Wall clock time and date at job start Wed Apr 1 2020 03:12:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.47231 * 2 1 4 4 N 1.46498 * 109.47689 * 239.99571 * 2 1 3 5 5 C 1.34770 * 120.00337 * 84.99532 * 4 2 1 6 6 O 1.21556 * 119.99833 * 0.02562 * 5 4 2 7 7 C 1.47843 * 120.00106 * 180.02562 * 5 4 2 8 8 C 1.39581 * 120.14589 * 359.95977 * 7 5 4 9 9 C 1.37956 * 119.85229 * 180.02562 * 8 7 5 10 10 C 1.38365 * 120.14522 * 359.97438 * 9 8 7 11 11 C 1.38357 * 120.29117 * 0.02562 * 10 9 8 12 12 C 1.37950 * 120.14611 * 0.02562 * 11 10 9 13 13 C 1.50703 * 109.47104 * 119.99259 * 2 1 3 14 14 O 1.21276 * 120.00031 * 120.00115 * 13 2 1 15 15 N 1.34775 * 119.99870 * 300.00666 * 13 2 1 16 16 C 1.46504 * 119.99923 * 179.97438 * 15 13 2 17 17 H 1.08998 * 110.64318 * 36.68824 * 16 15 13 18 18 C 1.54328 * 110.71835 * 273.54292 * 16 15 13 19 19 N 1.47018 * 107.26983 * 219.44490 * 18 16 15 20 20 C 1.36936 * 125.64714 * 178.97735 * 19 18 16 21 21 H 1.08007 * 119.99638 * 179.97438 * 20 19 18 22 22 C 1.38810 * 120.00443 * 359.97282 * 20 19 18 23 23 N 1.31622 * 119.99548 * 0.02562 * 22 20 19 24 24 Si 1.86788 * 120.00437 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47162 * 90.00216 * 24 22 20 26 26 H 1.48499 * 109.47511 * 209.99996 * 24 22 20 27 27 H 1.48500 * 109.47147 * 330.00443 * 24 22 20 28 28 C 1.47430 * 108.70539 * 358.93744 * 19 18 16 29 29 C 1.54915 * 104.82924 * 24.13388 * 28 19 18 30 30 H 1.09002 * 111.00744 * 81.06070 * 29 28 19 31 31 C 1.53000 * 110.99995 * 204.91368 * 29 28 19 32 32 H 1.09002 * 109.47231 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.47778 * 300.00368 * 1 2 3 34 34 H 1.09007 * 109.46806 * 60.01184 * 1 2 3 35 35 H 0.97001 * 119.99706 * 265.00486 * 4 2 1 36 36 H 1.07993 * 120.06760 * 0.02562 * 8 7 5 37 37 H 1.07998 * 119.92711 * 180.25414 * 9 8 7 38 38 H 1.08003 * 119.85108 * 180.02562 * 10 9 8 39 39 H 1.08004 * 119.92094 * 179.97438 * 11 10 9 40 40 H 1.08006 * 120.07295 * 180.02562 * 12 11 10 41 41 H 0.97006 * 120.00188 * 359.97438 * 15 13 2 42 42 H 1.09000 * 109.88080 * 338.85700 * 18 16 15 43 43 H 1.08991 * 109.88248 * 100.02665 * 18 16 15 44 44 H 0.97001 * 119.99762 * 180.02562 * 23 22 20 45 45 H 1.09005 * 110.36425 * 142.96649 * 28 19 18 46 46 H 1.08997 * 110.37084 * 265.29326 * 28 19 18 47 47 H 1.09008 * 109.46914 * 172.19250 * 31 29 28 48 48 H 1.08995 * 109.47292 * 292.18976 * 31 29 28 49 49 H 1.09008 * 109.47147 * 52.19705 * 31 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1471 -0.0185 -2.3571 6 8 1.8583 1.1610 -2.4117 7 6 2.6395 -0.7157 -3.5642 8 6 2.9728 -2.0698 -3.5047 9 6 3.4322 -2.7143 -4.6347 10 6 3.5624 -2.0214 -5.8252 11 6 3.2337 -0.6790 -5.8910 12 6 2.7742 -0.0225 -4.7681 13 6 2.0323 -0.7103 1.2306 14 8 2.7295 -1.6963 1.1194 15 7 1.7066 -0.2497 2.4546 16 6 2.1944 -0.9405 3.6509 17 1 3.2056 -1.3154 3.4926 18 6 1.2417 -2.0888 4.0450 19 7 1.1468 -2.0932 5.5121 20 6 0.3829 -2.9490 6.2598 21 1 0.3819 -2.8709 7.3371 22 6 -0.3902 -3.9169 5.6335 23 7 -0.3886 -4.0123 4.3207 24 14 -1.4317 -5.0848 6.6535 25 1 -2.7794 -4.4958 6.8582 26 1 -1.5613 -6.3820 5.9425 27 1 -0.7824 -5.3049 7.9708 28 6 2.0110 -1.0242 6.0450 29 6 2.1393 -0.0037 4.8865 30 1 1.2679 0.6496 4.8430 31 6 3.4276 0.8118 5.0144 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8899 34 1 -0.3633 0.5137 -0.8902 35 1 2.2491 -1.6318 -1.1524 36 1 2.8712 -2.6118 -2.5761 37 1 3.6865 -3.7630 -4.5910 38 1 3.9221 -2.5307 -6.7071 39 1 3.3380 -0.1439 -6.8233 40 1 2.5176 1.0253 -4.8209 41 1 1.1491 0.5392 2.5435 42 1 0.2567 -1.9189 3.6103 43 1 1.6438 -3.0401 3.6967 44 1 -0.9291 -4.6884 3.8829 45 1 1.5449 -0.5567 6.9124 46 1 2.9901 -1.4239 6.3086 47 1 3.5626 1.4204 4.1202 48 1 3.3622 1.4597 5.8884 49 1 4.2758 0.1361 5.1255 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001210816248.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:12:22 Heat of formation + Delta-G solvation = -20.937644 kcal Electronic energy + Delta-G solvation = -30045.253643 eV Core-core repulsion = 25972.810417 eV Total energy + Delta-G solvation = -4072.443226 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.62995 -39.64769 -38.43676 -37.56595 -35.02745 -34.05253 -32.80393 -32.00821 -31.22060 -30.40441 -30.09120 -27.73834 -25.68068 -25.04937 -24.00262 -23.17668 -22.66210 -20.85041 -20.42215 -20.08543 -19.61512 -18.53786 -17.02558 -16.79039 -16.61396 -15.99863 -15.67591 -15.35881 -15.11074 -14.88991 -14.71125 -14.51404 -14.01359 -13.80671 -13.77127 -13.50159 -13.18420 -13.00158 -12.83251 -12.77317 -12.52833 -12.36525 -11.99802 -11.96074 -11.73072 -11.63576 -11.38348 -11.37035 -11.05456 -10.80047 -10.64912 -10.42915 -10.14524 -10.00811 -9.95864 -9.75642 -9.65373 -9.35614 -9.29177 -9.13358 -8.65336 -8.55978 -6.85759 -5.71474 -3.06461 0.58179 1.06918 2.65504 2.74751 2.84806 3.39012 3.44065 3.46390 3.50024 3.63913 4.43250 4.48358 4.53990 4.64182 4.72321 4.84025 5.00589 5.05065 5.06573 5.09502 5.18769 5.27874 5.40575 5.49938 5.52633 5.53913 5.67436 5.70963 5.73976 5.94779 5.94916 6.02044 6.09115 6.10636 6.12301 6.13504 6.15263 6.22650 6.31654 6.45418 6.57204 6.59736 6.69201 6.89090 7.35993 7.50046 7.55359 7.77883 7.82786 8.03644 8.23189 8.40920 9.19699 9.80348 10.44984 11.39204 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013647 B = 0.002412 C = 0.002190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.305059 B =11604.188706 C =12784.152360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.126 3.874 3 H 0.113 0.887 4 N -0.705 5.705 5 C 0.562 3.438 6 O -0.541 6.541 7 C -0.133 4.133 8 C -0.083 4.083 9 C -0.127 4.127 10 C -0.096 4.096 11 C -0.131 4.131 12 C -0.060 4.060 13 C 0.511 3.489 14 O -0.535 6.535 15 N -0.705 5.705 16 C 0.120 3.880 17 H 0.087 0.913 18 C 0.175 3.825 19 N -0.606 5.606 20 C -0.230 4.230 21 H 0.079 0.921 22 C -0.008 4.008 23 N -0.919 5.919 24 Si 0.912 3.088 25 H -0.289 1.289 26 H -0.291 1.291 27 H -0.281 1.281 28 C 0.141 3.859 29 C -0.114 4.114 30 H 0.078 0.922 31 C -0.138 4.138 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.411 0.589 36 H 0.130 0.870 37 H 0.130 0.870 38 H 0.126 0.874 39 H 0.129 0.871 40 H 0.136 0.864 41 H 0.398 0.602 42 H 0.051 0.949 43 H 0.048 0.952 44 H 0.252 0.748 45 H 0.042 0.958 46 H 0.022 0.978 47 H 0.050 0.950 48 H 0.054 0.946 49 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.823 9.305 -16.665 20.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.018 3.982 3 H 0.131 0.869 4 N -0.359 5.359 5 C 0.350 3.650 6 O -0.420 6.420 7 C -0.136 4.136 8 C -0.101 4.101 9 C -0.145 4.145 10 C -0.114 4.114 11 C -0.149 4.149 12 C -0.079 4.079 13 C 0.295 3.705 14 O -0.412 6.412 15 N -0.355 5.355 16 C 0.015 3.985 17 H 0.105 0.895 18 C 0.049 3.951 19 N -0.333 5.333 20 C -0.358 4.358 21 H 0.097 0.903 22 C -0.204 4.204 23 N -0.566 5.566 24 Si 0.743 3.257 25 H -0.216 1.216 26 H -0.217 1.217 27 H -0.207 1.207 28 C 0.014 3.986 29 C -0.133 4.133 30 H 0.097 0.903 31 C -0.196 4.196 32 H 0.088 0.912 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.249 0.751 36 H 0.148 0.852 37 H 0.148 0.852 38 H 0.144 0.856 39 H 0.147 0.853 40 H 0.154 0.846 41 H 0.232 0.768 42 H 0.069 0.931 43 H 0.066 0.934 44 H 0.062 0.938 45 H 0.061 0.939 46 H 0.040 0.960 47 H 0.069 0.931 48 H 0.073 0.927 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 6.978 9.221 -16.766 20.367 hybrid contribution -0.786 -0.839 0.594 1.294 sum 6.192 8.381 -16.172 19.239 Atomic orbital electron populations 1.22131 0.92489 1.03767 1.03426 1.20791 0.95941 0.97846 0.83644 0.86948 1.45679 1.66746 1.15033 1.08400 1.18248 0.77395 0.86381 0.82967 1.90758 1.50655 1.15457 1.85096 1.19922 1.04872 0.94543 0.94310 1.21454 0.96133 0.93406 0.99157 1.21158 1.00197 1.00485 0.92669 1.21402 0.97507 0.94532 0.97952 1.21161 1.00301 0.94907 0.98536 1.21286 0.95142 1.00454 0.91042 1.20375 0.80583 0.84776 0.84761 1.90703 1.38151 1.25887 1.86435 1.45848 1.52856 1.31432 1.05352 1.22547 0.99497 0.94285 0.82134 0.89479 1.21463 0.96043 0.93587 0.84018 1.44413 1.51097 1.35991 1.01785 1.19046 1.18333 1.08484 0.89937 0.90332 1.24822 1.00359 0.99395 0.95870 1.69970 1.43566 1.36378 1.06691 0.86118 0.80252 0.80386 0.78987 1.21638 1.21687 1.20689 1.21595 0.94302 0.88547 0.94142 1.22619 0.97906 0.96612 0.96211 0.90349 1.21708 0.97226 0.99606 1.01029 0.91235 0.90672 0.91019 0.75073 0.85176 0.85217 0.85584 0.85336 0.84631 0.76802 0.93113 0.93420 0.93774 0.93927 0.96016 0.93083 0.92712 0.92587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.89 9.38 37.15 0.35 -1.54 16 2 C 0.13 1.63 2.98 -69.08 -0.21 1.42 16 3 H 0.11 1.37 7.58 -51.93 -0.39 0.98 16 4 N -0.70 -9.07 4.90 -55.88 -0.27 -9.34 16 5 C 0.56 7.45 7.74 -12.33 -0.10 7.35 16 6 O -0.54 -8.41 16.01 5.32 0.09 -8.33 16 7 C -0.13 -1.50 5.87 -104.97 -0.62 -2.12 16 8 C -0.08 -0.81 9.54 -39.18 -0.37 -1.18 16 9 C -0.13 -1.04 10.03 -39.64 -0.40 -1.43 16 10 C -0.10 -0.70 10.04 -39.49 -0.40 -1.10 16 11 C -0.13 -1.03 10.03 -39.64 -0.40 -1.43 16 12 C -0.06 -0.60 9.60 -39.19 -0.38 -0.98 16 13 C 0.51 8.04 7.22 -10.98 -0.08 7.96 16 14 O -0.54 -10.31 15.56 5.56 0.09 -10.23 16 15 N -0.70 -10.63 5.02 -52.03 -0.26 -10.89 16 16 C 0.12 2.20 2.70 -66.09 -0.18 2.02 16 17 H 0.09 1.70 7.59 -51.93 -0.39 1.31 16 18 C 0.17 4.21 5.12 -3.06 -0.02 4.19 16 19 N -0.61 -15.23 3.39 -170.07 -0.58 -15.81 16 20 C -0.23 -6.35 10.28 -15.06 -0.15 -6.50 16 21 H 0.08 2.09 7.83 -52.48 -0.41 1.68 16 22 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 16 23 N -0.92 -27.02 10.31 55.49 0.57 -26.44 16 24 Si 0.91 22.08 29.55 -169.99 -5.02 17.05 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 26 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 27 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 28 C 0.14 2.79 6.70 -2.52 -0.02 2.77 16 29 C -0.11 -1.82 3.25 -88.47 -0.29 -2.11 16 30 H 0.08 1.20 8.00 -51.93 -0.42 0.78 16 31 C -0.14 -1.77 9.31 37.16 0.35 -1.42 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.07 0.78 7.56 -51.93 -0.39 0.39 16 34 H 0.07 0.84 8.14 -51.92 -0.42 0.41 16 35 H 0.41 5.17 5.82 -40.82 -0.24 4.93 16 36 H 0.13 1.17 6.40 -52.49 -0.34 0.84 16 37 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 38 H 0.13 0.61 8.06 -52.48 -0.42 0.19 16 39 H 0.13 0.70 8.06 -52.48 -0.42 0.27 16 40 H 0.14 1.33 7.65 -52.48 -0.40 0.93 16 41 H 0.40 4.84 7.94 -40.82 -0.32 4.52 16 42 H 0.05 1.34 7.27 -51.93 -0.38 0.97 16 43 H 0.05 1.35 7.50 -51.93 -0.39 0.96 16 44 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 45 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.02 0.44 7.98 -51.93 -0.41 0.02 16 47 H 0.05 0.60 8.14 -51.92 -0.42 0.17 16 48 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 49 H 0.06 0.74 8.07 -51.92 -0.42 0.32 16 LS Contribution 401.77 15.07 6.05 6.05 Total: -1.00 -34.10 401.77 -9.76 -43.86 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: -7.42 Total: 8.50 kcal Atomic # 6 Polarization: 8.57 SS G_CDS: -2.99 Total: 5.57 kcal Atomic # 7 Polarization: -61.95 SS G_CDS: -0.54 Total: -62.49 kcal Atomic # 8 Polarization: -18.72 SS G_CDS: 0.17 Total: -18.55 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -34.10 -9.76 -43.86 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210816248.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.921 kcal (2) G-P(sol) polarization free energy of solvation -34.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds