14222 1.09461 1.20032 0.78101 0.87313 0.84089 1.90782 1.49146 1.15710 1.84708 1.20267 1.06283 0.96628 0.88671 1.23675 0.90417 0.94213 0.94428 1.79838 1.17219 1.03596 1.01277 1.89150 1.24377 1.50499 1.46125 1.20278 0.86223 0.95843 0.94647 1.20066 0.92476 0.99651 1.02543 1.21182 0.94580 0.97371 0.94824 1.20864 1.00707 0.97848 0.97211 1.20493 0.90499 0.96357 0.98216 1.20599 0.96887 1.02079 0.99392 0.91419 0.92233 0.92393 0.90138 0.91251 0.91927 0.91769 0.92097 0.92139 0.95769 0.95768 0.80732 0.93058 0.76226 0.85857 0.85402 0.84358 0.84178 0.84518 0.84762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.30 9.48 37.16 0.35 -0.95 16 2 C 0.14 1.18 2.57 -67.93 -0.17 1.00 16 3 H 0.09 0.94 7.58 -51.93 -0.39 0.54 16 4 C -0.13 -1.02 4.75 -26.73 -0.13 -1.15 16 5 C -0.11 -1.17 5.10 -26.73 -0.14 -1.31 16 6 C -0.13 -1.78 5.33 -26.73 -0.14 -1.93 16 7 C 0.16 2.92 6.26 -4.04 -0.03 2.90 16 8 N -0.76 -18.02 5.41 -59.91 -0.32 -18.34 16 9 C -0.24 -6.96 10.47 -15.06 -0.16 -7.11 16 10 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 11 C 0.00 0.06 5.50 -17.43 -0.10 -0.04 16 12 N -0.93 -29.38 13.97 55.49 0.78 -28.61 16 13 Si 0.89 22.00 27.74 -169.99 -4.71 17.29 16 14 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 15 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 16 H -0.28 -6.47 6.52 56.52 0.37 -6.10 16 17 N -0.72 -5.17 4.53 -53.81 -0.24 -5.41 16 18 C 0.52 4.87 7.79 -10.99 -0.09 4.78 16 19 O -0.53 -7.39 15.70 5.56 0.09 -7.31 16 20 C -0.08 -0.52 6.30 -29.03 -0.18 -0.70 16 21 C 0.15 1.63 5.95 -80.12 -0.48 1.15 16 22 N -0.28 -3.54 12.81 34.91 0.45 -3.10 16 23 O -0.09 -1.18 12.06 7.68 0.09 -1.09 16 24 C 0.08 0.93 7.48 -38.47 -0.29 0.64 16 25 C -0.13 -1.03 10.07 -39.47 -0.40 -1.43 16 26 C -0.06 -0.39 10.02 -39.54 -0.40 -0.78 16 27 C -0.15 -1.02 9.97 -39.96 -0.40 -1.42 16 28 C -0.04 -0.30 10.05 -39.63 -0.40 -0.69 16 29 C -0.19 -1.95 6.32 -105.17 -0.67 -2.61 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.60 7.75 -51.93 -0.40 0.19 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.36 8.29 5.53 -40.82 -0.23 8.07 16 42 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 43 H 0.40 1.83 8.60 -40.82 -0.35 1.48 16 44 H 0.12 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.13 0.47 8.14 -51.93 -0.42 0.04 16 46 H 0.14 0.81 8.06 -52.48 -0.42 0.38 16 47 H 0.14 0.48 8.06 -52.48 -0.42 0.05 16 48 H 0.14 0.65 8.06 -52.49 -0.42 0.22 16 49 H 0.13 0.85 8.06 -52.48 -0.42 0.43 16 LS Contribution 412.15 15.07 6.21 6.21 Total: -1.00 -37.50 412.15 -9.19 -46.69 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -7.73 Total: 3.32 kcal Atomic # 6 Polarization: -5.85 SS G_CDS: -3.80 Total: -9.65 kcal Atomic # 7 Polarization: -56.12 SS G_CDS: 0.65 Total: -55.46 kcal Atomic # 8 Polarization: -8.58 SS G_CDS: 0.18 Total: -8.40 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.71 Total: 17.29 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -37.50 -9.19 -46.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171715125.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.708 kcal (2) G-P(sol) polarization free energy of solvation -37.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.692 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds