Wall clock time and date at job start Wed Apr 1 2020 04:48:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08991 * 109.47090 * 2 1 4 4 C 1.53008 * 109.46695 * 119.99917 * 2 1 3 5 5 C 1.50696 * 109.46953 * 294.99656 * 4 2 1 6 6 N 1.34777 * 119.99921 * 179.97438 * 5 4 2 7 7 O 1.21288 * 120.00539 * 0.02562 * 5 4 2 8 8 C 1.50703 * 109.47200 * 239.99435 * 2 1 3 9 9 O 1.21279 * 119.99825 * 274.84982 * 8 2 1 10 10 N 1.34773 * 119.99627 * 94.84711 * 8 2 1 11 11 C 1.47023 * 125.64928 * 174.81863 * 10 8 2 12 12 C 1.54319 * 107.27390 * 178.99970 * 11 10 8 13 13 H 1.08995 * 110.72509 * 96.16185 * 12 11 10 14 14 C 1.50704 * 110.87088 * 219.37391 * 12 11 10 15 15 C 1.38231 * 120.00003 * 53.33261 * 14 12 11 16 16 C 1.38235 * 119.99759 * 179.81226 * 15 14 12 17 17 C 1.38235 * 119.99891 * 0.39560 * 16 15 14 18 18 C 1.38230 * 120.00310 * 359.85801 * 17 16 15 19 19 C 1.38236 * 119.99522 * 233.60912 * 14 12 11 20 20 C 1.55159 * 102.93958 * 337.80284 * 12 11 10 21 21 H 1.09004 * 111.00536 * 277.39003 * 20 12 11 22 22 N 1.46501 * 111.00227 * 153.57920 * 20 12 11 23 23 C 1.36942 * 120.00054 * 158.17931 * 22 20 12 24 24 H 1.08004 * 119.99856 * 359.97438 * 23 22 20 25 25 C 1.38811 * 120.00233 * 179.97438 * 23 22 20 26 26 N 1.31619 * 119.99793 * 0.02562 * 25 23 22 27 27 Si 1.86795 * 119.99967 * 179.97438 * 25 23 22 28 28 H 1.48496 * 109.47498 * 270.00132 * 27 25 23 29 29 H 1.48493 * 109.47390 * 30.00886 * 27 25 23 30 30 H 1.48503 * 109.46845 * 150.00295 * 27 25 23 31 31 C 1.47472 * 125.62826 * 354.84192 * 10 8 2 32 32 H 1.08998 * 109.47141 * 185.46366 * 1 2 3 33 33 H 1.09003 * 109.46853 * 305.46540 * 1 2 3 34 34 H 1.09004 * 109.46803 * 65.46214 * 1 2 3 35 35 H 1.08997 * 109.46977 * 55.00030 * 4 2 1 36 36 H 1.09004 * 109.46672 * 174.99909 * 4 2 1 37 37 H 0.96998 * 120.00109 * 0.02562 * 6 5 4 38 38 H 0.96998 * 120.00212 * 180.02562 * 6 5 4 39 39 H 1.08994 * 109.88114 * 59.57843 * 11 10 8 40 40 H 1.09002 * 109.87824 * 298.41346 * 11 10 8 41 41 H 1.07994 * 120.00309 * 359.97438 * 15 14 12 42 42 H 1.07997 * 120.00395 * 180.23020 * 16 15 14 43 43 H 1.08004 * 120.00257 * 179.83032 * 17 16 15 44 44 H 1.08004 * 120.00346 * 179.97438 * 18 17 16 45 45 H 1.07995 * 120.00539 * 359.97266 * 19 14 12 46 46 H 0.97001 * 120.00143 * 338.17802 * 22 20 12 47 47 H 0.97000 * 120.00162 * 359.97438 * 26 25 23 48 48 H 1.09003 * 110.34691 * 85.23304 * 31 10 8 49 49 H 1.08994 * 110.41045 * 322.89384 * 31 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6413 0.0571 2.4766 6 7 1.9843 -0.3918 3.7002 7 8 1.0109 1.0871 2.3633 8 6 2.0324 -0.7105 -1.2304 9 8 2.1508 -1.9175 -1.2277 10 7 2.3500 -0.0046 -2.3337 11 6 2.9494 -0.5533 -3.5589 12 6 3.1091 0.6154 -4.5540 13 1 4.1176 1.0264 -4.5075 14 6 2.7789 0.1751 -5.9569 15 6 1.5704 -0.4417 -6.2213 16 6 1.2659 -0.8420 -7.5088 17 6 2.1733 -0.6330 -8.5305 18 6 3.3840 -0.0210 -8.2651 19 6 3.6870 0.3829 -6.9782 20 6 2.0709 1.6498 -4.0446 21 1 1.0729 1.4171 -4.4161 22 7 2.4616 3.0122 -4.4154 23 6 1.5185 4.0035 -4.4723 24 1 0.4865 3.7808 -4.2443 25 6 1.8887 5.2945 -4.8231 26 7 3.1462 5.5657 -5.1015 27 14 0.6021 6.6464 -4.9015 28 1 0.0285 6.7052 -6.2699 29 1 -0.4780 6.3591 -3.9238 30 1 1.2332 7.9499 -4.5729 31 6 2.1541 1.4462 -2.5112 32 1 -0.3633 -1.0230 0.0978 33 1 -0.3633 0.5963 0.8370 34 1 -0.3633 0.4268 -0.9349 35 1 1.6053 -1.7198 1.2952 36 1 3.1263 -0.7995 1.2057 37 1 2.4881 -1.2157 3.7909 38 1 1.7274 0.1090 4.4902 39 1 2.2947 -1.3144 -3.9831 40 1 3.9249 -0.9841 -3.3335 41 1 0.8630 -0.6084 -5.4224 42 1 0.3202 -1.3206 -7.7162 43 1 1.9366 -0.9483 -9.5360 44 1 4.0932 0.1419 -9.0633 45 1 4.6328 0.8611 -6.7709 46 1 3.3883 3.2122 -4.6205 47 1 3.8143 4.8636 -5.0612 48 1 3.0012 1.9960 -2.1009 49 1 1.2270 1.7656 -2.0352 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001211649242.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:48:08 Heat of formation + Delta-G solvation = -64.990405 kcal Electronic energy + Delta-G solvation = -30614.508089 eV Core-core repulsion = 26540.154592 eV Total energy + Delta-G solvation = -4074.353497 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.71083 -40.73915 -39.99943 -38.61144 -36.22522 -35.28435 -34.66635 -33.89231 -32.59885 -31.79381 -29.84879 -29.01595 -28.75840 -26.14755 -25.36407 -23.93621 -23.52965 -22.69706 -21.54293 -21.07924 -19.97741 -19.47511 -18.81526 -18.04835 -17.92189 -17.50706 -17.06109 -16.71093 -16.41283 -16.12681 -16.03705 -15.78919 -15.56134 -15.33587 -14.86805 -14.66639 -14.53560 -14.38734 -14.28855 -14.10075 -13.78168 -13.66589 -13.44387 -13.12811 -13.01259 -12.82574 -12.62943 -12.60594 -12.27459 -12.16145 -12.11036 -11.88266 -11.85500 -11.68446 -11.29730 -11.14051 -11.00997 -10.80921 -10.59878 -9.85411 -9.75469 -9.59859 -9.11060 -8.36244 -5.32524 0.44749 0.51832 1.45572 1.60131 1.61941 1.69150 1.79624 1.83401 2.61455 2.71324 2.84008 3.30143 3.37177 3.51755 3.63159 3.66805 3.85108 3.89450 3.95996 4.04846 4.14007 4.14730 4.20223 4.23131 4.29132 4.34940 4.41582 4.57101 4.61000 4.62026 4.62941 4.73053 4.77700 4.84753 4.86737 4.93015 5.08171 5.14872 5.16092 5.21060 5.21877 5.58311 5.61280 5.62355 5.72599 5.91929 6.13443 6.37891 6.44762 6.52661 6.99070 7.07770 7.35190 7.96600 8.07230 9.15213 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.007670 B = 0.003753 C = 0.002714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3649.738778 B = 7458.058391 C =10313.377558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.089 4.089 3 H 0.088 0.912 4 C -0.120 4.120 5 C 0.518 3.482 6 N -0.836 5.836 7 O -0.582 6.582 8 C 0.536 3.464 9 O -0.571 6.571 10 N -0.611 5.611 11 C 0.125 3.875 12 C -0.062 4.062 13 H 0.089 0.911 14 C -0.071 4.071 15 C -0.127 4.127 16 C -0.124 4.124 17 C -0.129 4.129 18 C -0.125 4.125 19 C -0.128 4.128 20 C 0.188 3.812 21 H 0.060 0.940 22 N -0.727 5.727 23 C -0.329 4.329 24 H 0.066 0.934 25 C -0.093 4.093 26 N -0.973 5.973 27 Si 1.121 2.879 28 H -0.287 1.287 29 H -0.274 1.274 30 H -0.294 1.294 31 C 0.086 3.914 32 H 0.066 0.934 33 H 0.080 0.920 34 H 0.051 0.949 35 H 0.119 0.881 36 H 0.110 0.890 37 H 0.418 0.582 38 H 0.408 0.592 39 H 0.073 0.927 40 H 0.076 0.924 41 H 0.118 0.882 42 H 0.142 0.858 43 H 0.146 0.854 44 H 0.140 0.860 45 H 0.121 0.879 46 H 0.364 0.636 47 H 0.247 0.753 48 H 0.063 0.937 49 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.596 -17.910 7.911 19.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.111 4.111 3 H 0.106 0.894 4 C -0.160 4.160 5 C 0.304 3.696 6 N -0.400 5.400 7 O -0.463 6.463 8 C 0.326 3.674 9 O -0.451 6.451 10 N -0.343 5.343 11 C 0.002 3.998 12 C -0.082 4.082 13 H 0.107 0.893 14 C -0.072 4.072 15 C -0.145 4.145 16 C -0.142 4.142 17 C -0.147 4.147 18 C -0.143 4.143 19 C -0.146 4.146 20 C 0.077 3.923 21 H 0.078 0.922 22 N -0.368 5.368 23 C -0.460 4.460 24 H 0.084 0.916 25 C -0.285 4.285 26 N -0.620 5.620 27 Si 0.947 3.053 28 H -0.214 1.214 29 H -0.199 1.199 30 H -0.221 1.221 31 C -0.040 4.040 32 H 0.085 0.915 33 H 0.099 0.901 34 H 0.070 0.930 35 H 0.137 0.863 36 H 0.129 0.871 37 H 0.250 0.750 38 H 0.240 0.760 39 H 0.091 0.909 40 H 0.094 0.906 41 H 0.136 0.864 42 H 0.159 0.841 43 H 0.164 0.836 44 H 0.158 0.842 45 H 0.139 0.861 46 H 0.197 0.803 47 H 0.057 0.943 48 H 0.081 0.919 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.428 -16.405 7.458 18.077 hybrid contribution 0.919 -1.294 0.581 1.690 sum -0.509 -17.699 8.038 19.446 Atomic orbital electron populations 1.21764 0.91775 1.02934 1.03093 1.20956 0.98779 1.00267 0.91125 0.89411 1.21476 1.04130 1.00563 0.89863 1.20673 0.78013 0.84689 0.86249 1.43683 1.59169 1.29930 1.07244 1.90744 1.41766 1.26421 1.87335 1.20581 0.76370 0.86716 0.83746 1.90644 1.55690 1.14714 1.84003 1.48534 1.61403 1.09638 1.14765 1.21945 0.98805 0.95352 0.83675 1.21387 1.00355 0.94991 0.91450 0.89302 1.19577 0.95095 0.98259 0.94243 1.21090 0.96266 0.99375 0.97783 1.21396 1.00333 1.00006 0.92471 1.21457 0.93862 0.99243 1.00137 1.21413 0.97984 0.98405 0.96514 1.21226 0.99700 1.00169 0.93473 1.21367 0.96278 0.83894 0.90769 0.92234 1.42313 1.07421 1.04684 1.82356 1.20310 0.91234 0.91396 1.43057 0.91603 1.26943 1.01634 1.00262 0.99697 1.70958 1.01749 1.35206 1.54114 0.82690 0.72481 0.73367 0.76731 1.21430 1.19932 1.22085 1.23171 1.01385 0.79288 1.00133 0.91489 0.90129 0.93020 0.86270 0.87147 0.75037 0.76022 0.90890 0.90574 0.86399 0.84065 0.83609 0.84195 0.86056 0.80297 0.94288 0.91859 0.90885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.49 8.85 71.98 0.64 -2.86 16 2 C -0.09 -2.29 1.80 -11.54 -0.02 -2.31 16 3 H 0.09 2.49 6.96 -2.39 -0.02 2.47 16 4 C -0.12 -2.28 4.75 29.85 0.14 -2.14 16 5 C 0.52 10.32 7.84 87.66 0.69 11.01 16 6 N -0.84 -8.96 8.87 -173.53 -1.54 -10.50 16 7 O -0.58 -17.03 14.81 -3.05 -0.05 -17.08 16 8 C 0.54 15.86 6.84 87.66 0.60 16.46 16 9 O -0.57 -18.90 16.70 -3.03 -0.05 -18.95 16 10 N -0.61 -18.59 3.33 -811.69 -2.70 -21.29 16 11 C 0.12 3.63 6.34 86.73 0.55 4.18 16 12 C -0.06 -1.96 2.80 -10.35 -0.03 -1.99 16 13 H 0.09 2.82 7.80 -2.39 -0.02 2.80 16 14 C -0.07 -2.22 4.95 -19.87 -0.10 -2.32 16 15 C -0.13 -3.71 8.12 22.27 0.18 -3.53 16 16 C -0.12 -3.14 10.05 22.27 0.22 -2.91 16 17 C -0.13 -3.07 10.05 22.27 0.22 -2.85 16 18 C -0.13 -3.23 10.05 22.27 0.22 -3.01 16 19 C -0.13 -3.79 9.68 22.27 0.22 -3.58 16 20 C 0.19 7.08 3.09 46.38 0.14 7.22 16 21 H 0.06 2.39 7.19 -2.38 -0.02 2.37 16 22 N -0.73 -34.35 5.26 -316.35 -1.66 -36.01 16 23 C -0.33 -17.66 9.97 84.03 0.84 -16.82 16 24 H 0.07 3.49 7.83 -2.91 -0.02 3.47 16 25 C -0.09 -5.25 5.50 84.86 0.47 -4.78 16 26 N -0.97 -59.04 13.70 21.65 0.30 -58.74 16 27 Si 1.12 51.41 29.92 68.60 2.05 53.47 16 28 H -0.29 -12.70 7.11 99.48 0.71 -11.99 16 29 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 30 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 31 C 0.09 2.94 5.86 86.85 0.51 3.45 16 32 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.08 2.17 6.07 -2.39 -0.01 2.15 16 34 H 0.05 1.37 7.96 -2.39 -0.02 1.35 16 35 H 0.12 1.97 8.02 -2.39 -0.02 1.95 16 36 H 0.11 1.79 8.14 -2.38 -0.02 1.77 16 37 H 0.42 1.75 8.83 -92.71 -0.82 0.93 16 38 H 0.41 3.74 8.93 -92.71 -0.83 2.91 16 39 H 0.07 2.12 6.67 -2.39 -0.02 2.10 16 40 H 0.08 2.07 8.14 -2.39 -0.02 2.06 16 41 H 0.12 3.34 7.30 -2.91 -0.02 3.32 16 42 H 0.14 2.81 8.06 -2.91 -0.02 2.78 16 43 H 0.15 2.56 8.06 -2.91 -0.02 2.53 16 44 H 0.14 2.90 8.06 -2.91 -0.02 2.87 16 45 H 0.12 3.43 7.98 -2.91 -0.02 3.41 16 46 H 0.36 17.99 6.57 -92.71 -0.61 17.38 16 47 H 0.25 14.80 6.77 -92.71 -0.63 14.17 16 48 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 49 H 0.07 2.53 7.50 -2.39 -0.02 2.51 16 Total: -1.00 -73.42 399.57 0.72 -72.69 By element: Atomic # 1 Polarization: 44.31 SS G_CDS: -1.12 Total: 43.20 kcal Atomic # 6 Polarization: -12.27 SS G_CDS: 5.49 Total: -6.77 kcal Atomic # 7 Polarization: -120.95 SS G_CDS: -5.61 Total: -126.55 kcal Atomic # 8 Polarization: -35.93 SS G_CDS: -0.10 Total: -36.03 kcal Atomic # 14 Polarization: 51.41 SS G_CDS: 2.05 Total: 53.47 kcal Total: -73.42 0.72 -72.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211649242.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.704 kcal (2) G-P(sol) polarization free energy of solvation -73.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds