Wall clock time and date at job start Wed Apr 1 2020 03:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.46887 * 2 1 4 4 C 1.50699 * 109.47188 * 119.99444 * 2 1 3 5 5 O 1.21286 * 119.99468 * 85.54020 * 4 2 1 6 6 N 1.34768 * 120.00550 * 265.54930 * 4 2 1 7 7 C 1.47031 * 125.64608 * 354.94962 * 6 4 2 8 8 C 1.54325 * 107.40051 * 181.10703 * 7 6 4 9 9 C 1.55157 * 102.94413 * 22.11795 * 8 7 6 10 10 H 1.08998 * 111.00739 * 82.57259 * 9 8 7 11 11 N 1.46901 * 111.00465 * 206.38731 * 9 8 7 12 12 C 1.46901 * 110.99977 * 273.54494 * 11 9 8 13 13 C 1.50698 * 109.47223 * 179.97438 * 12 11 9 14 14 O 1.21288 * 120.00149 * 359.97438 * 13 12 11 15 15 N 1.34776 * 119.99794 * 179.97438 * 13 12 11 16 16 C 1.37103 * 119.99706 * 179.97438 * 15 13 12 17 17 H 1.07994 * 119.99811 * 0.02562 * 16 15 13 18 18 C 1.38948 * 119.99595 * 180.02562 * 16 15 13 19 19 N 1.31411 * 120.00338 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99787 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47223 * 89.99526 * 20 18 16 22 22 H 1.48501 * 109.47229 * 209.99877 * 20 18 16 23 23 H 1.48509 * 109.46841 * 329.99602 * 20 18 16 24 24 C 1.47747 * 125.82595 * 174.86285 * 6 4 2 25 25 C 1.50699 * 109.47580 * 240.00168 * 2 1 3 26 26 C 1.38239 * 119.99306 * 299.72585 * 25 2 1 27 27 C 1.38234 * 119.99286 * 179.81076 * 26 25 2 28 28 C 1.38231 * 120.00314 * 0.39642 * 27 26 25 29 29 C 1.38234 * 120.00075 * 359.86023 * 28 27 26 30 30 C 1.38229 * 120.00394 * 119.99986 * 25 2 1 31 31 H 1.08998 * 109.47163 * 177.02632 * 1 2 3 32 32 H 1.08991 * 109.47906 * 297.03250 * 1 2 3 33 33 H 1.09004 * 109.46939 * 57.02895 * 1 2 3 34 34 H 1.08997 * 109.88005 * 61.61269 * 7 6 4 35 35 H 1.08998 * 109.88048 * 300.60020 * 7 6 4 36 36 H 1.08998 * 110.72113 * 140.47990 * 8 7 6 37 37 H 1.09003 * 110.72070 * 263.75079 * 8 7 6 38 38 H 1.00894 * 111.00049 * 149.58650 * 11 9 8 39 39 H 1.08998 * 109.47017 * 300.00035 * 12 11 9 40 40 H 1.09006 * 109.47193 * 59.99636 * 12 11 9 41 41 H 0.97001 * 120.00264 * 0.02562 * 15 13 12 42 42 H 0.96998 * 120.00003 * 180.02562 * 19 18 16 43 43 H 1.08996 * 110.29105 * 37.02209 * 24 6 4 44 44 H 1.08998 * 110.52780 * 274.75227 * 24 6 4 45 45 H 1.07991 * 120.00569 * 359.97438 * 26 25 2 46 46 H 1.07999 * 120.00027 * 180.22929 * 27 26 25 47 47 H 1.07999 * 120.00278 * 179.83531 * 28 27 26 48 48 H 1.08002 * 120.00086 * 179.97438 * 29 28 27 49 49 H 1.08004 * 119.99568 * 359.97438 * 30 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 2.1574 -1.9167 1.2257 6 7 2.3424 -0.0051 2.3363 7 6 2.3383 1.4610 2.4468 8 6 2.7841 1.8170 3.8808 9 6 3.5577 0.5490 4.3291 10 1 4.5838 0.5672 3.9619 11 7 3.5270 0.4027 5.7905 12 6 4.6198 1.1574 6.4183 13 6 4.5556 0.9842 7.9139 14 8 3.6849 0.2998 8.4083 15 7 5.4658 1.5899 8.7021 16 6 5.4070 1.4327 10.0628 17 1 4.6317 0.8233 10.5029 18 6 6.3451 2.0575 10.8754 19 7 7.2882 2.7995 10.3398 20 14 6.2655 1.8428 12.7293 21 1 7.0745 0.6624 13.1262 22 1 6.8043 3.0577 13.3919 23 1 4.8542 1.6377 13.1437 24 6 2.7413 -0.5731 3.6406 25 6 2.0324 -0.7103 -1.2304 26 6 1.7031 -2.0355 -1.4463 27 6 2.1608 -2.6859 -2.5769 28 6 2.9544 -2.0138 -3.4875 29 6 3.2880 -0.6902 -3.2689 30 6 2.8272 -0.0386 -2.1403 31 1 -0.3633 -1.0263 -0.0533 32 1 -0.3634 0.4670 0.9153 33 1 -0.3633 0.5593 -0.8622 34 1 1.3341 1.8437 2.2650 35 1 3.0342 1.8890 1.7253 36 1 3.4401 2.6874 3.8758 37 1 1.9194 1.9882 4.5221 38 1 3.5593 -0.5698 6.0573 39 1 5.5762 0.7863 6.0499 40 1 4.5206 2.2143 6.1706 41 1 6.1620 2.1375 8.3067 42 1 7.9432 3.2353 10.9071 43 1 3.3610 -1.4577 3.4941 44 1 1.8616 -0.8213 4.2346 45 1 1.0862 -2.5617 -0.7330 46 1 1.9005 -3.7201 -2.7475 47 1 3.3141 -2.5227 -4.3695 48 1 3.9084 -0.1652 -3.9802 49 1 3.0877 0.9956 -1.9695 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001187239670.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:28:06 Heat of formation + Delta-G solvation = -43.083558 kcal Electronic energy + Delta-G solvation = -29031.396560 eV Core-core repulsion = 24957.993016 eV Total energy + Delta-G solvation = -4073.403545 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.74423 -39.34391 -38.38463 -37.60772 -34.84341 -34.39504 -33.79216 -31.28308 -31.15852 -30.76956 -29.74278 -29.00047 -26.33991 -25.06003 -23.88553 -23.47792 -22.81880 -21.67279 -20.64928 -19.38861 -19.12920 -17.91418 -17.49525 -17.15496 -16.69310 -16.10519 -15.59234 -15.35327 -15.26083 -15.20722 -14.64997 -14.46881 -14.11482 -13.99739 -13.78351 -13.64659 -13.55238 -13.23344 -13.19288 -13.15397 -12.64495 -12.45740 -12.38383 -12.31921 -12.00118 -11.74379 -11.70035 -11.48202 -11.29399 -11.21237 -11.18826 -11.06915 -10.87946 -10.40739 -10.23855 -9.95658 -9.53186 -9.13219 -9.00084 -8.86738 -8.52177 -8.18257 -7.98786 -6.43903 -3.84828 1.03820 1.18118 2.39317 2.66527 3.16631 3.25557 3.31498 3.54360 3.87658 4.03170 4.11435 4.22607 4.25889 4.47728 4.49918 4.65176 4.72057 4.80108 4.83360 4.88846 4.92789 5.04269 5.09800 5.19718 5.20563 5.26476 5.30017 5.32017 5.34815 5.45168 5.61058 5.67785 5.69073 5.73132 5.77388 5.81356 5.82022 5.90943 5.98605 6.05931 6.19337 6.24653 6.28437 6.35610 6.74041 7.10767 7.27465 7.53214 7.53602 7.92458 8.03827 8.58506 9.15605 9.51521 10.02694 10.73739 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.028831 B = 0.001605 C = 0.001594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.945663 B =17445.897422 C =17563.719090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.066 4.066 3 H 0.097 0.903 4 C 0.537 3.463 5 O -0.533 6.533 6 N -0.616 5.616 7 C 0.099 3.901 8 C -0.123 4.123 9 C 0.072 3.928 10 H 0.058 0.942 11 N -0.656 5.656 12 C 0.052 3.948 13 C 0.440 3.560 14 O -0.583 6.583 15 N -0.563 5.563 16 C -0.300 4.300 17 H 0.103 0.897 18 C 0.023 3.977 19 N -0.902 5.902 20 Si 0.930 3.070 21 H -0.278 1.278 22 H -0.284 1.284 23 H -0.269 1.269 24 C 0.107 3.893 25 C -0.079 4.079 26 C -0.082 4.082 27 C -0.125 4.125 28 C -0.119 4.119 29 C -0.126 4.126 30 C -0.112 4.112 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.081 0.919 37 H 0.091 0.909 38 H 0.353 0.647 39 H 0.045 0.955 40 H 0.087 0.913 41 H 0.392 0.608 42 H 0.272 0.728 43 H 0.078 0.922 44 H 0.082 0.918 45 H 0.129 0.871 46 H 0.121 0.879 47 H 0.120 0.880 48 H 0.121 0.879 49 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.974 -1.549 -27.843 29.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.087 4.087 3 H 0.115 0.885 4 C 0.325 3.675 5 O -0.409 6.409 6 N -0.351 5.351 7 C -0.024 4.024 8 C -0.161 4.161 9 C -0.039 4.039 10 H 0.076 0.924 11 N -0.289 5.289 12 C -0.081 4.081 13 C 0.225 3.775 14 O -0.467 6.467 15 N -0.199 5.199 16 C -0.430 4.430 17 H 0.121 0.879 18 C -0.179 4.179 19 N -0.543 5.543 20 Si 0.757 3.243 21 H -0.204 1.204 22 H -0.209 1.209 23 H -0.194 1.194 24 C -0.016 4.016 25 C -0.080 4.080 26 C -0.100 4.100 27 C -0.143 4.143 28 C -0.137 4.137 29 C -0.144 4.144 30 C -0.130 4.130 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.100 0.900 37 H 0.110 0.890 38 H 0.174 0.826 39 H 0.063 0.937 40 H 0.105 0.895 41 H 0.225 0.775 42 H 0.081 0.919 43 H 0.096 0.904 44 H 0.100 0.900 45 H 0.147 0.853 46 H 0.139 0.861 47 H 0.138 0.862 48 H 0.139 0.861 49 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -9.821 -2.103 -27.375 29.159 hybrid contribution 1.431 -0.079 0.506 1.520 sum -8.390 -2.182 -26.869 28.233 Atomic orbital electron populations 1.21722 0.91381 1.03408 1.02855 1.20211 0.98081 0.99812 0.90592 0.88523 1.20125 0.77095 0.87281 0.83031 1.90704 1.53258 1.14148 1.82824 1.48462 1.67910 1.07580 1.11106 1.22137 1.01507 0.80185 0.98563 1.22723 1.01627 0.97912 0.93877 1.22661 0.97557 0.94859 0.88810 0.92369 1.60077 1.47019 1.17582 1.04224 1.21711 0.92199 0.99601 0.94577 1.19766 0.84869 0.85307 0.87513 1.90530 1.37489 1.43284 1.75381 1.41859 1.27016 1.44191 1.06881 1.19711 1.13277 1.28888 0.81083 0.87884 1.25265 0.95567 0.96313 1.00768 1.69609 1.16127 1.31977 1.36565 0.85852 0.78753 0.77631 0.82020 1.20418 1.20914 1.19384 1.22359 0.99624 0.96501 0.83096 1.19392 0.98934 0.94655 0.95006 1.21133 0.98827 0.93750 0.96250 1.21182 0.98515 0.99994 0.94639 1.21176 0.98311 0.94859 0.99382 1.21076 1.00569 0.95067 0.97725 1.21026 0.97615 0.99813 0.94553 0.91512 0.91665 0.91033 0.91063 0.91383 0.90011 0.88992 0.82620 0.93694 0.89481 0.77459 0.91857 0.90378 0.89990 0.85311 0.86084 0.86233 0.86090 0.86138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.95 9.04 37.16 0.34 -0.62 16 2 C -0.07 -0.55 2.61 -92.93 -0.24 -0.80 16 3 H 0.10 0.63 6.68 -51.93 -0.35 0.28 16 4 C 0.54 6.23 6.84 -10.99 -0.08 6.16 16 5 O -0.53 -8.05 14.83 5.55 0.08 -7.97 16 6 N -0.62 -6.54 3.34 -170.25 -0.57 -7.11 16 7 C 0.10 0.79 5.99 -3.06 -0.02 0.77 16 8 C -0.12 -1.17 6.60 -24.90 -0.16 -1.33 16 9 C 0.07 0.84 3.32 -65.56 -0.22 0.62 16 10 H 0.06 0.67 7.92 -51.93 -0.41 0.26 16 11 N -0.66 -9.93 6.00 -105.72 -0.63 -10.56 16 12 C 0.05 0.87 6.04 -4.98 -0.03 0.84 16 13 C 0.44 10.14 7.82 -10.99 -0.09 10.06 16 14 O -0.58 -15.57 15.78 5.55 0.09 -15.48 16 15 N -0.56 -14.03 5.29 -10.97 -0.06 -14.09 16 16 C -0.30 -8.30 9.68 -14.93 -0.14 -8.44 16 17 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 18 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 19 N -0.90 -24.27 13.05 55.50 0.72 -23.55 16 20 Si 0.93 20.90 29.55 -169.99 -5.02 15.88 16 21 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 22 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 23 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 24 C 0.11 1.26 6.42 -2.35 -0.02 1.24 16 25 C -0.08 -0.75 4.72 -104.63 -0.49 -1.25 16 26 C -0.08 -0.84 7.97 -39.58 -0.32 -1.15 16 27 C -0.13 -1.13 10.05 -39.59 -0.40 -1.53 16 28 C -0.12 -0.97 10.05 -39.59 -0.40 -1.36 16 29 C -0.13 -1.00 10.05 -39.59 -0.40 -1.40 16 30 C -0.11 -0.93 9.67 -39.59 -0.38 -1.32 16 31 H 0.07 0.52 7.31 -51.93 -0.38 0.14 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.07 0.44 7.91 -51.93 -0.41 0.03 16 36 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.35 5.63 8.23 -39.30 -0.32 5.30 16 39 H 0.05 0.69 8.09 -51.93 -0.42 0.27 16 40 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 41 H 0.39 9.32 7.90 -40.82 -0.32 8.99 16 42 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 43 H 0.08 0.99 8.00 -51.93 -0.42 0.57 16 44 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.13 1.40 6.66 -52.49 -0.35 1.05 16 46 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 47 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 48 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 49 H 0.12 0.75 7.95 -52.48 -0.42 0.34 16 LS Contribution 404.78 15.07 6.10 6.10 Total: -1.00 -33.33 404.78 -9.96 -43.29 By element: Atomic # 1 Polarization: 20.03 SS G_CDS: -7.53 Total: 12.50 kcal Atomic # 6 Polarization: 4.13 SS G_CDS: -3.14 Total: 0.99 kcal Atomic # 7 Polarization: -54.78 SS G_CDS: -0.54 Total: -55.31 kcal Atomic # 8 Polarization: -23.62 SS G_CDS: 0.17 Total: -23.45 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -33.33 -9.96 -43.29 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187239670.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.208 kcal (2) G-P(sol) polarization free energy of solvation -33.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds