Wall clock time and date at job start Wed Apr 1 2020 04:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 O 1.42900 * 109.47059 * 149.21770 * 3 2 1 5 5 C 1.35429 * 117.00112 * 179.97438 * 4 3 2 6 6 N 1.32234 * 119.79971 * 359.97438 * 5 4 3 7 7 C 1.31876 * 121.80128 * 180.02562 * 6 5 4 8 8 C 1.38356 * 121.18729 * 359.97438 * 7 6 5 9 9 C 1.38343 * 119.45522 * 359.74124 * 8 7 6 10 10 C 1.39992 * 118.34674 * 0.50298 * 9 8 7 11 11 C 1.47531 * 120.59398 * 179.78206 * 10 9 8 12 12 O 1.21591 * 119.99801 * 179.71576 * 11 10 9 13 13 N 1.34773 * 120.00037 * 359.71567 * 11 10 9 14 14 C 1.46500 * 119.99910 * 180.02562 * 13 11 10 15 15 H 1.08993 * 109.47452 * 324.99846 * 14 13 11 16 16 C 1.53006 * 109.46998 * 84.99768 * 14 13 11 17 17 C 1.52997 * 109.47007 * 204.99627 * 14 13 11 18 18 C 1.53001 * 109.47328 * 65.00131 * 17 14 13 19 19 C 1.52997 * 109.47328 * 179.97438 * 18 17 14 20 20 C 1.53000 * 109.46822 * 179.97438 * 19 18 17 21 21 N 1.46507 * 109.46942 * 180.02562 * 20 19 18 22 22 C 1.36928 * 120.00092 * 180.02562 * 21 20 19 23 23 H 1.08007 * 120.00077 * 359.97438 * 22 21 20 24 24 C 1.38814 * 120.00139 * 179.97438 * 22 21 20 25 25 N 1.31617 * 120.00195 * 179.97438 * 24 22 21 26 26 Si 1.86797 * 119.99882 * 359.97438 * 24 22 21 27 27 H 1.48507 * 109.46974 * 90.00350 * 26 24 22 28 28 H 1.48492 * 109.47469 * 210.00081 * 26 24 22 29 29 H 1.48503 * 109.47345 * 330.00555 * 26 24 22 30 30 H 4.38445 * 5.44483 * 180.02562 * 4 1 2 31 31 H 1.08993 * 109.47879 * 29.21099 * 3 2 1 32 32 H 1.09006 * 109.46931 * 269.20956 * 3 2 1 33 33 H 1.07998 * 119.40942 * 179.97438 * 7 6 5 34 34 H 1.08001 * 120.27594 * 179.97438 * 8 7 6 35 35 H 1.08002 * 120.82444 * 180.25186 * 9 8 7 36 36 H 0.97003 * 120.00095 * 359.97438 * 13 11 10 37 37 H 1.09001 * 109.46801 * 60.00058 * 16 14 13 38 38 H 1.09001 * 109.46998 * 179.97438 * 16 14 13 39 39 H 1.09000 * 109.47050 * 299.99945 * 16 14 13 40 40 H 1.09002 * 109.47196 * 184.99891 * 17 14 13 41 41 H 1.09001 * 109.47630 * 304.99986 * 17 14 13 42 42 H 1.09002 * 109.46786 * 300.00010 * 18 17 14 43 43 H 1.09001 * 109.46883 * 59.99398 * 18 17 14 44 44 H 1.09002 * 109.47196 * 299.99760 * 19 18 17 45 45 H 1.08998 * 109.46963 * 60.00165 * 19 18 17 46 46 H 1.08992 * 109.47381 * 299.99402 * 20 19 18 47 47 H 1.08998 * 109.47082 * 60.00403 * 20 19 18 48 48 H 0.97002 * 119.99509 * 359.97438 * 21 20 19 49 49 H 0.96996 * 120.00655 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1218 1.1583 -0.6895 5 6 4.4643 1.3117 -0.7799 6 7 5.2666 0.4092 -0.2409 7 6 6.5792 0.5195 -0.3050 8 6 7.1778 1.5910 -0.9436 9 6 6.3861 2.5620 -1.5304 10 6 4.9954 2.4267 -1.4451 11 6 4.1043 3.4356 -2.0490 12 8 2.8979 3.3046 -1.9729 13 7 4.6276 4.5024 -2.6850 14 6 3.7427 5.5046 -3.2842 15 1 2.8531 5.0141 -3.6790 16 6 3.3329 6.5246 -2.2199 17 6 4.4774 6.2197 -4.4198 18 6 4.7773 5.2226 -5.5409 19 6 5.5113 5.9378 -6.6768 20 6 5.8117 4.9405 -7.7975 21 7 6.5152 5.6252 -8.8850 22 6 6.8892 4.9295 -10.0035 23 1 6.6659 3.8758 -10.0839 24 6 7.5552 5.5784 -11.0342 25 7 7.9151 4.9096 -12.1091 26 14 7.9407 7.4009 -10.8954 27 1 9.2702 7.5785 -10.2579 28 1 7.9566 8.0081 -12.2505 29 1 6.9021 8.0651 -10.0675 30 1 -1.0502 -0.0002 0.0003 31 1 3.0098 -0.8960 -0.5015 32 1 3.0093 0.0150 1.0276 33 1 7.1980 -0.2402 0.1491 34 1 8.2543 1.6669 -0.9870 35 1 6.8300 3.4056 -2.0381 36 1 5.5901 4.6071 -2.7454 37 1 4.2227 7.0150 -1.8250 38 1 2.6749 7.2705 -2.6658 39 1 2.8096 6.0151 -1.4108 40 1 3.8523 7.0244 -4.8070 41 1 5.4122 6.6349 -4.0433 42 1 5.4024 4.4179 -5.1537 43 1 3.8425 4.8073 -5.9174 44 1 4.8859 6.7423 -7.0638 45 1 6.4461 6.3533 -6.3004 46 1 6.4374 4.1364 -7.4103 47 1 4.8772 4.5246 -8.1739 48 1 6.7154 6.5716 -8.8129 49 1 8.3802 5.3631 -12.8294 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176224748.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:55 Heat of formation + Delta-G solvation = 23.198237 kcal Electronic energy + Delta-G solvation = -28876.482499 eV Core-core repulsion = 24805.953148 eV Total energy + Delta-G solvation = -4070.529350 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.34297 -39.63829 -38.46976 -36.98523 -35.41318 -33.80625 -33.65225 -32.98684 -31.53238 -31.04135 -30.35600 -27.83111 -27.76483 -25.23281 -24.19728 -23.50644 -22.08315 -21.25184 -20.91177 -20.69901 -19.07820 -18.86966 -17.92815 -17.48213 -17.26489 -16.68841 -16.27797 -15.56383 -15.20665 -15.13817 -14.86230 -14.69244 -14.60134 -14.16865 -14.01953 -13.59151 -13.54755 -13.32830 -13.24648 -13.03056 -12.71111 -12.67562 -12.40203 -12.18331 -11.91590 -11.65829 -11.45923 -11.16961 -11.08140 -10.87699 -10.84929 -10.52726 -10.44633 -10.43370 -10.40146 -10.33494 -10.09836 -9.87770 -9.57856 -9.27429 -8.95003 -8.87966 -7.21191 -5.75515 -3.10715 0.24694 0.77296 1.85683 2.43757 2.63402 2.85715 3.12117 3.37468 3.40068 3.43441 3.45202 3.77873 3.98533 4.26154 4.32668 4.47406 4.55187 4.60006 4.71634 4.84068 4.92302 4.94255 4.96743 4.99349 5.20273 5.32154 5.32699 5.36873 5.49231 5.50333 5.55238 5.57989 5.58251 5.66788 5.82369 5.85632 5.87706 6.04466 6.07258 6.15119 6.18653 6.34835 6.37380 6.77752 6.78493 6.82229 7.18578 7.20872 7.34235 8.01534 8.04986 8.43784 9.23268 9.95724 10.16133 11.43058 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012324 B = 0.001936 C = 0.001866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2271.460767 B =14457.278465 C =14999.975628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.200 4.200 3 C 0.179 3.821 4 O -0.264 6.264 5 C 0.374 3.626 6 N -0.547 5.547 7 C 0.168 3.832 8 C -0.217 4.217 9 C -0.006 4.006 10 C -0.207 4.207 11 C 0.564 3.436 12 O -0.514 6.514 13 N -0.721 5.721 14 C 0.143 3.857 15 H 0.091 0.909 16 C -0.163 4.163 17 C -0.127 4.127 18 C -0.115 4.115 19 C -0.129 4.129 20 C 0.156 3.844 21 N -0.758 5.758 22 C -0.243 4.243 23 H 0.089 0.911 24 C 0.001 3.999 25 N -0.935 5.935 26 Si 0.886 3.114 27 H -0.284 1.284 28 H -0.291 1.291 29 H -0.277 1.277 30 H 0.224 0.776 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.167 0.833 34 H 0.147 0.853 35 H 0.146 0.854 36 H 0.397 0.603 37 H 0.055 0.945 38 H 0.066 0.934 39 H 0.059 0.941 40 H 0.080 0.920 41 H 0.067 0.933 42 H 0.061 0.939 43 H 0.064 0.936 44 H 0.060 0.940 45 H 0.059 0.941 46 H 0.024 0.976 47 H 0.025 0.975 48 H 0.360 0.640 49 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.558 -5.427 31.969 33.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.200 4.200 3 C 0.105 3.895 4 O -0.169 6.169 5 C 0.194 3.806 6 N -0.271 5.271 7 C 0.011 3.989 8 C -0.237 4.237 9 C -0.032 4.032 10 C -0.213 4.213 11 C 0.350 3.650 12 O -0.390 6.390 13 N -0.374 5.374 14 C 0.039 3.961 15 H 0.109 0.891 16 C -0.221 4.221 17 C -0.165 4.165 18 C -0.153 4.153 19 C -0.167 4.167 20 C 0.029 3.971 21 N -0.404 5.404 22 C -0.373 4.373 23 H 0.107 0.893 24 C -0.194 4.194 25 N -0.583 5.583 26 Si 0.717 3.283 27 H -0.211 1.211 28 H -0.217 1.217 29 H -0.204 1.204 30 H 0.241 0.759 31 H 0.110 0.890 32 H 0.109 0.891 33 H 0.184 0.816 34 H 0.164 0.836 35 H 0.164 0.836 36 H 0.232 0.768 37 H 0.075 0.925 38 H 0.085 0.915 39 H 0.078 0.922 40 H 0.099 0.901 41 H 0.086 0.914 42 H 0.080 0.920 43 H 0.083 0.917 44 H 0.079 0.921 45 H 0.078 0.922 46 H 0.042 0.958 47 H 0.043 0.957 48 H 0.193 0.807 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -8.056 -6.252 32.173 33.751 hybrid contribution 1.209 1.820 -0.444 2.230 sum -6.847 -4.432 31.729 32.760 Atomic orbital electron populations 1.25004 0.95848 0.97347 0.99267 1.22275 0.93572 1.02534 1.01651 1.19146 0.84465 0.87877 0.98010 1.86561 1.15991 1.43535 1.70823 1.19740 0.84134 0.88448 0.88250 1.67487 1.06809 1.29104 1.23726 1.22697 0.89012 0.95545 0.91651 1.21985 1.02005 0.96591 1.03149 1.21689 0.91069 0.97705 0.92763 1.20041 0.94290 0.98276 1.08742 1.17748 0.87783 0.80972 0.78518 1.90855 1.14132 1.76035 1.57938 1.45971 1.10261 1.23808 1.57335 1.21039 0.93878 0.88431 0.92763 0.89139 1.22180 1.01577 0.98929 0.99447 1.21944 1.00847 0.98799 0.94897 1.21518 1.00928 0.97910 0.94936 1.21778 0.99998 0.99153 0.95792 1.20631 0.95150 0.93842 0.87487 1.42739 1.70339 1.08567 1.18715 1.19089 1.30057 0.94998 0.93195 0.89287 1.24696 1.00764 0.97574 0.96388 1.69704 1.45390 1.35305 1.07948 0.86509 0.78203 0.86762 0.76836 1.21108 1.21725 1.20364 0.75886 0.88982 0.89085 0.81599 0.83560 0.83601 0.76803 0.92543 0.91496 0.92180 0.90149 0.91383 0.91980 0.91725 0.92087 0.92188 0.95757 0.95733 0.80746 0.93089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.39 19.25 29.55 0.57 -0.82 16 2 C -0.20 -2.12 13.73 -37.13 -0.51 -2.63 16 3 C 0.18 1.77 5.78 34.37 0.20 1.96 16 4 O -0.26 -3.39 8.17 -39.75 -0.32 -3.72 16 5 C 0.37 4.22 7.51 -16.61 -0.12 4.09 16 6 N -0.55 -5.06 9.21 -12.98 -0.12 -5.18 16 7 C 0.17 1.06 11.17 -17.49 -0.20 0.86 16 8 C -0.22 -1.20 10.09 -39.50 -0.40 -1.59 16 9 C -0.01 -0.04 9.64 -38.89 -0.37 -0.42 16 10 C -0.21 -2.13 5.90 -104.69 -0.62 -2.75 16 11 C 0.56 6.75 7.74 -12.47 -0.10 6.65 16 12 O -0.51 -8.14 14.85 -16.48 -0.24 -8.38 16 13 N -0.72 -6.61 4.48 -54.85 -0.25 -6.85 16 14 C 0.14 1.36 2.57 -67.93 -0.17 1.18 16 15 H 0.09 1.05 7.58 -51.93 -0.39 0.66 16 16 C -0.16 -1.40 9.48 37.16 0.35 -1.05 16 17 C -0.13 -1.14 4.75 -26.73 -0.13 -1.26 16 18 C -0.11 -1.32 5.10 -26.73 -0.14 -1.45 16 19 C -0.13 -1.88 5.33 -26.73 -0.14 -2.02 16 20 C 0.16 3.05 6.26 -4.04 -0.03 3.02 16 21 N -0.76 -18.48 5.41 -59.91 -0.32 -18.80 16 22 C -0.24 -7.08 10.47 -15.06 -0.16 -7.23 16 23 H 0.09 2.77 8.06 -52.48 -0.42 2.35 16 24 C 0.00 0.04 5.50 -17.43 -0.10 -0.06 16 25 N -0.94 -29.79 13.97 55.49 0.78 -29.02 16 26 Si 0.89 22.31 27.74 -169.99 -4.71 17.60 16 27 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 28 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 29 H -0.28 -6.56 6.52 56.52 0.37 -6.19 16 30 H 0.22 1.08 7.80 -54.08 -0.42 0.66 16 31 H 0.09 0.79 8.10 -51.93 -0.42 0.37 16 32 H 0.09 0.75 8.10 -51.93 -0.42 0.33 16 33 H 0.17 0.49 8.06 -52.49 -0.42 0.07 16 34 H 0.15 0.41 8.06 -52.49 -0.42 -0.01 16 35 H 0.15 0.60 6.52 -52.49 -0.34 0.26 16 36 H 0.40 2.63 6.70 -40.82 -0.27 2.35 16 37 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.06 0.69 7.75 -51.93 -0.40 0.29 16 43 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 45 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 46 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 48 H 0.36 8.47 5.53 -40.82 -0.23 8.25 16 49 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 LS Contribution 416.84 15.07 6.28 6.28 Total: -1.00 -37.77 416.84 -8.54 -46.31 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -7.57 Total: 5.28 kcal Atomic # 6 Polarization: -1.45 SS G_CDS: -2.06 Total: -3.51 kcal Atomic # 7 Polarization: -59.94 SS G_CDS: 0.09 Total: -59.85 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: -0.57 Total: -12.10 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -4.71 Total: 17.60 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -37.77 -8.54 -46.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176224748.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.505 kcal (2) G-P(sol) polarization free energy of solvation -37.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds