Wall clock time and date at job start Wed Apr 1 2020 02:59:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 110.30551 * 2 1 4 4 C 1.54395 * 110.43060 * 237.76283 * 2 1 3 5 5 N 1.48145 * 104.61454 * 217.21687 * 4 2 1 6 6 C 1.34784 * 127.83336 * 219.58574 * 5 4 2 7 7 O 1.21276 * 119.99520 * 180.02562 * 6 5 4 8 8 C 1.50696 * 120.00103 * 359.97438 * 6 5 4 9 9 C 1.50702 * 109.46962 * 180.02562 * 8 6 5 10 10 C 1.38237 * 119.99724 * 269.73204 * 9 8 6 11 11 C 1.38242 * 119.99727 * 179.79109 * 10 9 8 12 12 C 1.38237 * 119.99931 * 0.43347 * 11 10 9 13 13 C 1.38236 * 119.99803 * 359.82089 * 12 11 10 14 14 C 1.38229 * 119.99971 * 89.99949 * 9 8 6 15 15 C 1.48140 * 104.32775 * 39.58831 * 5 4 2 16 16 C 1.54281 * 110.34397 * 122.17674 * 2 1 3 17 17 H 1.09003 * 110.34267 * 0.10023 * 16 2 1 18 18 N 1.46902 * 110.34076 * 237.95476 * 16 2 1 19 19 C 1.46908 * 110.99919 * 154.99858 * 18 16 2 20 20 C 1.50702 * 109.46913 * 179.97438 * 19 18 16 21 21 O 1.21296 * 120.00249 * 0.02562 * 20 19 18 22 22 N 1.34770 * 119.99967 * 179.97438 * 20 19 18 23 23 C 1.37097 * 120.00119 * 180.02562 * 22 20 19 24 24 H 1.08001 * 120.00004 * 0.02562 * 23 22 20 25 25 C 1.38954 * 120.00329 * 180.02562 * 23 22 20 26 26 N 1.31418 * 119.99670 * 359.97438 * 25 23 22 27 27 Si 1.86799 * 120.00356 * 180.02562 * 25 23 22 28 28 H 1.48495 * 109.46932 * 359.97438 * 27 25 23 29 29 H 1.48502 * 109.47212 * 119.99695 * 27 25 23 30 30 H 1.48500 * 109.46750 * 239.99578 * 27 25 23 31 31 H 1.08999 * 109.47069 * 299.29750 * 1 2 3 32 32 H 1.09004 * 109.47187 * 59.29880 * 1 2 3 33 33 H 1.09004 * 109.47207 * 179.30026 * 1 2 3 34 34 H 1.08990 * 110.40604 * 336.00312 * 4 2 1 35 35 H 1.09000 * 110.40401 * 98.43734 * 4 2 1 36 36 H 1.09001 * 109.47305 * 300.00300 * 8 6 5 37 37 H 1.08997 * 109.46834 * 60.00638 * 8 6 5 38 38 H 1.07997 * 120.00468 * 359.97438 * 10 9 8 39 39 H 1.07996 * 120.00043 * 180.27124 * 11 10 9 40 40 H 1.07991 * 120.00044 * 179.83601 * 12 11 10 41 41 H 1.07999 * 119.99492 * 180.02562 * 13 12 11 42 42 H 1.07992 * 120.00325 * 359.97438 * 14 9 8 43 43 H 1.08998 * 110.41105 * 201.63246 * 15 5 4 44 44 H 1.09004 * 110.40870 * 79.19127 * 15 5 4 45 45 H 1.00900 * 110.99872 * 278.94666 * 18 16 2 46 46 H 1.08994 * 109.47175 * 299.99814 * 19 18 16 47 47 H 1.08994 * 109.46905 * 59.99817 * 19 18 16 48 48 H 0.97003 * 120.00014 * 0.02562 * 22 20 19 49 49 H 0.97002 * 119.99636 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9082 1.0223 0.0000 4 6 2.0689 -0.7718 -1.2238 5 7 3.2692 -1.4794 -0.7205 6 6 4.4461 -1.6626 -1.3514 7 8 5.3405 -2.2698 -0.8017 8 6 4.6501 -1.1140 -2.7400 9 6 6.0394 -1.4533 -3.2151 10 6 7.0848 -0.5818 -2.9729 11 6 8.3600 -0.8951 -3.4049 12 6 8.5882 -2.0757 -4.0869 13 6 7.5419 -2.9447 -4.3336 14 6 6.2674 -2.6334 -3.8978 15 6 2.8824 -1.9401 0.6333 16 6 2.0663 -0.7703 1.2244 17 1 1.2398 -1.1503 1.8249 18 7 2.9291 0.0982 2.0363 19 6 2.9679 -0.3555 3.4330 20 6 3.8611 0.5572 4.2331 21 8 4.4109 1.4939 3.6931 22 7 4.0482 0.3334 5.5489 23 6 4.8603 1.1641 6.2769 24 1 5.3499 1.9981 5.7960 25 6 5.0537 0.9330 7.6333 26 7 4.4576 -0.0815 8.2185 27 14 6.1597 2.0653 8.6254 28 1 6.7069 3.1237 7.7392 29 1 5.3738 2.6918 9.7186 30 1 7.2779 1.2800 9.2069 31 1 -0.3633 0.5029 0.8962 32 1 -0.3634 0.5247 -0.8837 33 1 -0.3634 -1.0276 -0.0126 34 1 1.3271 -1.4869 -1.5790 35 1 2.3421 -0.0790 -2.0198 36 1 3.9175 -1.5548 -3.4161 37 1 4.5253 -0.0313 -2.7248 38 1 6.9058 0.3424 -2.4436 39 1 9.1776 -0.2163 -3.2119 40 1 9.5839 -2.3192 -4.4267 41 1 7.7203 -3.8672 -4.8661 42 1 5.4501 -3.3124 -4.0904 43 1 3.7692 -2.1288 1.2384 44 1 2.2675 -2.8377 0.5681 45 1 3.8586 0.1502 1.6472 46 1 1.9609 -0.3357 3.8496 47 1 3.3580 -1.3725 3.4740 48 1 3.6082 -0.4154 5.9808 49 1 4.5922 -0.2426 9.1656 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001214977682.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:56 Heat of formation + Delta-G solvation = -41.962474 kcal Electronic energy + Delta-G solvation = -29535.610061 eV Core-core repulsion = 25462.255130 eV Total energy + Delta-G solvation = -4073.354931 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.49258 -39.35994 -38.30813 -37.71491 -34.59963 -33.76024 -33.06270 -32.60722 -31.19777 -31.04028 -29.34303 -27.67860 -26.56461 -25.93083 -24.17597 -22.74749 -22.65747 -21.67544 -20.25596 -19.49988 -19.12306 -17.86792 -17.32633 -16.98571 -16.33713 -16.09953 -15.73040 -15.43467 -15.19804 -15.02427 -14.65389 -14.47036 -14.07850 -13.90169 -13.71377 -13.54473 -13.47733 -13.24021 -13.02377 -12.79237 -12.69177 -12.41849 -12.23873 -12.09047 -12.05119 -11.59947 -11.53915 -11.34496 -11.17213 -11.13829 -11.07678 -11.03762 -10.86832 -10.32772 -10.20641 -9.99987 -9.50389 -9.05546 -9.02391 -8.88495 -8.43134 -8.03578 -7.93969 -6.40076 -3.80680 1.15737 1.27292 2.51845 2.77141 3.17882 3.28275 3.35805 3.64639 3.92339 4.05729 4.26662 4.32046 4.37875 4.43967 4.61120 4.79127 4.83802 4.85935 4.94173 5.00618 5.06322 5.14076 5.16122 5.20925 5.24005 5.27845 5.34015 5.34665 5.47272 5.52483 5.54024 5.60112 5.76984 5.81401 5.87998 5.88596 5.96072 5.99954 6.02857 6.16459 6.28990 6.31715 6.36149 6.41355 6.84211 7.21173 7.39343 7.57241 7.60965 8.04799 8.08219 8.62904 9.19767 9.55994 10.07403 10.77792 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.009923 B = 0.002402 C = 0.002035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2821.161750 B =11652.010108 C =13759.040182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.099 4.099 3 H 0.097 0.903 4 C 0.102 3.898 5 N -0.623 5.623 6 C 0.534 3.466 7 O -0.528 6.528 8 C -0.097 4.097 9 C -0.067 4.067 10 C -0.103 4.103 11 C -0.118 4.118 12 C -0.121 4.121 13 C -0.121 4.121 14 C -0.106 4.106 15 C 0.073 3.927 16 C 0.077 3.923 17 H 0.095 0.905 18 N -0.656 5.656 19 C 0.048 3.952 20 C 0.441 3.559 21 O -0.583 6.583 22 N -0.564 5.564 23 C -0.297 4.297 24 H 0.103 0.897 25 C 0.021 3.979 26 N -0.902 5.902 27 Si 0.929 3.071 28 H -0.268 1.268 29 H -0.281 1.281 30 H -0.282 1.282 31 H 0.064 0.936 32 H 0.057 0.943 33 H 0.054 0.946 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.101 0.899 37 H 0.104 0.896 38 H 0.122 0.878 39 H 0.122 0.878 40 H 0.120 0.880 41 H 0.120 0.880 42 H 0.118 0.882 43 H 0.083 0.917 44 H 0.072 0.928 45 H 0.352 0.648 46 H 0.087 0.913 47 H 0.044 0.956 48 H 0.392 0.608 49 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.635 -6.057 -25.300 26.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.119 4.119 3 H 0.115 0.885 4 C -0.021 4.021 5 N -0.358 5.358 6 C 0.323 3.677 7 O -0.403 6.403 8 C -0.136 4.136 9 C -0.067 4.067 10 C -0.121 4.121 11 C -0.136 4.136 12 C -0.139 4.139 13 C -0.139 4.139 14 C -0.124 4.124 15 C -0.051 4.051 16 C -0.035 4.035 17 H 0.113 0.887 18 N -0.288 5.288 19 C -0.084 4.084 20 C 0.227 3.773 21 O -0.467 6.467 22 N -0.201 5.201 23 C -0.427 4.427 24 H 0.121 0.879 25 C -0.180 4.180 26 N -0.543 5.543 27 Si 0.756 3.244 28 H -0.192 1.192 29 H -0.207 1.207 30 H -0.208 1.208 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.091 0.909 35 H 0.098 0.902 36 H 0.119 0.881 37 H 0.122 0.878 38 H 0.140 0.860 39 H 0.140 0.860 40 H 0.138 0.862 41 H 0.138 0.862 42 H 0.136 0.864 43 H 0.102 0.898 44 H 0.090 0.910 45 H 0.172 0.828 46 H 0.106 0.894 47 H 0.062 0.938 48 H 0.225 0.775 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.125 -5.355 -25.094 26.166 hybrid contribution 0.729 -0.835 0.915 1.437 sum -4.397 -6.189 -24.180 25.344 Atomic orbital electron populations 1.21779 0.93753 1.01752 1.02437 1.22178 0.96053 1.00921 0.92731 0.88495 1.22592 0.86720 0.95479 0.97314 1.48957 1.13032 1.56249 1.17608 1.20169 0.80325 0.79858 0.87357 1.90766 1.40899 1.41295 1.67384 1.20638 0.95852 1.03224 0.93918 1.19273 0.93991 0.95227 0.98256 1.21044 0.92632 0.99581 0.98851 1.21136 0.96826 0.97280 0.98389 1.21148 0.98935 0.94663 0.99195 1.21082 0.92896 0.99461 1.00483 1.20944 0.97248 0.95929 0.98309 1.23176 1.00024 0.97928 0.84010 1.22687 0.96042 0.90542 0.94214 0.88694 1.60246 1.17552 1.50045 1.00941 1.21741 1.00687 0.96615 0.89398 1.19788 0.86323 0.88028 0.83206 1.90526 1.52828 1.32879 1.70474 1.41863 1.43010 1.28275 1.06906 1.19750 1.22956 1.09246 0.90759 0.87898 1.25266 0.98311 0.97394 0.97036 1.69626 1.43648 1.28887 1.12185 0.85801 0.79397 0.79813 0.79354 1.19219 1.20739 1.20766 0.91687 0.92410 0.92675 0.90881 0.90215 0.88107 0.87813 0.86025 0.85966 0.86198 0.86166 0.86406 0.89850 0.90954 0.82761 0.89444 0.93815 0.77467 0.91945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.00 8.92 37.16 0.33 -0.67 16 2 C -0.10 -0.90 3.44 -89.22 -0.31 -1.21 16 3 H 0.10 1.06 7.95 -51.93 -0.41 0.65 16 4 C 0.10 0.78 6.46 -2.41 -0.02 0.77 16 5 N -0.62 -6.88 3.32 -169.31 -0.56 -7.45 16 6 C 0.53 6.87 7.91 -10.98 -0.09 6.79 16 7 O -0.53 -9.29 16.30 5.56 0.09 -9.20 16 8 C -0.10 -0.88 4.81 -29.04 -0.14 -1.02 16 9 C -0.07 -0.73 4.37 -104.62 -0.46 -1.19 16 10 C -0.10 -1.16 9.70 -39.58 -0.38 -1.54 16 11 C -0.12 -1.23 10.05 -39.58 -0.40 -1.63 16 12 C -0.12 -1.18 10.05 -39.58 -0.40 -1.57 16 13 C -0.12 -1.17 10.05 -39.58 -0.40 -1.57 16 14 C -0.11 -1.09 9.70 -39.58 -0.38 -1.48 16 15 C 0.07 0.86 6.49 -2.41 -0.02 0.84 16 16 C 0.08 0.88 3.03 -66.31 -0.20 0.68 16 17 H 0.10 0.98 7.39 -51.93 -0.38 0.60 16 18 N -0.66 -10.49 5.80 -106.51 -0.62 -11.11 16 19 C 0.05 0.85 6.02 -4.97 -0.03 0.82 16 20 C 0.44 10.61 7.82 -10.99 -0.09 10.52 16 21 O -0.58 -16.17 15.78 5.54 0.09 -16.08 16 22 N -0.56 -14.55 5.29 -10.96 -0.06 -14.61 16 23 C -0.30 -8.45 9.68 -14.93 -0.14 -8.60 16 24 H 0.10 3.08 7.16 -52.49 -0.38 2.70 16 25 C 0.02 0.58 5.50 -17.46 -0.10 0.49 16 26 N -0.90 -24.88 13.05 55.50 0.72 -24.16 16 27 Si 0.93 21.41 29.55 -169.99 -5.02 16.39 16 28 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 29 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 30 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.05 0.34 8.13 -51.93 -0.42 -0.08 16 34 H 0.07 0.44 7.85 -51.93 -0.41 0.03 16 35 H 0.08 0.48 7.30 -51.93 -0.38 0.10 16 36 H 0.10 0.65 8.08 -51.93 -0.42 0.24 16 37 H 0.10 0.78 7.89 -51.93 -0.41 0.37 16 38 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 39 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 40 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 41 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 42 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 43 H 0.08 1.22 7.74 -51.93 -0.40 0.82 16 44 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.35 6.34 8.13 -39.29 -0.32 6.02 16 46 H 0.09 1.38 8.07 -51.93 -0.42 0.97 16 47 H 0.04 0.72 8.12 -51.93 -0.42 0.29 16 48 H 0.39 9.64 7.90 -40.82 -0.32 9.32 16 49 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 409.15 15.07 6.17 6.17 Total: -1.00 -35.32 409.15 -10.02 -45.34 By element: Atomic # 1 Polarization: 21.90 SS G_CDS: -7.61 Total: 14.28 kcal Atomic # 6 Polarization: 3.63 SS G_CDS: -3.21 Total: 0.43 kcal Atomic # 7 Polarization: -56.81 SS G_CDS: -0.51 Total: -57.32 kcal Atomic # 8 Polarization: -25.46 SS G_CDS: 0.18 Total: -25.28 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -35.32 -10.02 -45.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001214977682.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.377 kcal (2) G-P(sol) polarization free energy of solvation -35.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds