Wall clock time and date at job start Wed Apr 1 2020 03:12:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.47231 * 2 1 4 4 N 1.46498 * 109.47689 * 239.99571 * 2 1 3 5 5 C 1.34770 * 120.00337 * 84.99532 * 4 2 1 6 6 O 1.21556 * 119.99833 * 0.02562 * 5 4 2 7 7 C 1.47843 * 120.00106 * 180.02562 * 5 4 2 8 8 C 1.39581 * 120.14589 * 359.95977 * 7 5 4 9 9 C 1.37956 * 119.85229 * 180.02562 * 8 7 5 10 10 C 1.38365 * 120.14522 * 359.97438 * 9 8 7 11 11 C 1.38357 * 120.29117 * 0.02562 * 10 9 8 12 12 C 1.37950 * 120.14611 * 0.02562 * 11 10 9 13 13 C 1.50703 * 109.47104 * 119.99259 * 2 1 3 14 14 O 1.21276 * 120.00031 * 120.00115 * 13 2 1 15 15 N 1.34775 * 119.99870 * 300.00666 * 13 2 1 16 16 C 1.46504 * 119.99923 * 179.97438 * 15 13 2 17 17 H 1.08998 * 110.64318 * 36.68824 * 16 15 13 18 18 C 1.54328 * 110.71835 * 273.54292 * 16 15 13 19 19 N 1.47018 * 107.26983 * 219.44490 * 18 16 15 20 20 C 1.36936 * 125.64714 * 178.97735 * 19 18 16 21 21 H 1.08007 * 119.99638 * 179.97438 * 20 19 18 22 22 C 1.38810 * 120.00443 * 359.97282 * 20 19 18 23 23 N 1.31622 * 119.99548 * 0.02562 * 22 20 19 24 24 Si 1.86788 * 120.00437 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47162 * 90.00216 * 24 22 20 26 26 H 1.48499 * 109.47511 * 209.99996 * 24 22 20 27 27 H 1.48500 * 109.47147 * 330.00443 * 24 22 20 28 28 C 1.47430 * 108.70539 * 358.93744 * 19 18 16 29 29 C 1.54915 * 104.82924 * 24.13388 * 28 19 18 30 30 H 1.09002 * 111.00744 * 81.06070 * 29 28 19 31 31 C 1.53000 * 110.99995 * 204.91368 * 29 28 19 32 32 H 1.09002 * 109.47231 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.47778 * 300.00368 * 1 2 3 34 34 H 1.09007 * 109.46806 * 60.01184 * 1 2 3 35 35 H 0.97001 * 119.99706 * 265.00486 * 4 2 1 36 36 H 1.07993 * 120.06760 * 0.02562 * 8 7 5 37 37 H 1.07998 * 119.92711 * 180.25414 * 9 8 7 38 38 H 1.08003 * 119.85108 * 180.02562 * 10 9 8 39 39 H 1.08004 * 119.92094 * 179.97438 * 11 10 9 40 40 H 1.08006 * 120.07295 * 180.02562 * 12 11 10 41 41 H 0.97006 * 120.00188 * 359.97438 * 15 13 2 42 42 H 1.09000 * 109.88080 * 338.85700 * 18 16 15 43 43 H 1.08991 * 109.88248 * 100.02665 * 18 16 15 44 44 H 0.97001 * 119.99762 * 180.02562 * 23 22 20 45 45 H 1.09005 * 110.36425 * 142.96649 * 28 19 18 46 46 H 1.08997 * 110.37084 * 265.29326 * 28 19 18 47 47 H 1.09008 * 109.46914 * 172.19250 * 31 29 28 48 48 H 1.08995 * 109.47292 * 292.18976 * 31 29 28 49 49 H 1.09008 * 109.47147 * 52.19705 * 31 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1471 -0.0185 -2.3571 6 8 1.8583 1.1610 -2.4117 7 6 2.6395 -0.7157 -3.5642 8 6 2.9728 -2.0698 -3.5047 9 6 3.4322 -2.7143 -4.6347 10 6 3.5624 -2.0214 -5.8252 11 6 3.2337 -0.6790 -5.8910 12 6 2.7742 -0.0225 -4.7681 13 6 2.0323 -0.7103 1.2306 14 8 2.7295 -1.6963 1.1194 15 7 1.7066 -0.2497 2.4546 16 6 2.1944 -0.9405 3.6509 17 1 3.2056 -1.3154 3.4926 18 6 1.2417 -2.0888 4.0450 19 7 1.1468 -2.0932 5.5121 20 6 0.3829 -2.9490 6.2598 21 1 0.3819 -2.8709 7.3371 22 6 -0.3902 -3.9169 5.6335 23 7 -0.3886 -4.0123 4.3207 24 14 -1.4317 -5.0848 6.6535 25 1 -2.7794 -4.4958 6.8582 26 1 -1.5613 -6.3820 5.9425 27 1 -0.7824 -5.3049 7.9708 28 6 2.0110 -1.0242 6.0450 29 6 2.1393 -0.0037 4.8865 30 1 1.2679 0.6496 4.8430 31 6 3.4276 0.8118 5.0144 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8899 34 1 -0.3633 0.5137 -0.8902 35 1 2.2491 -1.6318 -1.1524 36 1 2.8712 -2.6118 -2.5761 37 1 3.6865 -3.7630 -4.5910 38 1 3.9221 -2.5307 -6.7071 39 1 3.3380 -0.1439 -6.8233 40 1 2.5176 1.0253 -4.8209 41 1 1.1491 0.5392 2.5435 42 1 0.2567 -1.9189 3.6103 43 1 1.6438 -3.0401 3.6967 44 1 -0.9291 -4.6884 3.8829 45 1 1.5449 -0.5567 6.9124 46 1 2.9901 -1.4239 6.3086 47 1 3.5626 1.4204 4.1202 48 1 3.3622 1.4597 5.8884 49 1 4.2758 0.1361 5.1255 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001210816248.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:12:21 Heat of formation + Delta-G solvation = -43.899496 kcal Electronic energy + Delta-G solvation = -30046.249343 eV Core-core repulsion = 25972.810417 eV Total energy + Delta-G solvation = -4073.438926 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.72308 -40.82302 -39.45536 -38.97277 -36.16791 -35.70551 -34.40148 -32.94043 -32.16190 -31.89825 -31.05229 -29.39779 -27.38287 -26.15851 -25.36083 -24.30952 -23.42173 -22.33671 -21.58285 -21.46899 -20.98709 -19.53299 -18.89422 -17.93428 -17.76919 -17.16075 -16.89736 -16.69310 -16.38460 -16.09240 -15.77674 -15.60595 -15.44972 -15.12452 -14.74124 -14.66309 -14.44406 -14.31821 -14.09347 -13.94584 -13.67944 -13.48624 -13.34578 -13.33321 -13.03619 -12.88762 -12.75230 -12.60371 -12.57962 -12.21182 -12.04404 -12.03157 -11.85429 -11.65523 -11.46749 -11.17806 -10.97842 -10.74440 -10.38847 -10.06808 -9.96879 -9.92499 -8.92049 -7.84825 -5.22084 -0.17344 0.40128 1.44244 1.46495 1.46707 1.55317 1.67346 1.81045 2.30037 2.49334 2.88338 3.33355 3.41016 3.58888 3.68695 3.78639 3.88823 3.95909 4.00462 4.01788 4.07660 4.11033 4.23918 4.45736 4.47875 4.50754 4.57372 4.62482 4.70661 4.72481 4.84635 4.88634 5.04755 5.05539 5.07855 5.10385 5.16627 5.20339 5.29073 5.33946 5.43526 5.45006 5.49648 5.49841 5.61528 5.78000 5.93676 6.17031 6.33237 6.46612 7.00183 7.06293 7.14989 7.75944 8.39377 9.24125 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013647 B = 0.002412 C = 0.002190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.305059 B =11604.188706 C =12784.152360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.135 3.865 3 H 0.127 0.873 4 N -0.706 5.706 5 C 0.562 3.438 6 O -0.569 6.569 7 C -0.158 4.158 8 C -0.094 4.094 9 C -0.131 4.131 10 C -0.088 4.088 11 C -0.129 4.129 12 C -0.073 4.073 13 C 0.511 3.489 14 O -0.573 6.573 15 N -0.693 5.693 16 C 0.136 3.864 17 H 0.075 0.925 18 C 0.190 3.810 19 N -0.628 5.628 20 C -0.241 4.241 21 H 0.087 0.913 22 C -0.069 4.069 23 N -0.950 5.950 24 Si 0.979 3.021 25 H -0.283 1.283 26 H -0.298 1.298 27 H -0.268 1.268 28 C 0.132 3.868 29 C -0.094 4.094 30 H 0.094 0.906 31 C -0.130 4.130 32 H 0.053 0.947 33 H 0.092 0.908 34 H 0.076 0.924 35 H 0.411 0.589 36 H 0.129 0.871 37 H 0.150 0.850 38 H 0.159 0.841 39 H 0.156 0.844 40 H 0.131 0.869 41 H 0.416 0.584 42 H 0.020 0.980 43 H -0.009 1.009 44 H 0.244 0.756 45 H 0.055 0.945 46 H 0.025 0.975 47 H 0.068 0.932 48 H 0.077 0.923 49 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.432 10.743 -17.151 21.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.026 3.974 3 H 0.144 0.856 4 N -0.359 5.359 5 C 0.352 3.648 6 O -0.450 6.450 7 C -0.161 4.161 8 C -0.112 4.112 9 C -0.149 4.149 10 C -0.106 4.106 11 C -0.146 4.146 12 C -0.092 4.092 13 C 0.296 3.704 14 O -0.453 6.453 15 N -0.344 5.344 16 C 0.030 3.970 17 H 0.093 0.907 18 C 0.063 3.937 19 N -0.355 5.355 20 C -0.370 4.370 21 H 0.105 0.895 22 C -0.262 4.262 23 N -0.599 5.599 24 Si 0.807 3.193 25 H -0.210 1.210 26 H -0.225 1.225 27 H -0.192 1.192 28 C 0.007 3.993 29 C -0.114 4.114 30 H 0.112 0.888 31 C -0.187 4.187 32 H 0.072 0.928 33 H 0.111 0.889 34 H 0.095 0.905 35 H 0.249 0.751 36 H 0.146 0.854 37 H 0.168 0.832 38 H 0.176 0.824 39 H 0.174 0.826 40 H 0.149 0.851 41 H 0.253 0.747 42 H 0.038 0.962 43 H 0.009 0.991 44 H 0.053 0.947 45 H 0.073 0.927 46 H 0.043 0.957 47 H 0.087 0.913 48 H 0.096 0.904 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 7.594 10.710 -17.223 21.656 hybrid contribution -0.921 -1.335 0.720 1.774 sum 6.674 9.375 -16.503 20.119 Atomic orbital electron populations 1.22101 0.91508 1.03048 1.04533 1.20773 0.96476 0.97878 0.82234 0.85560 1.45737 1.66675 1.15054 1.08451 1.18594 0.76703 0.86104 0.83412 1.90725 1.52148 1.16550 1.85568 1.19898 1.06876 0.95312 0.93989 1.21550 0.96681 0.92998 1.00014 1.21480 0.99474 1.01573 0.92399 1.21820 0.95851 0.94325 0.98621 1.21497 0.99045 0.95352 0.98740 1.21409 0.95849 1.00491 0.91462 1.20897 0.79693 0.84186 0.85579 1.90689 1.39893 1.27665 1.87015 1.45653 1.52870 1.31566 1.04323 1.22104 0.97094 0.93419 0.84355 0.90710 1.21098 0.95346 0.93413 0.83797 1.44730 1.51448 1.37026 1.02277 1.19486 1.18038 1.08735 0.90692 0.89529 1.25692 1.02141 1.01403 0.96950 1.70223 1.44465 1.36893 1.08323 0.85071 0.78690 0.77715 0.77821 1.21025 1.22517 1.19247 1.21865 0.93359 0.88146 0.95971 1.22546 1.00683 0.95631 0.92491 0.88765 1.21664 0.94679 0.99386 1.03018 0.92826 0.88936 0.90509 0.75071 0.85357 0.83181 0.82376 0.82603 0.85101 0.74692 0.96189 0.99083 0.94692 0.92681 0.95727 0.91300 0.90386 0.93044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.62 9.38 71.98 0.68 -2.94 16 2 C 0.13 3.48 2.98 44.24 0.13 3.61 16 3 H 0.13 2.97 7.58 -2.39 -0.02 2.95 16 4 N -0.71 -18.74 4.90 -448.99 -2.20 -20.95 16 5 C 0.56 15.27 7.74 86.79 0.67 15.95 16 6 O -0.57 -17.94 16.01 -3.89 -0.06 -18.00 16 7 C -0.16 -3.61 5.87 -20.09 -0.12 -3.73 16 8 C -0.09 -1.83 9.54 22.53 0.21 -1.62 16 9 C -0.13 -1.94 10.03 22.23 0.22 -1.72 16 10 C -0.09 -1.06 10.04 22.33 0.22 -0.84 16 11 C -0.13 -1.76 10.03 22.23 0.22 -1.53 16 12 C -0.07 -1.44 9.60 22.52 0.22 -1.22 16 13 C 0.51 16.33 7.22 87.66 0.63 16.96 16 14 O -0.57 -23.04 15.56 -3.02 -0.05 -23.08 16 15 N -0.69 -20.65 5.02 -436.91 -2.19 -22.84 16 16 C 0.14 5.01 2.70 46.18 0.12 5.14 16 17 H 0.07 2.98 7.59 -2.39 -0.02 2.96 16 18 C 0.19 9.56 5.12 86.73 0.44 10.00 16 19 N -0.63 -32.16 3.39 -691.97 -2.35 -34.51 16 20 C -0.24 -13.48 10.28 84.03 0.86 -12.62 16 21 H 0.09 4.58 7.83 -2.91 -0.02 4.56 16 22 C -0.07 -3.98 5.49 84.86 0.47 -3.51 16 23 N -0.95 -58.43 10.31 21.65 0.22 -58.21 16 24 Si 0.98 46.22 29.55 68.60 2.03 48.25 16 25 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 26 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 27 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 28 C 0.13 5.09 6.70 86.86 0.58 5.67 16 29 C -0.09 -2.82 3.25 -9.40 -0.03 -2.85 16 30 H 0.09 2.59 8.00 -2.39 -0.02 2.57 16 31 C -0.13 -2.90 9.31 71.98 0.67 -2.23 16 32 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.09 1.83 7.56 -2.39 -0.02 1.81 16 34 H 0.08 1.76 8.14 -2.38 -0.02 1.74 16 35 H 0.41 10.94 5.82 -92.71 -0.54 10.40 16 36 H 0.13 2.44 6.40 -2.91 -0.02 2.42 16 37 H 0.15 1.54 8.06 -2.91 -0.02 1.51 16 38 H 0.16 0.89 8.06 -2.91 -0.02 0.86 16 39 H 0.16 1.22 8.06 -2.91 -0.02 1.19 16 40 H 0.13 2.60 7.65 -2.91 -0.02 2.58 16 41 H 0.42 9.42 7.94 -92.70 -0.74 8.68 16 42 H 0.02 1.11 7.27 -2.39 -0.02 1.09 16 43 H -0.01 -0.55 7.50 -2.39 -0.02 -0.57 16 44 H 0.24 14.71 8.31 -92.71 -0.77 13.94 16 45 H 0.05 2.00 8.14 -2.38 -0.02 1.98 16 46 H 0.02 0.95 7.98 -2.39 -0.02 0.94 16 47 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 48 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 49 H 0.05 1.21 8.07 -2.38 -0.02 1.20 16 Total: -1.00 -78.32 401.77 1.31 -77.01 By element: Atomic # 1 Polarization: 30.11 SS G_CDS: -0.30 Total: 29.81 kcal Atomic # 6 Polarization: 16.31 SS G_CDS: 6.21 Total: 22.53 kcal Atomic # 7 Polarization: -129.99 SS G_CDS: -6.52 Total: -136.51 kcal Atomic # 8 Polarization: -40.98 SS G_CDS: -0.11 Total: -41.09 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 2.03 Total: 48.25 kcal Total: -78.32 1.31 -77.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210816248.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.112 kcal (2) G-P(sol) polarization free energy of solvation -78.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds