Wall clock time and date at job start Wed Apr 1 2020 04:11:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 O 1.42900 * 109.47059 * 149.21770 * 3 2 1 5 5 C 1.35429 * 117.00112 * 179.97438 * 4 3 2 6 6 N 1.32234 * 119.79971 * 359.97438 * 5 4 3 7 7 C 1.31876 * 121.80128 * 180.02562 * 6 5 4 8 8 C 1.38356 * 121.18729 * 359.97438 * 7 6 5 9 9 C 1.38343 * 119.45522 * 359.74124 * 8 7 6 10 10 C 1.39992 * 118.34674 * 0.50298 * 9 8 7 11 11 C 1.47531 * 120.59398 * 179.78206 * 10 9 8 12 12 O 1.21591 * 119.99801 * 179.71576 * 11 10 9 13 13 N 1.34773 * 120.00037 * 359.71567 * 11 10 9 14 14 C 1.46500 * 119.99910 * 180.02562 * 13 11 10 15 15 H 1.08993 * 109.47452 * 324.99846 * 14 13 11 16 16 C 1.53006 * 109.46998 * 84.99768 * 14 13 11 17 17 C 1.52997 * 109.47007 * 204.99627 * 14 13 11 18 18 C 1.53001 * 109.47328 * 65.00131 * 17 14 13 19 19 C 1.52997 * 109.47328 * 179.97438 * 18 17 14 20 20 C 1.53000 * 109.46822 * 179.97438 * 19 18 17 21 21 N 1.46507 * 109.46942 * 180.02562 * 20 19 18 22 22 C 1.36928 * 120.00092 * 180.02562 * 21 20 19 23 23 H 1.08007 * 120.00077 * 359.97438 * 22 21 20 24 24 C 1.38814 * 120.00139 * 179.97438 * 22 21 20 25 25 N 1.31617 * 120.00195 * 179.97438 * 24 22 21 26 26 Si 1.86797 * 119.99882 * 359.97438 * 24 22 21 27 27 H 1.48507 * 109.46974 * 90.00350 * 26 24 22 28 28 H 1.48492 * 109.47469 * 210.00081 * 26 24 22 29 29 H 1.48503 * 109.47345 * 330.00555 * 26 24 22 30 30 H 4.38445 * 5.44483 * 180.02562 * 4 1 2 31 31 H 1.08993 * 109.47879 * 29.21099 * 3 2 1 32 32 H 1.09006 * 109.46931 * 269.20956 * 3 2 1 33 33 H 1.07998 * 119.40942 * 179.97438 * 7 6 5 34 34 H 1.08001 * 120.27594 * 179.97438 * 8 7 6 35 35 H 1.08002 * 120.82444 * 180.25186 * 9 8 7 36 36 H 0.97003 * 120.00095 * 359.97438 * 13 11 10 37 37 H 1.09001 * 109.46801 * 60.00058 * 16 14 13 38 38 H 1.09001 * 109.46998 * 179.97438 * 16 14 13 39 39 H 1.09000 * 109.47050 * 299.99945 * 16 14 13 40 40 H 1.09002 * 109.47196 * 184.99891 * 17 14 13 41 41 H 1.09001 * 109.47630 * 304.99986 * 17 14 13 42 42 H 1.09002 * 109.46786 * 300.00010 * 18 17 14 43 43 H 1.09001 * 109.46883 * 59.99398 * 18 17 14 44 44 H 1.09002 * 109.47196 * 299.99760 * 19 18 17 45 45 H 1.08998 * 109.46963 * 60.00165 * 19 18 17 46 46 H 1.08992 * 109.47381 * 299.99402 * 20 19 18 47 47 H 1.08998 * 109.47082 * 60.00403 * 20 19 18 48 48 H 0.97002 * 119.99509 * 359.97438 * 21 20 19 49 49 H 0.96996 * 120.00655 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1218 1.1583 -0.6895 5 6 4.4643 1.3117 -0.7799 6 7 5.2666 0.4092 -0.2409 7 6 6.5792 0.5195 -0.3050 8 6 7.1778 1.5910 -0.9436 9 6 6.3861 2.5620 -1.5304 10 6 4.9954 2.4267 -1.4451 11 6 4.1043 3.4356 -2.0490 12 8 2.8979 3.3046 -1.9729 13 7 4.6276 4.5024 -2.6850 14 6 3.7427 5.5046 -3.2842 15 1 2.8531 5.0141 -3.6790 16 6 3.3329 6.5246 -2.2199 17 6 4.4774 6.2197 -4.4198 18 6 4.7773 5.2226 -5.5409 19 6 5.5113 5.9378 -6.6768 20 6 5.8117 4.9405 -7.7975 21 7 6.5152 5.6252 -8.8850 22 6 6.8892 4.9295 -10.0035 23 1 6.6659 3.8758 -10.0839 24 6 7.5552 5.5784 -11.0342 25 7 7.9151 4.9096 -12.1091 26 14 7.9407 7.4009 -10.8954 27 1 9.2702 7.5785 -10.2579 28 1 7.9566 8.0081 -12.2505 29 1 6.9021 8.0651 -10.0675 30 1 -1.0502 -0.0002 0.0003 31 1 3.0098 -0.8960 -0.5015 32 1 3.0093 0.0150 1.0276 33 1 7.1980 -0.2402 0.1491 34 1 8.2543 1.6669 -0.9870 35 1 6.8300 3.4056 -2.0381 36 1 5.5901 4.6071 -2.7454 37 1 4.2227 7.0150 -1.8250 38 1 2.6749 7.2705 -2.6658 39 1 2.8096 6.0151 -1.4108 40 1 3.8523 7.0244 -4.8070 41 1 5.4122 6.6349 -4.0433 42 1 5.4024 4.4179 -5.1537 43 1 3.8425 4.8073 -5.9174 44 1 4.8859 6.7423 -7.0638 45 1 6.4461 6.3533 -6.3004 46 1 6.4374 4.1364 -7.4103 47 1 4.8772 4.5246 -8.1739 48 1 6.7154 6.5716 -8.8129 49 1 8.3802 5.3631 -12.8294 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001176224748.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:54 Heat of formation + Delta-G solvation = -3.035512 kcal Electronic energy + Delta-G solvation = -28877.620079 eV Core-core repulsion = 24805.953148 eV Total energy + Delta-G solvation = -4071.666931 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.01705 -40.46035 -39.15090 -38.04401 -36.91384 -34.86063 -34.48766 -34.06069 -33.01688 -31.95439 -31.27473 -29.05082 -28.52685 -26.03713 -25.55950 -24.18697 -23.49517 -22.35445 -22.04662 -21.55072 -19.76076 -19.63881 -19.51996 -18.61577 -17.94777 -17.43118 -17.05813 -16.63336 -16.27520 -16.07934 -15.97083 -15.83503 -15.52466 -15.42620 -14.89112 -14.75769 -14.58013 -14.29141 -14.22395 -14.09414 -13.90030 -13.52935 -13.30256 -13.06653 -12.95736 -12.92168 -12.88194 -12.45177 -12.29784 -12.04735 -11.88465 -11.81750 -11.78035 -11.50036 -11.43972 -11.23655 -11.17702 -11.05503 -10.97114 -10.62219 -10.10450 -9.58306 -9.31250 -8.03901 -5.38297 -0.36399 0.20788 1.15369 1.37945 1.42869 1.50548 1.69916 1.87109 2.11453 2.43926 2.48565 2.78542 3.20807 3.26885 3.35541 3.48511 3.69902 3.79245 3.92970 3.97327 4.03533 4.08765 4.15319 4.25654 4.30387 4.34624 4.39620 4.49762 4.58731 4.64652 4.76205 4.84206 4.88155 4.90846 4.92308 4.98522 5.02909 5.07517 5.13194 5.25844 5.32423 5.38542 5.43656 5.51131 5.59671 5.73735 6.10808 6.20285 6.47475 6.52779 6.70976 7.07005 7.25301 7.83033 8.03910 9.17733 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012324 B = 0.001936 C = 0.001866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2271.460767 B =14457.278465 C =14999.975628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.250 4.250 3 C 0.179 3.821 4 O -0.296 6.296 5 C 0.348 3.652 6 N -0.561 5.561 7 C 0.163 3.837 8 C -0.204 4.204 9 C -0.003 4.003 10 C -0.233 4.233 11 C 0.560 3.440 12 O -0.565 6.565 13 N -0.707 5.707 14 C 0.144 3.856 15 H 0.063 0.937 16 C -0.156 4.156 17 C -0.114 4.114 18 C -0.109 4.109 19 C -0.115 4.115 20 C 0.149 3.851 21 N -0.760 5.760 22 C -0.242 4.242 23 H 0.050 0.950 24 C -0.069 4.069 25 N -0.985 5.985 26 Si 0.963 3.037 27 H -0.273 1.273 28 H -0.296 1.296 29 H -0.249 1.249 30 H 0.259 0.741 31 H 0.096 0.904 32 H 0.100 0.900 33 H 0.202 0.798 34 H 0.184 0.816 35 H 0.175 0.825 36 H 0.412 0.588 37 H 0.074 0.926 38 H 0.077 0.923 39 H 0.036 0.964 40 H 0.089 0.911 41 H 0.091 0.909 42 H 0.065 0.935 43 H 0.050 0.950 44 H 0.064 0.936 45 H 0.075 0.925 46 H 0.022 0.978 47 H 0.012 0.988 48 H 0.368 0.632 49 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.768 -3.214 33.805 34.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.250 4.250 3 C 0.105 3.895 4 O -0.202 6.202 5 C 0.168 3.832 6 N -0.285 5.285 7 C 0.007 3.993 8 C -0.224 4.224 9 C -0.028 4.028 10 C -0.239 4.239 11 C 0.347 3.653 12 O -0.445 6.445 13 N -0.360 5.360 14 C 0.040 3.960 15 H 0.081 0.919 16 C -0.215 4.215 17 C -0.152 4.152 18 C -0.147 4.147 19 C -0.153 4.153 20 C 0.023 3.977 21 N -0.406 5.406 22 C -0.373 4.373 23 H 0.068 0.932 24 C -0.260 4.260 25 N -0.635 5.635 26 Si 0.790 3.210 27 H -0.199 1.199 28 H -0.222 1.222 29 H -0.174 1.174 30 H 0.275 0.725 31 H 0.114 0.886 32 H 0.117 0.883 33 H 0.218 0.782 34 H 0.201 0.799 35 H 0.193 0.807 36 H 0.250 0.750 37 H 0.093 0.907 38 H 0.096 0.904 39 H 0.055 0.945 40 H 0.108 0.892 41 H 0.110 0.890 42 H 0.084 0.916 43 H 0.069 0.931 44 H 0.083 0.917 45 H 0.094 0.906 46 H 0.040 0.960 47 H 0.030 0.970 48 H 0.201 0.799 49 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -6.249 -4.027 34.054 34.856 hybrid contribution 0.678 0.970 -1.005 1.552 sum -5.571 -3.057 33.049 33.655 Atomic orbital electron populations 1.25931 0.96771 0.95632 0.97582 1.22863 0.94611 1.04190 1.03308 1.19217 0.84467 0.87453 0.98326 1.86511 1.17450 1.44624 1.71590 1.20013 0.83894 0.89604 0.89648 1.67520 1.08111 1.28882 1.23992 1.23439 0.88239 0.96602 0.90992 1.22430 1.03655 0.95198 1.01116 1.22072 0.89503 0.98870 0.92378 1.20107 0.95650 0.98097 1.10091 1.18110 0.87425 0.81575 0.78189 1.90819 1.16327 1.77276 1.60061 1.45865 1.11036 1.22918 1.56202 1.20987 0.93214 0.88463 0.93364 0.91909 1.22112 1.02323 0.98621 0.98397 1.21845 1.02011 0.97995 0.93351 1.21446 0.99951 0.98486 0.94830 1.21657 1.01158 0.97879 0.94583 1.20853 0.93844 0.95157 0.87839 1.42741 1.70551 1.08882 1.18406 1.19059 1.29481 0.93821 0.94924 0.93158 1.25642 1.01060 1.03401 0.95916 1.69904 1.46779 1.37769 1.09097 0.85287 0.78987 0.79769 0.76998 1.19884 1.22229 1.17368 0.72515 0.88633 0.88254 0.78159 0.79876 0.80739 0.75043 0.90736 0.90397 0.94475 0.89220 0.88999 0.91581 0.93133 0.91708 0.90590 0.95996 0.97002 0.79872 0.93251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 19.25 74.32 1.43 -1.14 16 2 C -0.25 -5.68 13.73 31.12 0.43 -5.25 16 3 C 0.18 3.90 5.78 70.17 0.41 4.31 16 4 O -0.30 -8.32 8.17 -66.43 -0.54 -8.86 16 5 C 0.35 8.21 7.51 85.13 0.64 8.85 16 6 N -0.56 -10.29 9.21 -308.01 -2.84 -13.13 16 7 C 0.16 1.70 11.17 84.71 0.95 2.65 16 8 C -0.20 -1.58 10.09 22.32 0.23 -1.35 16 9 C 0.00 -0.03 9.64 22.72 0.22 0.19 16 10 C -0.23 -4.82 5.90 -19.91 -0.12 -4.94 16 11 C 0.56 13.80 7.74 86.69 0.67 14.47 16 12 O -0.57 -19.24 14.85 16.81 0.25 -18.99 16 13 N -0.71 -12.20 4.48 -445.71 -2.00 -14.19 16 14 C 0.14 2.57 2.57 44.99 0.12 2.69 16 15 H 0.06 1.50 7.58 -2.39 -0.02 1.48 16 16 C -0.16 -2.48 9.48 71.98 0.68 -1.79 16 17 C -0.11 -1.69 4.75 30.59 0.15 -1.55 16 18 C -0.11 -2.26 5.10 30.59 0.16 -2.11 16 19 C -0.11 -3.00 5.33 30.59 0.16 -2.84 16 20 C 0.15 5.67 6.26 86.38 0.54 6.21 16 21 N -0.76 -36.03 5.41 -343.45 -1.86 -37.89 16 22 C -0.24 -14.20 10.47 84.04 0.88 -13.32 16 23 H 0.05 3.26 8.06 -2.91 -0.02 3.24 16 24 C -0.07 -4.13 5.50 84.86 0.47 -3.66 16 25 N -0.99 -63.99 13.97 21.65 0.30 -63.69 16 26 Si 0.96 45.23 27.74 68.60 1.90 47.14 16 27 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 28 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 29 H -0.25 -10.44 6.52 99.48 0.65 -9.79 16 30 H 0.26 2.20 7.80 -4.41 -0.03 2.17 16 31 H 0.10 1.85 8.10 -2.39 -0.02 1.83 16 32 H 0.10 1.83 8.10 -2.38 -0.02 1.81 16 33 H 0.20 0.52 8.06 -2.91 -0.02 0.50 16 34 H 0.18 0.07 8.06 -2.91 -0.02 0.05 16 35 H 0.18 0.80 6.52 -2.91 -0.02 0.78 16 36 H 0.41 4.36 6.70 -92.71 -0.62 3.74 16 37 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.08 1.05 8.14 -2.39 -0.02 1.04 16 39 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.07 1.32 7.75 -2.39 -0.02 1.30 16 43 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.06 1.67 8.14 -2.39 -0.02 1.66 16 45 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 46 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 47 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 48 H 0.37 16.20 5.53 -92.71 -0.51 15.69 16 49 H 0.26 15.90 8.31 -92.71 -0.77 15.13 16 Total: -1.00 -87.41 416.84 2.98 -84.42 By element: Atomic # 1 Polarization: 24.00 SS G_CDS: -0.24 Total: 23.77 kcal Atomic # 6 Polarization: -6.57 SS G_CDS: 8.00 Total: 1.43 kcal Atomic # 7 Polarization: -122.51 SS G_CDS: -6.39 Total: -128.90 kcal Atomic # 8 Polarization: -27.56 SS G_CDS: -0.29 Total: -27.86 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 1.90 Total: 47.14 kcal Total: -87.41 2.98 -84.42 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176224748.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.388 kcal (2) G-P(sol) polarization free energy of solvation -87.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds