Wall clock time and date at job start Wed Apr 1 2020 03:06:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08993 * 110.91345 * 2 1 4 4 C 1.55121 * 111.16278 * 236.07012 * 2 1 3 5 5 N 1.47421 * 104.94227 * 205.13389 * 4 2 1 6 6 C 1.36947 * 125.64540 * 203.97101 * 5 4 2 7 7 H 1.07995 * 120.00282 * 6.16380 * 6 5 4 8 8 C 1.38815 * 119.99564 * 186.16486 * 6 5 4 9 9 N 1.31623 * 119.99949 * 353.02913 * 8 6 5 10 10 Si 1.86801 * 119.99684 * 173.03711 * 8 6 5 11 11 H 1.48496 * 109.47389 * 94.98286 * 10 8 6 12 12 H 1.48504 * 109.46820 * 214.98192 * 10 8 6 13 13 H 1.48498 * 109.47037 * 334.97920 * 10 8 6 14 14 C 1.47022 * 108.70608 * 24.00442 * 5 4 2 15 15 C 1.54322 * 107.26830 * 358.93995 * 14 5 4 16 16 H 1.09003 * 110.72034 * 96.34875 * 15 14 5 17 17 N 1.46498 * 110.72156 * 219.44235 * 15 14 5 18 18 C 1.34774 * 120.00269 * 271.16172 * 17 15 14 19 19 O 1.21283 * 120.00278 * 359.97438 * 18 17 15 20 20 C 1.50697 * 120.00067 * 179.97438 * 18 17 15 21 21 C 1.53005 * 109.47083 * 180.02562 * 20 18 17 22 22 C 1.50697 * 109.47083 * 179.97438 * 21 20 18 23 23 C 1.37978 * 120.07716 * 262.77207 * 22 21 20 24 24 C 1.38334 * 120.15125 * 179.72539 * 23 22 21 25 25 C 1.38388 * 120.28983 * 0.29254 * 24 23 22 26 26 C 1.37939 * 120.14407 * 0.02562 * 25 24 23 27 27 C 1.39565 * 120.07693 * 83.06227 * 22 21 20 28 28 C 1.47845 * 120.14251 * 0.02562 * 27 22 21 29 29 N 1.34778 * 120.00056 * 174.88293 * 28 27 22 30 30 O 1.21559 * 119.99972 * 354.88076 * 28 27 22 31 31 H 1.08999 * 109.47428 * 296.09807 * 1 2 3 32 32 H 1.09000 * 109.47086 * 56.10091 * 1 2 3 33 33 H 1.09003 * 109.47148 * 176.10092 * 1 2 3 34 34 H 1.08996 * 110.41595 * 86.20411 * 4 2 1 35 35 H 1.09000 * 110.30376 * 324.00289 * 4 2 1 36 36 H 0.96998 * 119.99277 * 180.02562 * 9 8 6 37 37 H 1.08999 * 109.87882 * 239.52728 * 14 5 4 38 38 H 1.08992 * 109.88429 * 118.35878 * 14 5 4 39 39 H 0.97004 * 119.99997 * 91.15656 * 17 15 14 40 40 H 1.08999 * 109.47160 * 60.00046 * 20 18 17 41 41 H 1.08999 * 109.47272 * 299.99458 * 20 18 17 42 42 H 1.08999 * 109.47166 * 59.99951 * 21 20 18 43 43 H 1.09004 * 109.46984 * 299.99958 * 21 20 18 44 44 H 1.08007 * 119.92173 * 359.97438 * 23 22 21 45 45 H 1.07992 * 119.85642 * 180.27450 * 24 23 22 46 46 H 1.07999 * 119.92763 * 179.97438 * 25 24 23 47 47 H 1.07996 * 120.06906 * 180.02562 * 26 25 24 48 48 H 0.96996 * 119.99996 * 359.97438 * 29 28 27 49 49 H 0.97002 * 119.99369 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0181 0.0000 4 6 2.0900 -0.8075 -1.2003 5 7 3.4298 -1.2474 -0.7704 6 6 4.4675 -1.5742 -1.6022 7 1 4.3731 -1.4251 -2.6677 8 6 5.6407 -2.0970 -1.0757 9 7 5.8100 -2.1513 0.2284 10 14 6.9793 -2.7233 -2.2183 11 1 7.9782 -1.6485 -2.4465 12 1 7.6476 -3.8971 -1.6011 13 1 6.3763 -3.1223 -3.5153 14 6 3.4671 -1.2781 0.6990 15 6 2.0861 -0.8079 1.2022 16 1 1.4450 -1.6614 1.4229 17 7 2.2286 0.0495 2.3815 18 6 2.2497 -0.4968 3.6134 19 8 2.1504 -1.6983 3.7457 20 6 2.3968 0.3852 4.8264 21 6 2.3921 -0.4791 6.0890 22 6 2.5399 0.4029 7.3019 23 6 3.7799 0.5818 7.8800 24 6 3.9182 1.3955 8.9900 25 6 2.8145 2.0305 9.5319 26 6 1.5680 1.8550 8.9677 27 6 1.4217 1.0359 7.8469 28 6 0.0888 0.8432 7.2370 29 7 -1.0036 1.3709 7.8242 30 8 -0.0219 0.2090 6.2059 31 1 -0.3634 0.4521 0.9229 32 1 -0.3633 0.5732 -0.8530 33 1 -0.3633 -1.0253 -0.0699 34 1 2.1642 -0.1733 -2.0836 35 1 1.4553 -1.6695 -1.4053 36 1 6.6299 -2.5163 0.5962 37 1 4.2434 -0.6057 1.0642 38 1 3.6612 -2.2937 1.0437 39 1 2.3077 1.0105 2.2757 40 1 1.5669 1.0907 4.8654 41 1 3.3371 0.9332 4.7653 42 1 3.2223 -1.1843 6.0497 43 1 1.4521 -1.0275 6.1503 44 1 4.6452 0.0884 7.4623 45 1 4.8917 1.5357 9.4360 46 1 2.9291 2.6642 10.3989 47 1 0.7075 2.3515 9.3913 48 1 -0.9153 1.8767 8.6471 49 1 -1.8781 1.2448 7.4237 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001210297190.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:37 Heat of formation + Delta-G solvation = -27.597288 kcal Electronic energy + Delta-G solvation = -30182.229313 eV Core-core repulsion = 26109.497303 eV Total energy + Delta-G solvation = -4072.732010 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -40.66183 -39.27518 -38.37495 -37.39231 -34.63097 -33.72746 -33.41453 -32.46742 -31.19225 -30.29908 -29.99929 -27.62526 -25.59796 -24.99134 -24.02943 -23.25380 -21.72451 -20.79932 -20.33658 -19.81525 -19.28510 -18.21932 -17.09382 -16.83623 -16.66343 -15.87061 -15.70676 -15.45155 -15.30917 -15.04563 -14.82329 -14.48905 -13.86068 -13.78152 -13.64485 -13.29825 -13.09196 -12.86185 -12.68929 -12.63777 -12.49177 -11.96515 -11.84824 -11.78948 -11.59127 -11.31061 -11.22843 -10.96826 -10.92684 -10.71566 -10.46908 -10.29479 -10.00481 -9.88188 -9.84060 -9.74836 -9.65639 -9.30128 -9.27567 -8.94032 -8.50759 -8.27147 -6.74802 -5.63345 -2.97215 0.56173 1.03848 2.63926 3.21138 3.27372 3.44671 3.50188 3.52217 3.52891 3.79210 4.44041 4.47419 4.54463 4.57378 4.75213 5.04114 5.12102 5.15480 5.24629 5.34691 5.42202 5.44014 5.52946 5.54899 5.61750 5.69580 5.81746 5.88388 5.91632 5.99916 6.10105 6.10661 6.13473 6.26107 6.28912 6.33452 6.46324 6.47918 6.56619 6.60630 6.64535 6.71748 6.94890 7.03574 7.08335 7.65917 7.71775 7.93804 8.01818 8.13691 8.33709 8.85888 9.28795 9.89795 10.56070 11.47584 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.014202 B = 0.002525 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1971.129597 B =11088.041601 C =12657.734551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.114 4.114 3 H 0.075 0.925 4 C 0.141 3.859 5 N -0.607 5.607 6 C -0.231 4.231 7 H 0.078 0.922 8 C -0.007 4.007 9 N -0.916 5.916 10 Si 0.909 3.091 11 H -0.290 1.290 12 H -0.290 1.290 13 H -0.281 1.281 14 C 0.173 3.827 15 C 0.122 3.878 16 H 0.086 0.914 17 N -0.717 5.717 18 C 0.518 3.482 19 O -0.540 6.540 20 C -0.121 4.121 21 C -0.076 4.076 22 C -0.014 4.014 23 C -0.125 4.125 24 C -0.089 4.089 25 C -0.137 4.137 26 C -0.086 4.086 27 C -0.143 4.143 28 C 0.556 3.444 29 N -0.855 5.855 30 O -0.517 6.517 31 H 0.050 0.950 32 H 0.052 0.948 33 H 0.055 0.945 34 H 0.040 0.960 35 H 0.022 0.978 36 H 0.252 0.748 37 H 0.045 0.955 38 H 0.050 0.950 39 H 0.393 0.607 40 H 0.092 0.908 41 H 0.083 0.917 42 H 0.075 0.925 43 H 0.109 0.891 44 H 0.133 0.867 45 H 0.127 0.873 46 H 0.127 0.873 47 H 0.124 0.876 48 H 0.398 0.602 49 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.578 13.446 20.977 27.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.134 4.134 3 H 0.094 0.906 4 C 0.015 3.985 5 N -0.333 5.333 6 C -0.359 4.359 7 H 0.096 0.904 8 C -0.204 4.204 9 N -0.563 5.563 10 Si 0.740 3.260 11 H -0.218 1.218 12 H -0.217 1.217 13 H -0.206 1.206 14 C 0.048 3.952 15 C 0.017 3.983 16 H 0.104 0.896 17 N -0.367 5.367 18 C 0.304 3.696 19 O -0.416 6.416 20 C -0.161 4.161 21 C -0.113 4.113 22 C -0.015 4.015 23 C -0.143 4.143 24 C -0.107 4.107 25 C -0.155 4.155 26 C -0.105 4.105 27 C -0.146 4.146 28 C 0.342 3.658 29 N -0.420 5.420 30 O -0.393 6.393 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.058 0.942 35 H 0.039 0.961 36 H 0.062 0.938 37 H 0.064 0.936 38 H 0.068 0.932 39 H 0.226 0.774 40 H 0.110 0.890 41 H 0.101 0.899 42 H 0.094 0.906 43 H 0.127 0.873 44 H 0.151 0.849 45 H 0.145 0.855 46 H 0.144 0.856 47 H 0.142 0.858 48 H 0.227 0.773 49 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -11.318 12.022 20.412 26.254 hybrid contribution 0.576 0.518 -0.199 0.800 sum -10.742 12.540 20.213 26.100 Atomic orbital electron populations 1.21683 0.95099 1.01743 1.00883 1.22639 0.94781 0.99419 0.96572 0.90619 1.21609 0.87684 0.95006 0.94232 1.44421 1.07743 1.79291 1.01870 1.19038 0.92073 1.35336 0.89434 0.90401 1.24853 0.98278 1.01293 0.95969 1.70004 1.26379 1.50505 1.09369 0.86144 0.81791 0.78397 0.79700 1.21775 1.21653 1.20647 1.21480 0.90207 1.00350 0.83203 1.22435 0.99996 0.92801 0.83087 0.89630 1.45917 1.74682 1.10211 1.05888 1.20433 0.75877 0.88981 0.84296 1.90684 1.49232 1.15373 1.86341 1.21449 1.03357 0.98850 0.92411 1.20612 1.05672 0.96176 0.88836 1.20172 0.91699 0.94121 0.95472 1.21225 0.97179 0.99405 0.96457 1.21400 0.98972 0.95121 0.95228 1.21066 0.92532 1.01103 1.00803 1.21228 0.97865 0.96868 0.94502 1.19761 0.93440 1.02801 0.98608 1.18352 0.84646 0.78688 0.84094 1.43791 1.09905 1.58271 1.29992 1.90879 1.86328 1.39066 1.23047 0.93072 0.92929 0.92632 0.94166 0.96075 0.93794 0.93639 0.93207 0.77350 0.88952 0.89857 0.90605 0.87329 0.84884 0.85480 0.85551 0.85833 0.77305 0.76451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 9.32 37.16 0.35 -1.65 16 2 C -0.11 -2.05 3.27 -88.36 -0.29 -2.34 16 3 H 0.08 1.29 8.00 -51.93 -0.42 0.88 16 4 C 0.14 3.03 6.72 -2.42 -0.02 3.01 16 5 N -0.61 -16.21 3.40 -169.95 -0.58 -16.79 16 6 C -0.23 -6.66 10.26 -15.05 -0.15 -6.81 16 7 H 0.08 2.15 7.84 -52.49 -0.41 1.74 16 8 C -0.01 -0.21 5.48 -17.43 -0.10 -0.31 16 9 N -0.92 -28.16 10.36 55.49 0.58 -27.59 16 10 Si 0.91 22.80 29.56 -169.99 -5.02 17.77 16 11 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 12 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 13 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 14 C 0.17 4.52 5.13 -3.07 -0.02 4.51 16 15 C 0.12 2.52 2.74 -66.10 -0.18 2.34 16 16 H 0.09 1.91 7.52 -51.93 -0.39 1.52 16 17 N -0.72 -12.74 5.12 -52.03 -0.27 -13.00 16 18 C 0.52 9.66 7.83 -10.99 -0.09 9.58 16 19 O -0.54 -12.36 15.67 5.56 0.09 -12.28 16 20 C -0.12 -1.73 5.24 -27.88 -0.15 -1.87 16 21 C -0.08 -1.07 3.89 -27.88 -0.11 -1.18 16 22 C -0.01 -0.15 5.17 -104.22 -0.54 -0.69 16 23 C -0.12 -1.19 9.66 -39.64 -0.38 -1.57 16 24 C -0.09 -0.67 10.04 -39.49 -0.40 -1.06 16 25 C -0.14 -0.89 10.03 -39.64 -0.40 -1.29 16 26 C -0.09 -0.59 9.53 -39.19 -0.37 -0.96 16 27 C -0.14 -1.40 5.87 -104.97 -0.62 -2.02 16 28 C 0.56 5.85 7.95 -12.33 -0.10 5.75 16 29 N -0.85 -5.20 8.82 30.53 0.27 -4.93 16 30 O -0.52 -7.55 12.54 5.31 0.07 -7.48 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.05 0.83 8.08 -51.93 -0.42 0.41 16 34 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.02 0.46 7.99 -51.93 -0.41 0.04 16 36 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 37 H 0.05 1.29 7.43 -51.93 -0.39 0.91 16 38 H 0.05 1.51 7.37 -51.93 -0.38 1.13 16 39 H 0.39 5.78 8.54 -40.82 -0.35 5.43 16 40 H 0.09 1.25 6.76 -51.93 -0.35 0.90 16 41 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.08 1.12 7.99 -51.93 -0.41 0.71 16 43 H 0.11 1.79 5.80 -51.93 -0.30 1.49 16 44 H 0.13 1.18 8.05 -52.48 -0.42 0.75 16 45 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 46 H 0.13 0.51 8.06 -52.49 -0.42 0.08 16 47 H 0.12 0.44 6.44 -52.49 -0.34 0.10 16 48 H 0.40 1.19 6.89 -40.82 -0.28 0.91 16 49 H 0.40 2.10 8.93 -40.82 -0.36 1.74 16 LS Contribution 395.54 15.07 5.96 5.96 Total: -1.00 -37.59 395.54 -9.77 -47.37 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: -7.31 Total: 7.55 kcal Atomic # 6 Polarization: 6.96 SS G_CDS: -3.55 Total: 3.41 kcal Atomic # 7 Polarization: -62.31 SS G_CDS: 0.00 Total: -62.30 kcal Atomic # 8 Polarization: -19.91 SS G_CDS: 0.15 Total: -19.76 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -5.02 Total: 17.77 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -37.59 -9.77 -47.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210297190.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.769 kcal (2) G-P(sol) polarization free energy of solvation -37.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds