Wall clock time and date at job start Wed Apr 1 2020 03:28:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.46887 * 2 1 4 4 C 1.50699 * 109.47188 * 119.99444 * 2 1 3 5 5 O 1.21286 * 119.99468 * 85.54020 * 4 2 1 6 6 N 1.34768 * 120.00550 * 265.54930 * 4 2 1 7 7 C 1.47031 * 125.64608 * 354.94962 * 6 4 2 8 8 C 1.54325 * 107.40051 * 181.10703 * 7 6 4 9 9 C 1.55157 * 102.94413 * 22.11795 * 8 7 6 10 10 H 1.08998 * 111.00739 * 82.57259 * 9 8 7 11 11 N 1.46901 * 111.00465 * 206.38731 * 9 8 7 12 12 C 1.46901 * 110.99977 * 273.54494 * 11 9 8 13 13 C 1.50698 * 109.47223 * 179.97438 * 12 11 9 14 14 O 1.21288 * 120.00149 * 359.97438 * 13 12 11 15 15 N 1.34776 * 119.99794 * 179.97438 * 13 12 11 16 16 C 1.37103 * 119.99706 * 179.97438 * 15 13 12 17 17 H 1.07994 * 119.99811 * 0.02562 * 16 15 13 18 18 C 1.38948 * 119.99595 * 180.02562 * 16 15 13 19 19 N 1.31411 * 120.00338 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99787 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47223 * 89.99526 * 20 18 16 22 22 H 1.48501 * 109.47229 * 209.99877 * 20 18 16 23 23 H 1.48509 * 109.46841 * 329.99602 * 20 18 16 24 24 C 1.47747 * 125.82595 * 174.86285 * 6 4 2 25 25 C 1.50699 * 109.47580 * 240.00168 * 2 1 3 26 26 C 1.38239 * 119.99306 * 299.72585 * 25 2 1 27 27 C 1.38234 * 119.99286 * 179.81076 * 26 25 2 28 28 C 1.38231 * 120.00314 * 0.39642 * 27 26 25 29 29 C 1.38234 * 120.00075 * 359.86023 * 28 27 26 30 30 C 1.38229 * 120.00394 * 119.99986 * 25 2 1 31 31 H 1.08998 * 109.47163 * 177.02632 * 1 2 3 32 32 H 1.08991 * 109.47906 * 297.03250 * 1 2 3 33 33 H 1.09004 * 109.46939 * 57.02895 * 1 2 3 34 34 H 1.08997 * 109.88005 * 61.61269 * 7 6 4 35 35 H 1.08998 * 109.88048 * 300.60020 * 7 6 4 36 36 H 1.08998 * 110.72113 * 140.47990 * 8 7 6 37 37 H 1.09003 * 110.72070 * 263.75079 * 8 7 6 38 38 H 1.00894 * 111.00049 * 149.58650 * 11 9 8 39 39 H 1.08998 * 109.47017 * 300.00035 * 12 11 9 40 40 H 1.09006 * 109.47193 * 59.99636 * 12 11 9 41 41 H 0.97001 * 120.00264 * 0.02562 * 15 13 12 42 42 H 0.96998 * 120.00003 * 180.02562 * 19 18 16 43 43 H 1.08996 * 110.29105 * 37.02209 * 24 6 4 44 44 H 1.08998 * 110.52780 * 274.75227 * 24 6 4 45 45 H 1.07991 * 120.00569 * 359.97438 * 26 25 2 46 46 H 1.07999 * 120.00027 * 180.22929 * 27 26 25 47 47 H 1.07999 * 120.00278 * 179.83531 * 28 27 26 48 48 H 1.08002 * 120.00086 * 179.97438 * 29 28 27 49 49 H 1.08004 * 119.99568 * 359.97438 * 30 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 2.1574 -1.9167 1.2257 6 7 2.3424 -0.0051 2.3363 7 6 2.3383 1.4610 2.4468 8 6 2.7841 1.8170 3.8808 9 6 3.5577 0.5490 4.3291 10 1 4.5838 0.5672 3.9619 11 7 3.5270 0.4027 5.7905 12 6 4.6198 1.1574 6.4183 13 6 4.5556 0.9842 7.9139 14 8 3.6849 0.2998 8.4083 15 7 5.4658 1.5899 8.7021 16 6 5.4070 1.4327 10.0628 17 1 4.6317 0.8233 10.5029 18 6 6.3451 2.0575 10.8754 19 7 7.2882 2.7995 10.3398 20 14 6.2655 1.8428 12.7293 21 1 7.0745 0.6624 13.1262 22 1 6.8043 3.0577 13.3919 23 1 4.8542 1.6377 13.1437 24 6 2.7413 -0.5731 3.6406 25 6 2.0324 -0.7103 -1.2304 26 6 1.7031 -2.0355 -1.4463 27 6 2.1608 -2.6859 -2.5769 28 6 2.9544 -2.0138 -3.4875 29 6 3.2880 -0.6902 -3.2689 30 6 2.8272 -0.0386 -2.1403 31 1 -0.3633 -1.0263 -0.0533 32 1 -0.3634 0.4670 0.9153 33 1 -0.3633 0.5593 -0.8622 34 1 1.3341 1.8437 2.2650 35 1 3.0342 1.8890 1.7253 36 1 3.4401 2.6874 3.8758 37 1 1.9194 1.9882 4.5221 38 1 3.5593 -0.5698 6.0573 39 1 5.5762 0.7863 6.0499 40 1 4.5206 2.2143 6.1706 41 1 6.1620 2.1375 8.3067 42 1 7.9432 3.2353 10.9071 43 1 3.3610 -1.4577 3.4941 44 1 1.8616 -0.8213 4.2346 45 1 1.0862 -2.5617 -0.7330 46 1 1.9005 -3.7201 -2.7475 47 1 3.3141 -2.5227 -4.3695 48 1 3.9084 -0.1652 -3.9802 49 1 3.0877 0.9956 -1.9695 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001187239670.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:28:05 Heat of formation + Delta-G solvation = -65.425143 kcal Electronic energy + Delta-G solvation = -29032.365364 eV Core-core repulsion = 24957.993016 eV Total energy + Delta-G solvation = -4074.372349 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.54894 -40.29393 -39.86156 -38.65665 -36.21604 -35.60517 -35.06121 -33.26763 -31.80907 -31.69229 -30.41920 -29.93035 -27.84044 -26.10522 -25.28932 -24.25294 -23.44261 -22.37607 -21.57970 -21.09258 -20.03053 -19.85803 -18.31589 -17.92999 -17.80136 -17.29458 -16.84647 -16.46949 -16.34684 -16.11074 -16.00987 -15.72159 -15.26949 -15.22280 -14.68499 -14.66166 -14.36268 -14.19624 -14.07071 -14.00535 -13.88912 -13.50403 -13.43495 -13.19055 -13.07888 -13.01783 -12.84593 -12.64168 -12.46372 -12.40639 -12.14849 -12.10859 -11.91985 -11.79451 -11.73839 -11.50616 -10.82003 -10.35509 -10.01348 -9.77547 -9.71808 -9.63673 -9.43158 -8.46638 -5.95225 0.40169 0.54195 1.38229 1.42419 1.53866 1.54858 1.83838 2.05535 2.29699 2.87221 2.93910 3.20775 3.31046 3.51243 3.60239 3.68935 3.77111 3.99555 4.08759 4.14554 4.24450 4.25975 4.27755 4.32332 4.33285 4.36389 4.49351 4.58179 4.62695 4.66333 4.68487 4.76180 4.78932 4.84458 4.88294 5.04782 5.11907 5.16095 5.19673 5.20662 5.28041 5.41496 5.58359 5.65255 5.70982 5.86997 6.07994 6.13024 6.28224 6.46433 6.60255 7.06896 7.12937 7.56482 8.11903 8.70595 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.028831 B = 0.001605 C = 0.001594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.945663 B =17445.897422 C =17563.719090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.057 4.057 3 H 0.125 0.875 4 C 0.530 3.470 5 O -0.579 6.579 6 N -0.616 5.616 7 C 0.099 3.901 8 C -0.118 4.118 9 C 0.076 3.924 10 H 0.068 0.932 11 N -0.668 5.668 12 C 0.068 3.932 13 C 0.437 3.563 14 O -0.624 6.624 15 N -0.572 5.572 16 C -0.335 4.335 17 H 0.078 0.922 18 C -0.012 4.012 19 N -0.919 5.919 20 Si 0.992 3.008 21 H -0.272 1.272 22 H -0.270 1.270 23 H -0.274 1.274 24 C 0.109 3.891 25 C -0.093 4.093 26 C -0.104 4.104 27 C -0.140 4.140 28 C -0.126 4.126 29 C -0.131 4.131 30 C -0.116 4.116 31 H 0.049 0.951 32 H 0.072 0.928 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.100 0.900 37 H 0.079 0.921 38 H 0.345 0.655 39 H 0.067 0.933 40 H 0.111 0.889 41 H 0.397 0.603 42 H 0.278 0.722 43 H 0.062 0.938 44 H 0.070 0.930 45 H 0.110 0.890 46 H 0.129 0.871 47 H 0.140 0.860 48 H 0.146 0.854 49 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.318 0.714 -29.584 30.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.078 4.078 3 H 0.143 0.857 4 C 0.320 3.680 5 O -0.458 6.458 6 N -0.349 5.349 7 C -0.023 4.023 8 C -0.157 4.157 9 C -0.034 4.034 10 H 0.086 0.914 11 N -0.301 5.301 12 C -0.064 4.064 13 C 0.225 3.775 14 O -0.511 6.511 15 N -0.209 5.209 16 C -0.464 4.464 17 H 0.096 0.904 18 C -0.212 4.212 19 N -0.560 5.560 20 Si 0.816 3.184 21 H -0.198 1.198 22 H -0.195 1.195 23 H -0.199 1.199 24 C -0.015 4.015 25 C -0.094 4.094 26 C -0.122 4.122 27 C -0.158 4.158 28 C -0.143 4.143 29 C -0.149 4.149 30 C -0.134 4.134 31 H 0.068 0.932 32 H 0.091 0.909 33 H 0.109 0.891 34 H 0.112 0.888 35 H 0.112 0.888 36 H 0.118 0.882 37 H 0.098 0.902 38 H 0.164 0.836 39 H 0.085 0.915 40 H 0.129 0.871 41 H 0.231 0.769 42 H 0.087 0.913 43 H 0.080 0.920 44 H 0.088 0.912 45 H 0.128 0.872 46 H 0.147 0.853 47 H 0.158 0.842 48 H 0.163 0.837 49 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -9.155 0.207 -29.144 30.549 hybrid contribution 1.208 -0.833 0.997 1.774 sum -7.948 -0.626 -28.147 29.254 Atomic orbital electron populations 1.21723 0.90493 1.02786 1.04066 1.20258 0.98698 1.00512 0.88373 0.85670 1.20798 0.76375 0.86957 0.83920 1.90684 1.55156 1.16288 1.83680 1.48563 1.67195 1.08898 1.10256 1.22348 1.03594 0.78268 0.98078 1.22722 1.01147 0.97280 0.94526 1.22687 0.98328 0.95990 0.86418 0.91416 1.60100 1.46525 1.16936 1.06496 1.21562 0.93808 1.01353 0.89696 1.20877 0.83214 0.83364 0.90084 1.90501 1.38898 1.44687 1.76989 1.41918 1.27783 1.44894 1.06353 1.19663 1.13792 1.30171 0.82822 0.90387 1.26012 0.94826 0.95557 1.04757 1.69663 1.16286 1.31973 1.38049 0.84944 0.78445 0.78121 0.76918 1.19754 1.19477 1.19851 1.22194 0.98959 0.96338 0.83972 1.19577 0.99513 0.94486 0.95783 1.21146 0.99724 0.94676 0.96632 1.21391 0.99024 1.00670 0.94755 1.21484 0.97785 0.95337 0.99741 1.21455 1.00325 0.95048 0.98036 1.21351 0.96846 1.00988 0.94229 0.93232 0.90926 0.89134 0.88842 0.88771 0.88153 0.90191 0.83595 0.91547 0.87082 0.76888 0.91289 0.91971 0.91213 0.87230 0.85324 0.84199 0.83658 0.83633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.69 9.04 71.98 0.65 -1.04 16 2 C -0.06 -0.87 2.61 -12.29 -0.03 -0.90 16 3 H 0.13 1.14 6.68 -2.39 -0.02 1.12 16 4 C 0.53 12.04 6.84 87.66 0.60 12.64 16 5 O -0.58 -18.23 14.83 -3.05 -0.05 -18.27 16 6 N -0.62 -12.26 3.34 -810.95 -2.71 -14.96 16 7 C 0.10 1.24 5.99 86.73 0.52 1.76 16 8 C -0.12 -1.92 6.60 31.78 0.21 -1.71 16 9 C 0.08 1.65 3.32 46.31 0.15 1.81 16 10 H 0.07 1.38 7.92 -2.39 -0.02 1.37 16 11 N -0.67 -19.81 6.00 -488.39 -2.93 -22.74 16 12 C 0.07 2.18 6.04 85.56 0.52 2.70 16 13 C 0.44 20.30 7.82 87.66 0.69 20.99 16 14 O -0.62 -34.25 15.78 -3.05 -0.05 -34.30 16 15 N -0.57 -28.83 5.29 -306.99 -1.62 -30.45 16 16 C -0.33 -18.88 9.68 84.04 0.81 -18.07 16 17 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 18 C -0.01 -0.62 5.50 84.93 0.47 -0.15 16 19 N -0.92 -48.93 13.05 21.66 0.28 -48.64 16 20 Si 0.99 42.66 29.55 68.60 2.03 44.69 16 21 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 22 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 23 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 24 C 0.11 2.56 6.42 86.80 0.56 3.11 16 25 C -0.09 -1.67 4.72 -19.87 -0.09 -1.76 16 26 C -0.10 -2.19 7.97 22.27 0.18 -2.01 16 27 C -0.14 -2.55 10.05 22.27 0.22 -2.33 16 28 C -0.13 -1.86 10.05 22.27 0.22 -1.64 16 29 C -0.13 -1.76 10.05 22.27 0.22 -1.53 16 30 C -0.12 -1.65 9.67 22.27 0.22 -1.44 16 31 H 0.05 0.80 7.31 -2.39 -0.02 0.78 16 32 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.09 0.81 8.14 -2.38 -0.02 0.79 16 34 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.09 0.76 7.91 -2.39 -0.02 0.74 16 36 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.34 11.18 8.23 -89.70 -0.74 10.45 16 39 H 0.07 1.88 8.09 -2.39 -0.02 1.86 16 40 H 0.11 3.08 8.14 -2.38 -0.02 3.06 16 41 H 0.40 18.85 7.90 -92.71 -0.73 18.12 16 42 H 0.28 13.84 8.31 -92.71 -0.77 13.07 16 43 H 0.06 1.64 8.00 -2.39 -0.02 1.62 16 44 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 45 H 0.11 2.64 6.66 -2.92 -0.02 2.62 16 46 H 0.13 1.95 8.06 -2.91 -0.02 1.93 16 47 H 0.14 1.40 8.06 -2.91 -0.02 1.37 16 48 H 0.15 1.18 8.06 -2.91 -0.02 1.15 16 49 H 0.15 1.25 7.95 -2.91 -0.02 1.22 16 Total: -1.00 -74.84 404.78 0.57 -74.27 By element: Atomic # 1 Polarization: 40.50 SS G_CDS: -0.50 Total: 40.00 kcal Atomic # 6 Polarization: 4.31 SS G_CDS: 6.11 Total: 10.42 kcal Atomic # 7 Polarization: -109.83 SS G_CDS: -6.98 Total: -116.80 kcal Atomic # 8 Polarization: -52.48 SS G_CDS: -0.09 Total: -52.57 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.69 kcal Total: -74.84 0.57 -74.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187239670.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.849 kcal (2) G-P(sol) polarization free energy of solvation -74.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds