Wall clock time and date at job start Wed Apr 1 2020 03:06:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08993 * 110.91345 * 2 1 4 4 C 1.55121 * 111.16278 * 236.07012 * 2 1 3 5 5 N 1.47421 * 104.94227 * 205.13389 * 4 2 1 6 6 C 1.36947 * 125.64540 * 203.97101 * 5 4 2 7 7 H 1.07995 * 120.00282 * 6.16380 * 6 5 4 8 8 C 1.38815 * 119.99564 * 186.16486 * 6 5 4 9 9 N 1.31623 * 119.99949 * 353.02913 * 8 6 5 10 10 Si 1.86801 * 119.99684 * 173.03711 * 8 6 5 11 11 H 1.48496 * 109.47389 * 94.98286 * 10 8 6 12 12 H 1.48504 * 109.46820 * 214.98192 * 10 8 6 13 13 H 1.48498 * 109.47037 * 334.97920 * 10 8 6 14 14 C 1.47022 * 108.70608 * 24.00442 * 5 4 2 15 15 C 1.54322 * 107.26830 * 358.93995 * 14 5 4 16 16 H 1.09003 * 110.72034 * 96.34875 * 15 14 5 17 17 N 1.46498 * 110.72156 * 219.44235 * 15 14 5 18 18 C 1.34774 * 120.00269 * 271.16172 * 17 15 14 19 19 O 1.21283 * 120.00278 * 359.97438 * 18 17 15 20 20 C 1.50697 * 120.00067 * 179.97438 * 18 17 15 21 21 C 1.53005 * 109.47083 * 180.02562 * 20 18 17 22 22 C 1.50697 * 109.47083 * 179.97438 * 21 20 18 23 23 C 1.37978 * 120.07716 * 262.77207 * 22 21 20 24 24 C 1.38334 * 120.15125 * 179.72539 * 23 22 21 25 25 C 1.38388 * 120.28983 * 0.29254 * 24 23 22 26 26 C 1.37939 * 120.14407 * 0.02562 * 25 24 23 27 27 C 1.39565 * 120.07693 * 83.06227 * 22 21 20 28 28 C 1.47845 * 120.14251 * 0.02562 * 27 22 21 29 29 N 1.34778 * 120.00056 * 174.88293 * 28 27 22 30 30 O 1.21559 * 119.99972 * 354.88076 * 28 27 22 31 31 H 1.08999 * 109.47428 * 296.09807 * 1 2 3 32 32 H 1.09000 * 109.47086 * 56.10091 * 1 2 3 33 33 H 1.09003 * 109.47148 * 176.10092 * 1 2 3 34 34 H 1.08996 * 110.41595 * 86.20411 * 4 2 1 35 35 H 1.09000 * 110.30376 * 324.00289 * 4 2 1 36 36 H 0.96998 * 119.99277 * 180.02562 * 9 8 6 37 37 H 1.08999 * 109.87882 * 239.52728 * 14 5 4 38 38 H 1.08992 * 109.88429 * 118.35878 * 14 5 4 39 39 H 0.97004 * 119.99997 * 91.15656 * 17 15 14 40 40 H 1.08999 * 109.47160 * 60.00046 * 20 18 17 41 41 H 1.08999 * 109.47272 * 299.99458 * 20 18 17 42 42 H 1.08999 * 109.47166 * 59.99951 * 21 20 18 43 43 H 1.09004 * 109.46984 * 299.99958 * 21 20 18 44 44 H 1.08007 * 119.92173 * 359.97438 * 23 22 21 45 45 H 1.07992 * 119.85642 * 180.27450 * 24 23 22 46 46 H 1.07999 * 119.92763 * 179.97438 * 25 24 23 47 47 H 1.07996 * 120.06906 * 180.02562 * 26 25 24 48 48 H 0.96996 * 119.99996 * 359.97438 * 29 28 27 49 49 H 0.97002 * 119.99369 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0181 0.0000 4 6 2.0900 -0.8075 -1.2003 5 7 3.4298 -1.2474 -0.7704 6 6 4.4675 -1.5742 -1.6022 7 1 4.3731 -1.4251 -2.6677 8 6 5.6407 -2.0970 -1.0757 9 7 5.8100 -2.1513 0.2284 10 14 6.9793 -2.7233 -2.2183 11 1 7.9782 -1.6485 -2.4465 12 1 7.6476 -3.8971 -1.6011 13 1 6.3763 -3.1223 -3.5153 14 6 3.4671 -1.2781 0.6990 15 6 2.0861 -0.8079 1.2022 16 1 1.4450 -1.6614 1.4229 17 7 2.2286 0.0495 2.3815 18 6 2.2497 -0.4968 3.6134 19 8 2.1504 -1.6983 3.7457 20 6 2.3968 0.3852 4.8264 21 6 2.3921 -0.4791 6.0890 22 6 2.5399 0.4029 7.3019 23 6 3.7799 0.5818 7.8800 24 6 3.9182 1.3955 8.9900 25 6 2.8145 2.0305 9.5319 26 6 1.5680 1.8550 8.9677 27 6 1.4217 1.0359 7.8469 28 6 0.0888 0.8432 7.2370 29 7 -1.0036 1.3709 7.8242 30 8 -0.0219 0.2090 6.2059 31 1 -0.3634 0.4521 0.9229 32 1 -0.3633 0.5732 -0.8530 33 1 -0.3633 -1.0253 -0.0699 34 1 2.1642 -0.1733 -2.0836 35 1 1.4553 -1.6695 -1.4053 36 1 6.6299 -2.5163 0.5962 37 1 4.2434 -0.6057 1.0642 38 1 3.6612 -2.2937 1.0437 39 1 2.3077 1.0105 2.2757 40 1 1.5669 1.0907 4.8654 41 1 3.3371 0.9332 4.7653 42 1 3.2223 -1.1843 6.0497 43 1 1.4521 -1.0275 6.1503 44 1 4.6452 0.0884 7.4623 45 1 4.8917 1.5357 9.4360 46 1 2.9291 2.6642 10.3989 47 1 0.7075 2.3515 9.3913 48 1 -0.9153 1.8767 8.6471 49 1 -1.8781 1.2448 7.4237 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001210297190.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:35 Heat of formation + Delta-G solvation = -55.871791 kcal Electronic energy + Delta-G solvation = -30183.455388 eV Core-core repulsion = 26109.497303 eV Total energy + Delta-G solvation = -4073.958084 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.48136 -40.81103 -39.19145 -39.03162 -35.65764 -35.42401 -34.34891 -34.17335 -32.20047 -31.79953 -31.01879 -29.36969 -27.41608 -26.17569 -25.12836 -24.55358 -22.65976 -22.12686 -21.55147 -21.40047 -20.82570 -18.91439 -18.87092 -18.03335 -17.75253 -17.37444 -16.97178 -16.62381 -16.41834 -16.00280 -15.93441 -15.66676 -15.48762 -15.32283 -14.73322 -14.59984 -14.42084 -14.12262 -13.99303 -13.89083 -13.62266 -13.55089 -13.35513 -13.05854 -12.92971 -12.80124 -12.60921 -12.59280 -12.22669 -12.13939 -12.03829 -11.90801 -11.86222 -11.67498 -11.48775 -10.90086 -10.73400 -10.70076 -10.55466 -9.96550 -9.91406 -9.68581 -8.93971 -7.86990 -5.24324 -0.09602 0.40575 1.42522 1.46138 1.55462 1.73881 1.93138 2.24814 2.48752 2.60258 2.90316 3.31178 3.54430 3.69769 3.77109 3.84259 3.94638 4.02460 4.04471 4.08809 4.13373 4.27343 4.33591 4.48228 4.50222 4.55872 4.59853 4.70812 4.71161 4.85595 4.87833 4.95002 5.02913 5.05735 5.07745 5.22324 5.25387 5.29224 5.36153 5.44713 5.47951 5.53708 5.62497 5.63925 5.77683 5.95282 5.97983 6.14797 6.49266 6.64630 7.04379 7.36306 7.38383 7.73659 8.38897 9.22914 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.014202 B = 0.002525 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1971.129597 B =11088.041601 C =12657.734551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.094 4.094 3 H 0.093 0.907 4 C 0.133 3.867 5 N -0.628 5.628 6 C -0.244 4.244 7 H 0.090 0.910 8 C -0.071 4.071 9 N -0.951 5.951 10 Si 0.982 3.018 11 H -0.282 1.282 12 H -0.298 1.298 13 H -0.265 1.265 14 C 0.190 3.810 15 C 0.135 3.865 16 H 0.065 0.935 17 N -0.705 5.705 18 C 0.511 3.489 19 O -0.590 6.590 20 C -0.105 4.105 21 C -0.068 4.068 22 C -0.038 4.038 23 C -0.140 4.140 24 C -0.087 4.087 25 C -0.129 4.129 26 C -0.076 4.076 27 C -0.156 4.156 28 C 0.550 3.450 29 N -0.832 5.832 30 O -0.569 6.569 31 H 0.063 0.937 32 H 0.081 0.919 33 H 0.048 0.952 34 H 0.058 0.942 35 H 0.024 0.976 36 H 0.244 0.756 37 H 0.014 0.986 38 H -0.009 1.009 39 H 0.412 0.588 40 H 0.107 0.893 41 H 0.103 0.897 42 H 0.053 0.947 43 H 0.080 0.920 44 H 0.128 0.872 45 H 0.151 0.849 46 H 0.162 0.838 47 H 0.162 0.838 48 H 0.415 0.585 49 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.761 16.879 22.120 30.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.113 4.113 3 H 0.111 0.889 4 C 0.008 3.992 5 N -0.355 5.355 6 C -0.373 4.373 7 H 0.108 0.892 8 C -0.264 4.264 9 N -0.600 5.600 10 Si 0.809 3.191 11 H -0.209 1.209 12 H -0.225 1.225 13 H -0.189 1.189 14 C 0.064 3.936 15 C 0.029 3.971 16 H 0.083 0.917 17 N -0.356 5.356 18 C 0.299 3.701 19 O -0.470 6.470 20 C -0.145 4.145 21 C -0.105 4.105 22 C -0.039 4.039 23 C -0.158 4.158 24 C -0.105 4.105 25 C -0.147 4.147 26 C -0.095 4.095 27 C -0.159 4.159 28 C 0.337 3.663 29 N -0.397 5.397 30 O -0.449 6.449 31 H 0.082 0.918 32 H 0.100 0.900 33 H 0.067 0.933 34 H 0.076 0.924 35 H 0.041 0.959 36 H 0.054 0.946 37 H 0.032 0.968 38 H 0.009 0.991 39 H 0.248 0.752 40 H 0.125 0.875 41 H 0.121 0.879 42 H 0.072 0.928 43 H 0.098 0.902 44 H 0.146 0.854 45 H 0.169 0.831 46 H 0.180 0.820 47 H 0.179 0.821 48 H 0.248 0.752 49 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -12.561 15.541 21.568 29.402 hybrid contribution 0.912 -0.529 -0.473 1.155 sum -11.650 15.012 21.095 28.392 Atomic orbital electron populations 1.21635 0.91862 1.02147 1.02904 1.22572 0.97182 0.98930 0.92649 0.88862 1.21877 0.85281 0.95740 0.96306 1.44740 1.09437 1.79369 1.01927 1.19523 0.92709 1.34687 0.90332 0.89248 1.25804 1.01087 1.01994 0.97498 1.70269 1.26650 1.51648 1.11431 0.85019 0.78672 0.77344 0.78042 1.20916 1.22469 1.18916 1.21085 0.92555 0.96435 0.83559 1.22018 0.96379 0.93540 0.85185 0.91657 1.45781 1.74069 1.10875 1.04926 1.21311 0.74394 0.88880 0.85505 1.90658 1.51388 1.17849 1.87079 1.21405 1.04702 0.98123 0.90228 1.20383 1.03139 0.96361 0.90648 1.19958 0.93354 0.95377 0.95236 1.21285 0.96397 1.00466 0.97644 1.21721 1.00730 0.93981 0.94099 1.21530 0.91723 1.00279 1.01149 1.21631 0.99605 0.95379 0.92839 1.19818 0.92475 1.03775 0.99866 1.18604 0.85791 0.78266 0.83658 1.43592 1.09120 1.56881 1.30086 1.90861 1.87075 1.41560 1.25444 0.91756 0.90013 0.93258 0.92416 0.95855 0.94649 0.96761 0.99109 0.75155 0.87536 0.87897 0.92849 0.90152 0.85402 0.83130 0.82003 0.82054 0.75211 0.75745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.42 9.32 71.98 0.67 -2.75 16 2 C -0.09 -3.24 3.27 -9.33 -0.03 -3.27 16 3 H 0.09 2.95 8.00 -2.39 -0.02 2.93 16 4 C 0.13 5.62 6.72 86.93 0.58 6.21 16 5 N -0.63 -34.51 3.40 -691.59 -2.35 -36.86 16 6 C -0.24 -14.34 10.26 84.03 0.86 -13.48 16 7 H 0.09 4.92 7.84 -2.91 -0.02 4.90 16 8 C -0.07 -4.29 5.48 84.86 0.47 -3.82 16 9 N -0.95 -61.70 10.36 21.65 0.22 -61.47 16 10 Si 0.98 48.00 29.56 68.60 2.03 50.02 16 11 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 12 H -0.30 -14.81 7.11 99.48 0.71 -14.11 16 13 H -0.26 -12.11 7.11 99.48 0.71 -11.41 16 14 C 0.19 10.54 5.13 86.73 0.45 10.99 16 15 C 0.14 5.79 2.74 46.18 0.13 5.92 16 16 H 0.07 3.09 7.52 -2.39 -0.02 3.07 16 17 N -0.71 -25.79 5.12 -436.92 -2.24 -28.03 16 18 C 0.51 20.23 7.83 87.66 0.69 20.91 16 19 O -0.59 -29.38 15.67 -3.04 -0.05 -29.43 16 20 C -0.10 -3.14 5.24 29.85 0.16 -2.99 16 21 C -0.07 -2.09 3.89 29.85 0.12 -1.97 16 22 C -0.04 -0.88 5.17 -19.61 -0.10 -0.98 16 23 C -0.14 -2.65 9.66 22.23 0.21 -2.43 16 24 C -0.09 -1.09 10.04 22.33 0.22 -0.86 16 25 C -0.13 -1.15 10.03 22.23 0.22 -0.93 16 26 C -0.08 -0.77 9.53 22.53 0.21 -0.56 16 27 C -0.16 -2.89 5.87 -20.09 -0.12 -3.01 16 28 C 0.55 11.26 7.95 86.79 0.69 11.95 16 29 N -0.83 -8.43 8.82 -175.60 -1.55 -9.98 16 30 O -0.57 -17.25 12.54 -3.90 -0.05 -17.30 16 31 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.05 1.39 8.08 -2.39 -0.02 1.37 16 34 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 35 H 0.02 0.99 7.99 -2.39 -0.02 0.97 16 36 H 0.24 15.45 8.31 -92.71 -0.77 14.68 16 37 H 0.01 0.86 7.43 -2.39 -0.02 0.84 16 38 H -0.01 -0.62 7.37 -2.39 -0.02 -0.64 16 39 H 0.41 11.89 8.54 -92.71 -0.79 11.10 16 40 H 0.11 2.93 6.76 -2.39 -0.02 2.91 16 41 H 0.10 2.65 8.14 -2.39 -0.02 2.63 16 42 H 0.05 1.79 7.99 -2.39 -0.02 1.77 16 43 H 0.08 2.94 5.80 -2.39 -0.01 2.93 16 44 H 0.13 2.41 8.05 -2.91 -0.02 2.39 16 45 H 0.15 1.12 8.06 -2.91 -0.02 1.10 16 46 H 0.16 0.36 8.06 -2.91 -0.02 0.34 16 47 H 0.16 0.31 6.44 -2.91 -0.02 0.30 16 48 H 0.42 1.07 6.89 -92.71 -0.64 0.43 16 49 H 0.41 3.57 8.93 -92.71 -0.83 2.74 16 Total: -1.00 -90.16 395.54 0.19 -89.97 By element: Atomic # 1 Polarization: 25.40 SS G_CDS: -1.26 Total: 24.15 kcal Atomic # 6 Polarization: 13.49 SS G_CDS: 5.43 Total: 18.92 kcal Atomic # 7 Polarization: -130.43 SS G_CDS: -5.91 Total: -136.33 kcal Atomic # 8 Polarization: -46.63 SS G_CDS: -0.10 Total: -46.72 kcal Atomic # 14 Polarization: 48.00 SS G_CDS: 2.03 Total: 50.02 kcal Total: -90.16 0.19 -89.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210297190.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.099 kcal (2) G-P(sol) polarization free energy of solvation -90.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds