Wall clock time and date at job start Wed Apr 1 2020 04:48:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08991 * 109.47090 * 2 1 4 4 C 1.53008 * 109.46695 * 119.99917 * 2 1 3 5 5 C 1.50696 * 109.46953 * 294.99656 * 4 2 1 6 6 N 1.34777 * 119.99921 * 179.97438 * 5 4 2 7 7 O 1.21288 * 120.00539 * 0.02562 * 5 4 2 8 8 C 1.50703 * 109.47200 * 239.99435 * 2 1 3 9 9 O 1.21279 * 119.99825 * 274.84982 * 8 2 1 10 10 N 1.34773 * 119.99627 * 94.84711 * 8 2 1 11 11 C 1.47023 * 125.64928 * 174.81863 * 10 8 2 12 12 C 1.54319 * 107.27390 * 178.99970 * 11 10 8 13 13 H 1.08995 * 110.72509 * 96.16185 * 12 11 10 14 14 C 1.50704 * 110.87088 * 219.37391 * 12 11 10 15 15 C 1.38231 * 120.00003 * 53.33261 * 14 12 11 16 16 C 1.38235 * 119.99759 * 179.81226 * 15 14 12 17 17 C 1.38235 * 119.99891 * 0.39560 * 16 15 14 18 18 C 1.38230 * 120.00310 * 359.85801 * 17 16 15 19 19 C 1.38236 * 119.99522 * 233.60912 * 14 12 11 20 20 C 1.55159 * 102.93958 * 337.80284 * 12 11 10 21 21 H 1.09004 * 111.00536 * 277.39003 * 20 12 11 22 22 N 1.46501 * 111.00227 * 153.57920 * 20 12 11 23 23 C 1.36942 * 120.00054 * 158.17931 * 22 20 12 24 24 H 1.08004 * 119.99856 * 359.97438 * 23 22 20 25 25 C 1.38811 * 120.00233 * 179.97438 * 23 22 20 26 26 N 1.31619 * 119.99793 * 0.02562 * 25 23 22 27 27 Si 1.86795 * 119.99967 * 179.97438 * 25 23 22 28 28 H 1.48496 * 109.47498 * 270.00132 * 27 25 23 29 29 H 1.48493 * 109.47390 * 30.00886 * 27 25 23 30 30 H 1.48503 * 109.46845 * 150.00295 * 27 25 23 31 31 C 1.47472 * 125.62826 * 354.84192 * 10 8 2 32 32 H 1.08998 * 109.47141 * 185.46366 * 1 2 3 33 33 H 1.09003 * 109.46853 * 305.46540 * 1 2 3 34 34 H 1.09004 * 109.46803 * 65.46214 * 1 2 3 35 35 H 1.08997 * 109.46977 * 55.00030 * 4 2 1 36 36 H 1.09004 * 109.46672 * 174.99909 * 4 2 1 37 37 H 0.96998 * 120.00109 * 0.02562 * 6 5 4 38 38 H 0.96998 * 120.00212 * 180.02562 * 6 5 4 39 39 H 1.08994 * 109.88114 * 59.57843 * 11 10 8 40 40 H 1.09002 * 109.87824 * 298.41346 * 11 10 8 41 41 H 1.07994 * 120.00309 * 359.97438 * 15 14 12 42 42 H 1.07997 * 120.00395 * 180.23020 * 16 15 14 43 43 H 1.08004 * 120.00257 * 179.83032 * 17 16 15 44 44 H 1.08004 * 120.00346 * 179.97438 * 18 17 16 45 45 H 1.07995 * 120.00539 * 359.97266 * 19 14 12 46 46 H 0.97001 * 120.00143 * 338.17802 * 22 20 12 47 47 H 0.97000 * 120.00162 * 359.97438 * 26 25 23 48 48 H 1.09003 * 110.34691 * 85.23304 * 31 10 8 49 49 H 1.08994 * 110.41045 * 322.89384 * 31 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6413 0.0571 2.4766 6 7 1.9843 -0.3918 3.7002 7 8 1.0109 1.0871 2.3633 8 6 2.0324 -0.7105 -1.2304 9 8 2.1508 -1.9175 -1.2277 10 7 2.3500 -0.0046 -2.3337 11 6 2.9494 -0.5533 -3.5589 12 6 3.1091 0.6154 -4.5540 13 1 4.1176 1.0264 -4.5075 14 6 2.7789 0.1751 -5.9569 15 6 1.5704 -0.4417 -6.2213 16 6 1.2659 -0.8420 -7.5088 17 6 2.1733 -0.6330 -8.5305 18 6 3.3840 -0.0210 -8.2651 19 6 3.6870 0.3829 -6.9782 20 6 2.0709 1.6498 -4.0446 21 1 1.0729 1.4171 -4.4161 22 7 2.4616 3.0122 -4.4154 23 6 1.5185 4.0035 -4.4723 24 1 0.4865 3.7808 -4.2443 25 6 1.8887 5.2945 -4.8231 26 7 3.1462 5.5657 -5.1015 27 14 0.6021 6.6464 -4.9015 28 1 0.0285 6.7052 -6.2699 29 1 -0.4780 6.3591 -3.9238 30 1 1.2332 7.9499 -4.5729 31 6 2.1541 1.4462 -2.5112 32 1 -0.3633 -1.0230 0.0978 33 1 -0.3633 0.5963 0.8370 34 1 -0.3633 0.4268 -0.9349 35 1 1.6053 -1.7198 1.2952 36 1 3.1263 -0.7995 1.2057 37 1 2.4881 -1.2157 3.7909 38 1 1.7274 0.1090 4.4902 39 1 2.2947 -1.3144 -3.9831 40 1 3.9249 -0.9841 -3.3335 41 1 0.8630 -0.6084 -5.4224 42 1 0.3202 -1.3206 -7.7162 43 1 1.9366 -0.9483 -9.5360 44 1 4.0932 0.1419 -9.0633 45 1 4.6328 0.8611 -6.7709 46 1 3.3883 3.2122 -4.6205 47 1 3.8143 4.8636 -5.0612 48 1 3.0012 1.9960 -2.1009 49 1 1.2270 1.7656 -2.0352 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001211649242.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:48:09 Heat of formation + Delta-G solvation = -41.911903 kcal Electronic energy + Delta-G solvation = -30613.507330 eV Core-core repulsion = 26540.154592 eV Total energy + Delta-G solvation = -4073.352738 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -40.50303 -39.72121 -38.90132 -37.29570 -34.40015 -34.21084 -33.90717 -32.59323 -30.86479 -30.70848 -28.65940 -27.88290 -27.32809 -24.80256 -23.55664 -22.83531 -22.39012 -21.31124 -20.62709 -19.79527 -18.79218 -17.80236 -17.56776 -17.25361 -16.71002 -16.40195 -15.84017 -15.53696 -15.17931 -14.94571 -14.85591 -14.27564 -14.13496 -13.85532 -13.68144 -13.49002 -13.28846 -13.18020 -13.06941 -12.81553 -12.59949 -12.48212 -12.21869 -11.96460 -11.74543 -11.46438 -11.29010 -11.14583 -10.91827 -10.83127 -10.76536 -10.59939 -10.34430 -10.14471 -10.05237 -9.93537 -9.60877 -9.27635 -9.07877 -8.71004 -8.51572 -8.34503 -7.16798 -6.18047 -3.20621 1.56069 1.62028 2.43612 2.69472 2.98668 3.43465 3.50238 3.53928 3.67788 3.96368 4.41236 4.56011 4.68338 4.80443 4.82965 4.91218 4.93701 5.10842 5.17489 5.18366 5.28434 5.34760 5.46161 5.48074 5.49885 5.52491 5.59664 5.68854 5.69919 5.76288 5.84881 5.90369 5.97610 6.00186 6.11042 6.15781 6.24389 6.26167 6.31863 6.42202 6.53815 6.63210 6.68225 6.70683 6.87977 7.04939 7.20927 7.67213 7.73564 8.03998 8.25724 8.67250 9.09543 9.96328 10.08744 11.29667 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.007670 B = 0.003753 C = 0.002714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3649.738778 B = 7458.058391 C =10313.377558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.091 4.091 3 H 0.100 0.900 4 C -0.125 4.125 5 C 0.518 3.482 6 N -0.859 5.859 7 O -0.535 6.535 8 C 0.533 3.467 9 O -0.554 6.554 10 N -0.612 5.612 11 C 0.121 3.879 12 C -0.077 4.077 13 H 0.090 0.910 14 C -0.052 4.052 15 C -0.113 4.113 16 C -0.119 4.119 17 C -0.129 4.129 18 C -0.119 4.119 19 C -0.109 4.109 20 C 0.191 3.809 21 H 0.071 0.929 22 N -0.718 5.718 23 C -0.338 4.338 24 H 0.067 0.933 25 C -0.037 4.037 26 N -0.939 5.939 27 Si 1.080 2.920 28 H -0.295 1.295 29 H -0.293 1.293 30 H -0.287 1.287 31 C 0.070 3.930 32 H 0.056 0.944 33 H 0.085 0.915 34 H 0.060 0.940 35 H 0.106 0.894 36 H 0.096 0.904 37 H 0.401 0.599 38 H 0.401 0.599 39 H 0.071 0.929 40 H 0.065 0.935 41 H 0.119 0.881 42 H 0.118 0.882 43 H 0.116 0.884 44 H 0.118 0.882 45 H 0.120 0.880 46 H 0.370 0.630 47 H 0.256 0.744 48 H 0.070 0.930 49 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.068 -16.207 7.713 17.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.113 4.113 3 H 0.119 0.881 4 C -0.166 4.166 5 C 0.303 3.697 6 N -0.423 5.423 7 O -0.411 6.411 8 C 0.322 3.678 9 O -0.433 6.433 10 N -0.345 5.345 11 C -0.002 4.002 12 C -0.097 4.097 13 H 0.109 0.891 14 C -0.052 4.052 15 C -0.131 4.131 16 C -0.138 4.138 17 C -0.147 4.147 18 C -0.137 4.137 19 C -0.127 4.127 20 C 0.078 3.922 21 H 0.088 0.912 22 N -0.359 5.359 23 C -0.468 4.468 24 H 0.085 0.915 25 C -0.235 4.235 26 N -0.584 5.584 27 Si 0.911 3.089 28 H -0.222 1.222 29 H -0.220 1.220 30 H -0.213 1.213 31 C -0.056 4.056 32 H 0.075 0.925 33 H 0.104 0.896 34 H 0.079 0.921 35 H 0.124 0.876 36 H 0.114 0.886 37 H 0.229 0.771 38 H 0.231 0.769 39 H 0.089 0.911 40 H 0.084 0.916 41 H 0.137 0.863 42 H 0.136 0.864 43 H 0.134 0.866 44 H 0.136 0.864 45 H 0.138 0.862 46 H 0.204 0.796 47 H 0.067 0.933 48 H 0.089 0.911 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.906 -14.607 7.208 16.313 hybrid contribution 0.751 -1.675 0.641 1.945 sum -0.155 -16.282 7.850 18.076 Atomic orbital electron populations 1.21830 0.91967 1.02525 1.03875 1.20959 0.98667 1.00852 0.90786 0.88139 1.21498 1.03252 1.00511 0.91303 1.20655 0.78484 0.85348 0.85195 1.43884 1.60462 1.29613 1.08299 1.90755 1.39338 1.24376 1.86629 1.20256 0.77065 0.86949 0.83561 1.90653 1.54926 1.14040 1.83711 1.48543 1.61240 1.10423 1.14254 1.21942 0.98253 0.95808 0.84222 1.21559 1.01610 0.95812 0.90680 0.89127 1.19520 0.94259 0.97056 0.94399 1.20956 0.96425 0.98832 0.96838 1.21051 0.99210 1.00487 0.93004 1.21060 0.94489 1.00325 0.98835 1.21076 0.97115 0.98943 0.96563 1.21029 0.99435 0.99499 0.92698 1.21297 0.95927 0.85205 0.89738 0.91152 1.42258 1.08240 1.03480 1.81875 1.20044 0.90746 0.90698 1.45331 0.91508 1.25746 1.00844 0.97758 0.99158 1.70865 1.00936 1.35271 1.51295 0.83236 0.73829 0.75866 0.76015 1.22247 1.21971 1.21332 1.23577 1.01827 0.78332 1.01834 0.92516 0.89614 0.92056 0.87625 0.88579 0.77062 0.76892 0.91101 0.91639 0.86342 0.86427 0.86550 0.86367 0.86214 0.79606 0.93312 0.91143 0.90579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 8.85 37.16 0.33 -1.53 16 2 C -0.09 -1.19 1.80 -91.76 -0.17 -1.36 16 3 H 0.10 1.42 6.96 -51.93 -0.36 1.06 16 4 C -0.13 -1.30 4.75 -27.88 -0.13 -1.43 16 5 C 0.52 5.51 7.84 -10.99 -0.09 5.42 16 6 N -0.86 -5.53 8.87 31.22 0.28 -5.26 16 7 O -0.53 -7.90 14.81 5.55 0.08 -7.82 16 8 C 0.53 8.13 6.84 -10.99 -0.08 8.05 16 9 O -0.55 -9.60 16.70 5.56 0.09 -9.51 16 10 N -0.61 -9.43 3.33 -170.49 -0.57 -10.00 16 11 C 0.12 1.79 6.34 -3.07 -0.02 1.77 16 12 C -0.08 -1.20 2.80 -89.94 -0.25 -1.46 16 13 H 0.09 1.41 7.80 -51.93 -0.41 1.01 16 14 C -0.05 -0.81 4.95 -104.62 -0.52 -1.33 16 15 C -0.11 -1.68 8.12 -39.58 -0.32 -2.00 16 16 C -0.12 -1.62 10.05 -39.58 -0.40 -2.01 16 17 C -0.13 -1.68 10.05 -39.59 -0.40 -2.08 16 18 C -0.12 -1.62 10.05 -39.58 -0.40 -2.02 16 19 C -0.11 -1.63 9.68 -39.58 -0.38 -2.01 16 20 C 0.19 3.55 3.09 -65.78 -0.20 3.34 16 21 H 0.07 1.39 7.19 -51.93 -0.37 1.01 16 22 N -0.72 -16.61 5.26 -51.34 -0.27 -16.88 16 23 C -0.34 -8.98 9.97 -15.06 -0.15 -9.13 16 24 H 0.07 1.77 7.83 -52.48 -0.41 1.36 16 25 C -0.04 -1.03 5.50 -17.43 -0.10 -1.12 16 26 N -0.94 -27.95 13.70 55.49 0.76 -27.19 16 27 Si 1.08 25.42 29.92 -169.99 -5.09 20.34 16 28 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 29 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 30 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 31 C 0.07 1.18 5.86 -2.50 -0.01 1.17 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.09 1.15 6.07 -51.93 -0.32 0.84 16 34 H 0.06 0.81 7.96 -51.93 -0.41 0.40 16 35 H 0.11 1.00 8.02 -51.93 -0.42 0.58 16 36 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.40 1.40 8.83 -40.82 -0.36 1.04 16 38 H 0.40 2.24 8.93 -40.82 -0.36 1.87 16 39 H 0.07 1.05 6.67 -51.93 -0.35 0.71 16 40 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 41 H 0.12 1.70 7.30 -52.49 -0.38 1.31 16 42 H 0.12 1.32 8.06 -52.49 -0.42 0.89 16 43 H 0.12 1.22 8.06 -52.48 -0.42 0.80 16 44 H 0.12 1.35 8.06 -52.48 -0.42 0.92 16 45 H 0.12 1.67 7.98 -52.49 -0.42 1.25 16 46 H 0.37 8.86 6.57 -40.82 -0.27 8.59 16 47 H 0.26 7.44 6.77 -40.82 -0.28 7.16 16 48 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 49 H 0.08 1.30 7.50 -51.93 -0.39 0.91 16 LS Contribution 399.57 15.07 6.02 6.02 Total: -1.00 -34.02 399.57 -9.23 -43.24 By element: Atomic # 1 Polarization: 22.03 SS G_CDS: -7.26 Total: 14.77 kcal Atomic # 6 Polarization: -4.44 SS G_CDS: -3.28 Total: -7.72 kcal Atomic # 7 Polarization: -59.53 SS G_CDS: 0.20 Total: -59.33 kcal Atomic # 8 Polarization: -17.50 SS G_CDS: 0.18 Total: -17.33 kcal Atomic # 14 Polarization: 25.42 SS G_CDS: -5.09 Total: 20.34 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -34.02 -9.23 -43.24 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211649242.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.333 kcal (2) G-P(sol) polarization free energy of solvation -34.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds