Wall clock time and date at job start Wed Apr 1 2020 04:12:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46950 * 2 1 4 4 C 1.52994 * 109.47172 * 119.99915 * 2 1 3 5 5 C 1.53005 * 109.46891 * 185.00069 * 4 2 1 6 6 C 1.53004 * 109.46866 * 180.02562 * 5 4 2 7 7 C 1.53005 * 109.46866 * 180.02562 * 6 5 4 8 8 N 1.46500 * 109.46969 * 179.97438 * 7 6 5 9 9 C 1.36935 * 119.99902 * 179.97438 * 8 7 6 10 10 H 1.08001 * 120.00004 * 0.02562 * 9 8 7 11 11 C 1.38812 * 120.00127 * 179.97438 * 9 8 7 12 12 N 1.31616 * 120.00445 * 180.02562 * 11 9 8 13 13 Si 1.86805 * 119.99749 * 0.02562 * 11 9 8 14 14 H 1.48504 * 109.47100 * 89.99985 * 13 11 9 15 15 H 1.48497 * 109.47090 * 209.99644 * 13 11 9 16 16 H 1.48490 * 109.47227 * 329.99677 * 13 11 9 17 17 N 1.46502 * 109.47079 * 240.00144 * 2 1 3 18 18 C 1.34781 * 120.00244 * 84.99716 * 17 2 1 19 19 O 1.21281 * 119.99369 * 359.97438 * 18 17 2 20 20 C 1.50696 * 119.99803 * 179.97438 * 18 17 2 21 21 C 1.50705 * 109.46578 * 179.97438 * 20 18 17 22 22 N 1.29740 * 126.29138 * 269.99414 * 21 20 18 23 23 O 1.41361 * 109.74059 * 180.02562 * 22 21 20 24 24 C 1.34820 * 109.32695 * 0.02562 * 23 22 21 25 25 C 1.38983 * 133.44621 * 179.97438 * 24 23 22 26 26 C 1.37794 * 119.79420 * 180.02562 * 25 24 23 27 27 C 1.38785 * 120.59884 * 0.02562 * 26 25 24 28 28 C 1.36622 * 120.51766 * 359.97438 * 27 26 25 29 29 C 1.39679 * 119.79071 * 0.02562 * 28 27 26 30 30 H 1.08999 * 109.47570 * 299.99946 * 1 2 3 31 31 H 1.09000 * 109.47619 * 60.00528 * 1 2 3 32 32 H 1.09003 * 109.46950 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47322 * 304.99755 * 4 2 1 34 34 H 1.09005 * 109.47439 * 65.00315 * 4 2 1 35 35 H 1.08997 * 109.46881 * 299.99956 * 5 4 2 36 36 H 1.09001 * 109.47105 * 60.00351 * 5 4 2 37 37 H 1.08997 * 109.47316 * 299.99668 * 6 5 4 38 38 H 1.09001 * 109.46990 * 60.00258 * 6 5 4 39 39 H 1.08997 * 109.46881 * 299.99934 * 7 6 5 40 40 H 1.09001 * 109.47105 * 60.00329 * 7 6 5 41 41 H 0.97002 * 119.99744 * 0.02562 * 8 7 6 42 42 H 0.96994 * 120.00738 * 180.02562 * 12 11 9 43 43 H 0.96998 * 120.00055 * 264.99850 * 17 2 1 44 44 H 1.09002 * 109.47274 * 60.00609 * 20 18 17 45 45 H 1.08996 * 109.47109 * 299.99645 * 20 18 17 46 46 H 1.08003 * 120.10178 * 359.97438 * 25 24 23 47 47 H 1.08005 * 119.70221 * 179.97438 * 26 25 24 48 48 H 1.08001 * 119.74182 * 179.72896 * 27 26 25 49 49 H 1.08005 * 120.10555 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5649 -0.6132 1.3136 6 6 4.0749 -1.3350 2.5625 7 6 5.5998 -1.2264 2.6273 8 7 6.0881 -1.9170 3.8234 9 6 7.4302 -1.9533 4.0931 10 1 8.1286 -1.4725 3.4241 11 6 7.8929 -2.6072 5.2267 12 7 9.1828 -2.6417 5.4862 13 14 6.6848 -3.4382 6.3841 14 1 6.4802 -4.8462 5.9586 15 1 7.2264 -3.4127 7.7666 16 1 5.3877 -2.7165 6.3473 17 7 2.0183 -0.6906 -1.1962 18 6 2.1470 -0.0182 -2.3572 19 8 1.8581 1.1584 -2.4117 20 6 2.6499 -0.7286 -3.5875 21 6 2.6998 0.2397 -4.7413 22 7 1.7433 0.4796 -5.5844 23 8 2.1665 1.4473 -6.5239 24 6 3.4334 1.8149 -6.2459 25 6 4.3193 2.7107 -6.8327 26 6 5.5818 2.8708 -6.3042 27 6 5.9785 2.1446 -5.1901 28 6 5.1228 1.2590 -4.5984 29 6 3.8386 1.0818 -5.1184 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6055 -0.2617 2.1369 34 1 1.7517 -1.7715 1.2056 35 1 3.9994 -1.0727 0.4259 36 1 3.8532 0.4371 1.3573 37 1 3.6404 -0.8759 3.4505 38 1 3.7866 -2.3852 2.5184 39 1 6.0346 -1.6852 1.7393 40 1 5.8877 -0.1760 2.6716 41 1 5.4608 -2.3491 4.4240 42 1 9.5062 -3.0989 6.2782 43 1 2.2491 -1.6317 -1.1527 44 1 1.9777 -1.5509 -3.8326 45 1 3.6492 -1.1202 -3.3979 46 1 4.0194 3.2791 -7.7008 47 1 6.2691 3.5670 -6.7617 48 1 6.9728 2.2777 -4.7899 49 1 5.4386 0.6970 -3.7318 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171715125.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:05 Heat of formation + Delta-G solvation = -4.341963 kcal Electronic energy + Delta-G solvation = -28780.237291 eV Core-core repulsion = 24708.513707 eV Total energy + Delta-G solvation = -4071.723583 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.87245 -40.94477 -38.71875 -38.14283 -36.97355 -35.64230 -34.78160 -33.31149 -32.23104 -31.58755 -31.10433 -30.07050 -29.02749 -25.79198 -24.37435 -23.73850 -23.71786 -22.81933 -22.10137 -21.59788 -21.06945 -19.60113 -18.59204 -18.38102 -18.24365 -17.25347 -16.91117 -16.62796 -16.53457 -16.32422 -16.19544 -15.80373 -15.17697 -15.05804 -14.87960 -14.82250 -14.69974 -14.40649 -14.21497 -14.13740 -13.69802 -13.35449 -13.29942 -13.14813 -13.06111 -12.95012 -12.91480 -12.44406 -12.41485 -12.29965 -12.27491 -12.09717 -12.03632 -11.86635 -11.76916 -11.48005 -11.41648 -11.00247 -10.95359 -10.11549 -9.99520 -9.65284 -9.29028 -8.02593 -5.36438 -0.43497 0.24668 0.88691 1.37065 1.38772 1.43139 1.50760 1.52844 2.17875 2.49427 2.61876 2.90602 3.14970 3.28575 3.50586 3.53790 3.70719 3.92465 4.00940 4.04332 4.08634 4.11740 4.20108 4.27806 4.33255 4.35814 4.40857 4.45542 4.59766 4.65933 4.74846 4.78879 4.89454 4.90190 4.93233 5.00165 5.04937 5.07264 5.14028 5.26374 5.27419 5.32307 5.38639 5.45090 5.53936 5.58759 5.66587 5.75909 6.11784 6.21865 6.50562 7.08801 7.19679 7.85675 8.04993 9.18960 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011994 B = 0.001957 C = 0.001728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2333.937126 B =14304.589149 C =16195.526075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.144 3.856 3 H 0.065 0.935 4 C -0.116 4.116 5 C -0.107 4.107 6 C -0.117 4.117 7 C 0.149 3.851 8 N -0.762 5.762 9 C -0.239 4.239 10 H 0.053 0.947 11 C -0.069 4.069 12 N -0.985 5.985 13 Si 0.961 3.039 14 H -0.275 1.275 15 H -0.297 1.297 16 H -0.250 1.250 17 N -0.704 5.704 18 C 0.521 3.479 19 O -0.582 6.582 20 C -0.074 4.074 21 C 0.156 3.844 22 N -0.315 5.315 23 O -0.121 6.121 24 C 0.051 3.949 25 C -0.138 4.138 26 C -0.051 4.051 27 C -0.149 4.149 28 C -0.045 4.045 29 C -0.209 4.209 30 H 0.074 0.926 31 H 0.035 0.965 32 H 0.073 0.927 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.073 0.927 36 H 0.053 0.947 37 H 0.061 0.939 38 H 0.073 0.927 39 H 0.025 0.975 40 H 0.014 0.986 41 H 0.367 0.633 42 H 0.258 0.742 43 H 0.420 0.580 44 H 0.150 0.850 45 H 0.164 0.836 46 H 0.155 0.845 47 H 0.176 0.824 48 H 0.164 0.836 49 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.924 5.262 -23.495 28.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.040 3.960 3 H 0.083 0.917 4 C -0.153 4.153 5 C -0.146 4.146 6 C -0.155 4.155 7 C 0.024 3.976 8 N -0.408 5.408 9 C -0.370 4.370 10 H 0.072 0.928 11 C -0.260 4.260 12 N -0.636 5.636 13 Si 0.787 3.213 14 H -0.200 1.200 15 H -0.224 1.224 16 H -0.174 1.174 17 N -0.357 5.357 18 C 0.306 3.694 19 O -0.461 6.461 20 C -0.114 4.114 21 C -0.025 4.025 22 N -0.060 5.060 23 O -0.131 6.131 24 C -0.002 4.002 25 C -0.158 4.158 26 C -0.070 4.070 27 C -0.167 4.167 28 C -0.065 4.065 29 C -0.212 4.212 30 H 0.093 0.907 31 H 0.055 0.945 32 H 0.092 0.908 33 H 0.103 0.897 34 H 0.108 0.892 35 H 0.092 0.908 36 H 0.071 0.929 37 H 0.079 0.921 38 H 0.091 0.909 39 H 0.043 0.957 40 H 0.032 0.968 41 H 0.200 0.800 42 H 0.067 0.933 43 H 0.258 0.742 44 H 0.168 0.832 45 H 0.182 0.818 46 H 0.172 0.828 47 H 0.193 0.807 48 H 0.181 0.819 49 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -17.200 5.935 -24.051 30.159 hybrid contribution 0.489 -0.488 1.004 1.219 sum -16.712 5.447 -23.047 28.985 Atomic orbital electron populations 1.22129 0.94781 1.02944 1.01878 1.20960 0.94129 0.96784 0.84123 0.91662 1.21841 0.94833 1.02178 0.96482 1.21444 0.95617 1.00214 0.97286 1.21674 0.93179 1.01587 0.99066 1.20866 0.94409 0.94361 0.88002 1.42782 1.03460 1.66737 1.27780 1.19066 0.84061 1.27932 1.05904 0.92850 1.25612 0.97681 1.02241 1.00504 1.69893 1.14259 1.49915 1.29495 0.85325 0.79246 0.78955 0.77751 1.20047 1.22352 1.17429 1.45918 1.66329 1.14899 1.08558 1.20418 0.77227 0.86692 0.85047 1.90769 1.51634 1.18168 1.85562 1.20492 1.08908 0.95992 0.86022 1.24284 0.89871 0.93932 0.94390 1.79752 1.18726 1.04930 1.02582 1.89063 1.25721 1.51278 1.46993 1.20827 0.86063 0.97348 0.95928 1.20472 0.92793 0.99321 1.03201 1.21653 0.94146 0.96990 0.94198 1.21300 1.01554 0.96854 0.96944 1.20824 0.89825 0.96990 0.98864 1.20889 0.97899 1.02639 0.99790 0.90694 0.94538 0.90775 0.89681 0.89190 0.90850 0.92852 0.92063 0.90872 0.95655 0.96766 0.80000 0.93307 0.74231 0.83246 0.81823 0.82758 0.80666 0.81882 0.82977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.26 9.48 71.98 0.68 -1.58 16 2 C 0.14 2.13 2.57 44.99 0.12 2.25 16 3 H 0.07 1.33 7.58 -2.39 -0.02 1.31 16 4 C -0.12 -1.45 4.75 30.59 0.15 -1.31 16 5 C -0.11 -1.89 5.10 30.60 0.16 -1.73 16 6 C -0.12 -2.83 5.33 30.60 0.16 -2.67 16 7 C 0.15 5.33 6.26 86.38 0.54 5.87 16 8 N -0.76 -34.96 5.41 -343.45 -1.86 -36.82 16 9 C -0.24 -13.64 10.47 84.03 0.88 -12.76 16 10 H 0.05 3.35 8.06 -2.91 -0.02 3.33 16 11 C -0.07 -4.07 5.50 84.86 0.47 -3.60 16 12 N -0.99 -63.04 13.97 21.65 0.30 -62.74 16 13 Si 0.96 44.62 27.74 68.60 1.90 46.52 16 14 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 15 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 16 H -0.25 -10.34 6.52 99.48 0.65 -9.70 16 17 N -0.70 -8.52 4.53 -442.53 -2.00 -10.53 16 18 C 0.52 9.22 7.79 87.65 0.68 9.90 16 19 O -0.58 -16.69 15.70 -3.03 -0.05 -16.74 16 20 C -0.07 -0.88 6.30 29.10 0.18 -0.69 16 21 C 0.16 3.35 5.95 45.04 0.27 3.62 16 22 N -0.32 -8.57 12.81 -43.47 -0.56 -9.12 16 23 O -0.12 -3.44 12.06 29.86 0.36 -3.08 16 24 C 0.05 1.19 7.48 22.99 0.17 1.37 16 25 C -0.14 -2.20 10.07 22.34 0.23 -1.98 16 26 C -0.05 -0.55 10.02 22.30 0.22 -0.33 16 27 C -0.15 -1.74 9.97 22.02 0.22 -1.52 16 28 C -0.05 -0.70 10.05 22.24 0.22 -0.47 16 29 C -0.21 -4.42 6.32 -20.22 -0.13 -4.55 16 30 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.09 0.83 8.14 -2.38 -0.02 0.81 16 35 H 0.07 1.14 7.75 -2.39 -0.02 1.12 16 36 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 41 H 0.37 15.77 5.53 -92.71 -0.51 15.26 16 42 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 43 H 0.42 2.28 8.60 -92.71 -0.80 1.48 16 44 H 0.15 0.97 8.14 -2.39 -0.02 0.95 16 45 H 0.16 0.69 8.14 -2.39 -0.02 0.67 16 46 H 0.15 1.76 8.06 -2.91 -0.02 1.74 16 47 H 0.18 0.60 8.06 -2.91 -0.02 0.57 16 48 H 0.16 1.01 8.06 -2.91 -0.02 0.99 16 49 H 0.15 1.64 8.06 -2.91 -0.02 1.62 16 Total: -1.00 -86.42 412.15 2.91 -83.51 By element: Atomic # 1 Polarization: 19.60 SS G_CDS: -0.41 Total: 19.19 kcal Atomic # 6 Polarization: -15.41 SS G_CDS: 5.22 Total: -10.19 kcal Atomic # 7 Polarization: -115.10 SS G_CDS: -4.12 Total: -119.21 kcal Atomic # 8 Polarization: -20.13 SS G_CDS: 0.31 Total: -19.82 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 1.90 Total: 46.52 kcal Total: -86.42 2.91 -83.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171715125.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.168 kcal (2) G-P(sol) polarization free energy of solvation -86.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds