Wall clock time and date at job start Wed Apr 1 2020 02:59:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 110.30551 * 2 1 4 4 C 1.54395 * 110.43060 * 237.76283 * 2 1 3 5 5 N 1.48145 * 104.61454 * 217.21687 * 4 2 1 6 6 C 1.34784 * 127.83336 * 219.58574 * 5 4 2 7 7 O 1.21276 * 119.99520 * 180.02562 * 6 5 4 8 8 C 1.50696 * 120.00103 * 359.97438 * 6 5 4 9 9 C 1.50702 * 109.46962 * 180.02562 * 8 6 5 10 10 C 1.38237 * 119.99724 * 269.73204 * 9 8 6 11 11 C 1.38242 * 119.99727 * 179.79109 * 10 9 8 12 12 C 1.38237 * 119.99931 * 0.43347 * 11 10 9 13 13 C 1.38236 * 119.99803 * 359.82089 * 12 11 10 14 14 C 1.38229 * 119.99971 * 89.99949 * 9 8 6 15 15 C 1.48140 * 104.32775 * 39.58831 * 5 4 2 16 16 C 1.54281 * 110.34397 * 122.17674 * 2 1 3 17 17 H 1.09003 * 110.34267 * 0.10023 * 16 2 1 18 18 N 1.46902 * 110.34076 * 237.95476 * 16 2 1 19 19 C 1.46908 * 110.99919 * 154.99858 * 18 16 2 20 20 C 1.50702 * 109.46913 * 179.97438 * 19 18 16 21 21 O 1.21296 * 120.00249 * 0.02562 * 20 19 18 22 22 N 1.34770 * 119.99967 * 179.97438 * 20 19 18 23 23 C 1.37097 * 120.00119 * 180.02562 * 22 20 19 24 24 H 1.08001 * 120.00004 * 0.02562 * 23 22 20 25 25 C 1.38954 * 120.00329 * 180.02562 * 23 22 20 26 26 N 1.31418 * 119.99670 * 359.97438 * 25 23 22 27 27 Si 1.86799 * 120.00356 * 180.02562 * 25 23 22 28 28 H 1.48495 * 109.46932 * 359.97438 * 27 25 23 29 29 H 1.48502 * 109.47212 * 119.99695 * 27 25 23 30 30 H 1.48500 * 109.46750 * 239.99578 * 27 25 23 31 31 H 1.08999 * 109.47069 * 299.29750 * 1 2 3 32 32 H 1.09004 * 109.47187 * 59.29880 * 1 2 3 33 33 H 1.09004 * 109.47207 * 179.30026 * 1 2 3 34 34 H 1.08990 * 110.40604 * 336.00312 * 4 2 1 35 35 H 1.09000 * 110.40401 * 98.43734 * 4 2 1 36 36 H 1.09001 * 109.47305 * 300.00300 * 8 6 5 37 37 H 1.08997 * 109.46834 * 60.00638 * 8 6 5 38 38 H 1.07997 * 120.00468 * 359.97438 * 10 9 8 39 39 H 1.07996 * 120.00043 * 180.27124 * 11 10 9 40 40 H 1.07991 * 120.00044 * 179.83601 * 12 11 10 41 41 H 1.07999 * 119.99492 * 180.02562 * 13 12 11 42 42 H 1.07992 * 120.00325 * 359.97438 * 14 9 8 43 43 H 1.08998 * 110.41105 * 201.63246 * 15 5 4 44 44 H 1.09004 * 110.40870 * 79.19127 * 15 5 4 45 45 H 1.00900 * 110.99872 * 278.94666 * 18 16 2 46 46 H 1.08994 * 109.47175 * 299.99814 * 19 18 16 47 47 H 1.08994 * 109.46905 * 59.99817 * 19 18 16 48 48 H 0.97003 * 120.00014 * 0.02562 * 22 20 19 49 49 H 0.97002 * 119.99636 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9082 1.0223 0.0000 4 6 2.0689 -0.7718 -1.2238 5 7 3.2692 -1.4794 -0.7205 6 6 4.4461 -1.6626 -1.3514 7 8 5.3405 -2.2698 -0.8017 8 6 4.6501 -1.1140 -2.7400 9 6 6.0394 -1.4533 -3.2151 10 6 7.0848 -0.5818 -2.9729 11 6 8.3600 -0.8951 -3.4049 12 6 8.5882 -2.0757 -4.0869 13 6 7.5419 -2.9447 -4.3336 14 6 6.2674 -2.6334 -3.8978 15 6 2.8824 -1.9401 0.6333 16 6 2.0663 -0.7703 1.2244 17 1 1.2398 -1.1503 1.8249 18 7 2.9291 0.0982 2.0363 19 6 2.9679 -0.3555 3.4330 20 6 3.8611 0.5572 4.2331 21 8 4.4109 1.4939 3.6931 22 7 4.0482 0.3334 5.5489 23 6 4.8603 1.1641 6.2769 24 1 5.3499 1.9981 5.7960 25 6 5.0537 0.9330 7.6333 26 7 4.4576 -0.0815 8.2185 27 14 6.1597 2.0653 8.6254 28 1 6.7069 3.1237 7.7392 29 1 5.3738 2.6918 9.7186 30 1 7.2779 1.2800 9.2069 31 1 -0.3633 0.5029 0.8962 32 1 -0.3634 0.5247 -0.8837 33 1 -0.3634 -1.0276 -0.0126 34 1 1.3271 -1.4869 -1.5790 35 1 2.3421 -0.0790 -2.0198 36 1 3.9175 -1.5548 -3.4161 37 1 4.5253 -0.0313 -2.7248 38 1 6.9058 0.3424 -2.4436 39 1 9.1776 -0.2163 -3.2119 40 1 9.5839 -2.3192 -4.4267 41 1 7.7203 -3.8672 -4.8661 42 1 5.4501 -3.3124 -4.0904 43 1 3.7692 -2.1288 1.2384 44 1 2.2675 -2.8377 0.5681 45 1 3.8586 0.1502 1.6472 46 1 1.9609 -0.3357 3.8496 47 1 3.3580 -1.3725 3.4740 48 1 3.6082 -0.4154 5.9808 49 1 4.5922 -0.2426 9.1656 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001214977682.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:55 Heat of formation + Delta-G solvation = -66.415698 kcal Electronic energy + Delta-G solvation = -29536.670433 eV Core-core repulsion = 25462.255130 eV Total energy + Delta-G solvation = -4074.415302 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.39589 -40.33554 -39.89201 -38.83938 -36.18728 -35.46286 -33.89646 -33.42658 -33.25477 -31.78429 -30.36497 -28.73283 -27.57934 -27.03361 -25.82868 -23.65565 -23.49861 -22.44380 -21.36702 -20.82999 -20.30211 -19.91166 -18.29685 -17.82749 -17.64066 -17.25320 -16.77331 -16.55904 -16.39222 -16.20201 -15.92411 -15.85589 -15.54688 -15.21850 -14.83887 -14.63144 -14.28393 -14.10428 -14.01546 -13.78627 -13.65274 -13.54275 -13.47165 -13.15126 -13.07221 -12.95374 -12.89130 -12.79636 -12.44386 -12.14563 -12.06728 -11.97009 -11.89041 -11.81811 -11.62838 -11.54627 -11.01030 -10.39430 -10.05246 -9.96121 -9.81756 -9.65006 -9.25970 -8.49827 -5.98704 0.39239 0.50262 1.34123 1.39228 1.53780 1.58364 1.94412 2.01344 2.26696 2.86010 2.88805 3.17035 3.40553 3.56093 3.58895 3.69596 3.91973 4.00180 4.13365 4.14954 4.17978 4.26082 4.28939 4.34870 4.38742 4.44712 4.49617 4.54335 4.58157 4.62540 4.68993 4.71927 4.76533 4.82976 4.95700 5.09644 5.14209 5.19217 5.20487 5.37501 5.39088 5.51198 5.54626 5.60880 5.64540 5.89237 6.09893 6.11225 6.24398 6.53881 6.56650 7.09327 7.11846 7.52203 8.07748 8.67870 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.009923 B = 0.002402 C = 0.002035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2821.161750 B =11652.010108 C =13759.040182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.094 4.094 3 H 0.076 0.924 4 C 0.104 3.896 5 N -0.623 5.623 6 C 0.527 3.473 7 O -0.588 6.588 8 C -0.088 4.088 9 C -0.083 4.083 10 C -0.128 4.128 11 C -0.134 4.134 12 C -0.130 4.130 13 C -0.129 4.129 14 C -0.119 4.119 15 C 0.073 3.927 16 C 0.077 3.923 17 H 0.113 0.887 18 N -0.667 5.667 19 C 0.063 3.937 20 C 0.436 3.564 21 O -0.625 6.625 22 N -0.572 5.572 23 C -0.334 4.334 24 H 0.077 0.923 25 C -0.013 4.013 26 N -0.920 5.920 27 Si 0.993 3.007 28 H -0.274 1.274 29 H -0.268 1.268 30 H -0.271 1.271 31 H 0.051 0.949 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.103 0.897 35 H 0.102 0.898 36 H 0.134 0.866 37 H 0.120 0.880 38 H 0.119 0.881 39 H 0.133 0.867 40 H 0.141 0.859 41 H 0.143 0.857 42 H 0.135 0.865 43 H 0.046 0.954 44 H 0.096 0.904 45 H 0.336 0.664 46 H 0.113 0.887 47 H 0.059 0.941 48 H 0.397 0.603 49 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.438 -6.800 -26.650 28.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.114 4.114 3 H 0.094 0.906 4 C -0.018 4.018 5 N -0.357 5.357 6 C 0.318 3.682 7 O -0.468 6.468 8 C -0.127 4.127 9 C -0.083 4.083 10 C -0.146 4.146 11 C -0.152 4.152 12 C -0.148 4.148 13 C -0.147 4.147 14 C -0.137 4.137 15 C -0.051 4.051 16 C -0.034 4.034 17 H 0.131 0.869 18 N -0.297 5.297 19 C -0.069 4.069 20 C 0.223 3.777 21 O -0.512 6.512 22 N -0.210 5.210 23 C -0.464 4.464 24 H 0.095 0.905 25 C -0.213 4.213 26 N -0.560 5.560 27 Si 0.817 3.183 28 H -0.199 1.199 29 H -0.193 1.193 30 H -0.196 1.196 31 H 0.070 0.930 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.121 0.879 35 H 0.120 0.880 36 H 0.152 0.848 37 H 0.138 0.862 38 H 0.137 0.863 39 H 0.151 0.849 40 H 0.159 0.841 41 H 0.161 0.839 42 H 0.152 0.848 43 H 0.065 0.935 44 H 0.114 0.886 45 H 0.154 0.846 46 H 0.131 0.869 47 H 0.077 0.923 48 H 0.231 0.769 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -7.004 -6.107 -26.454 28.038 hybrid contribution 1.266 -0.618 1.314 1.926 sum -5.738 -6.725 -25.140 26.649 Atomic orbital electron populations 1.21742 0.91698 1.02962 1.02697 1.22142 0.97574 0.99570 0.92110 0.90565 1.22850 0.85747 0.96187 0.97011 1.49077 1.13585 1.55738 1.17266 1.20847 0.79895 0.79051 0.88443 1.90734 1.42886 1.44175 1.69002 1.20683 0.95812 1.04206 0.92005 1.19549 0.94808 0.95518 0.98427 1.21249 0.93508 1.00115 0.99705 1.21410 0.97015 0.98103 0.98665 1.21474 1.00149 0.94342 0.98860 1.21451 0.92732 1.00247 1.00237 1.21260 0.98188 0.95997 0.98221 1.23131 0.98798 0.98978 0.84219 1.22880 0.95416 0.90296 0.94794 0.86923 1.60315 1.17095 1.51832 1.00475 1.21612 1.00243 0.95349 0.89681 1.20915 0.85890 0.88008 0.82872 1.90490 1.54499 1.34979 1.71207 1.41933 1.43130 1.28263 1.07645 1.19684 1.24864 1.09927 0.91883 0.90528 1.26061 0.99206 0.98699 0.97336 1.69679 1.43983 1.29554 1.12826 0.84868 0.77842 0.77827 0.77777 1.19906 1.19254 1.19608 0.92964 0.90661 0.90984 0.87874 0.88007 0.84769 0.86174 0.86278 0.84873 0.84104 0.83913 0.84750 0.93484 0.88553 0.84575 0.86869 0.92335 0.76930 0.91231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.45 8.92 71.98 0.64 -0.81 16 2 C -0.09 -1.49 3.44 -9.89 -0.03 -1.53 16 3 H 0.08 1.57 7.95 -2.39 -0.02 1.55 16 4 C 0.10 1.24 6.46 86.54 0.56 1.80 16 5 N -0.62 -12.88 3.32 -807.97 -2.68 -15.56 16 6 C 0.53 13.36 7.91 87.65 0.69 14.05 16 7 O -0.59 -21.46 16.30 -3.02 -0.05 -21.51 16 8 C -0.09 -1.48 4.81 29.10 0.14 -1.34 16 9 C -0.08 -1.78 4.37 -19.87 -0.09 -1.87 16 10 C -0.13 -2.97 9.70 22.27 0.22 -2.75 16 11 C -0.13 -2.85 10.05 22.27 0.22 -2.62 16 12 C -0.13 -2.46 10.05 22.27 0.22 -2.24 16 13 C -0.13 -2.36 10.05 22.27 0.22 -2.14 16 14 C -0.12 -2.34 9.70 22.27 0.22 -2.12 16 15 C 0.07 1.65 6.49 86.54 0.56 2.21 16 16 C 0.08 1.64 3.03 45.82 0.14 1.78 16 17 H 0.11 2.03 7.39 -2.39 -0.02 2.01 16 18 N -0.67 -21.40 5.80 -490.88 -2.85 -24.25 16 19 C 0.06 2.24 6.02 85.56 0.52 2.75 16 20 C 0.44 21.59 7.82 87.66 0.69 22.27 16 21 O -0.63 -36.19 15.78 -3.08 -0.05 -36.24 16 22 N -0.57 -30.40 5.29 -306.98 -1.62 -32.02 16 23 C -0.33 -19.58 9.68 84.04 0.81 -18.76 16 24 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 25 C -0.01 -0.73 5.50 84.93 0.47 -0.26 16 26 N -0.92 -50.59 13.05 21.67 0.28 -50.31 16 27 Si 0.99 44.03 29.55 68.60 2.03 46.06 16 28 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 29 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 30 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 31 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.07 0.59 8.14 -2.38 -0.02 0.57 16 33 H 0.07 0.57 8.13 -2.38 -0.02 0.55 16 34 H 0.10 0.72 7.85 -2.39 -0.02 0.70 16 35 H 0.10 0.82 7.30 -2.39 -0.02 0.80 16 36 H 0.13 1.31 8.08 -2.39 -0.02 1.29 16 37 H 0.12 1.59 7.89 -2.39 -0.02 1.57 16 38 H 0.12 2.65 8.06 -2.91 -0.02 2.63 16 39 H 0.13 2.34 8.06 -2.91 -0.02 2.32 16 40 H 0.14 1.93 8.06 -2.92 -0.02 1.91 16 41 H 0.14 1.85 8.06 -2.91 -0.02 1.82 16 42 H 0.13 2.06 8.06 -2.91 -0.02 2.04 16 43 H 0.05 1.42 7.74 -2.39 -0.02 1.40 16 44 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 45 H 0.34 12.60 8.13 -89.69 -0.73 11.87 16 46 H 0.11 3.42 8.07 -2.39 -0.02 3.40 16 47 H 0.06 1.91 8.12 -2.39 -0.02 1.89 16 48 H 0.40 19.90 7.90 -92.71 -0.73 19.16 16 49 H 0.28 14.24 8.31 -92.71 -0.77 13.47 16 Total: -1.00 -80.98 409.15 0.77 -80.21 By element: Atomic # 1 Polarization: 45.67 SS G_CDS: -0.49 Total: 45.18 kcal Atomic # 6 Polarization: 2.23 SS G_CDS: 6.20 Total: 8.43 kcal Atomic # 7 Polarization: -115.26 SS G_CDS: -6.87 Total: -122.13 kcal Atomic # 8 Polarization: -57.65 SS G_CDS: -0.10 Total: -57.75 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -80.98 0.77 -80.21 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001214977682.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.796 kcal (2) G-P(sol) polarization free energy of solvation -80.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds