Wall clock time and date at job start Wed Apr 1 2020 03:02:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.46841 * 2 1 4 4 N 1.46498 * 109.47249 * 119.99556 * 2 1 3 5 5 C 1.34773 * 120.00449 * 275.00498 * 4 2 1 6 6 O 1.21552 * 120.00033 * 359.97438 * 5 4 2 7 7 C 1.47843 * 120.00029 * 180.02562 * 5 4 2 8 8 C 1.39583 * 120.14314 * 180.02562 * 7 5 4 9 9 C 1.37956 * 119.84920 * 180.02562 * 8 7 5 10 10 C 1.38355 * 120.14859 * 359.97438 * 9 8 7 11 11 C 1.38364 * 120.29127 * 0.27467 * 10 9 8 12 12 C 1.37953 * 120.14469 * 359.44923 * 11 10 9 13 13 C 1.50701 * 109.47466 * 240.00083 * 2 1 3 14 14 O 1.21282 * 119.99955 * 266.66760 * 13 2 1 15 15 N 1.34780 * 119.99697 * 86.66239 * 13 2 1 16 16 C 1.47016 * 125.65376 * 4.74102 * 15 13 2 17 17 C 1.54331 * 107.26927 * 178.84786 * 16 15 13 18 18 H 1.08998 * 110.66887 * 96.52142 * 17 16 15 19 19 C 1.52995 * 110.85272 * 219.66969 * 17 16 15 20 20 C 1.55155 * 103.01986 * 338.13905 * 17 16 15 21 21 H 1.09002 * 111.00694 * 277.23224 * 20 17 16 22 22 N 1.46500 * 111.00649 * 153.38002 * 20 17 16 23 23 C 1.36931 * 120.00091 * 161.35130 * 22 20 17 24 24 H 1.07997 * 120.00306 * 359.97438 * 23 22 20 25 25 C 1.38810 * 120.00149 * 180.02562 * 23 22 20 26 26 N 1.31621 * 119.99924 * 359.97438 * 25 23 22 27 27 Si 1.86806 * 120.00299 * 179.97438 * 25 23 22 28 28 H 1.48499 * 109.46954 * 59.99419 * 27 25 23 29 29 H 1.48503 * 109.47155 * 179.97438 * 27 25 23 30 30 H 1.48496 * 109.47026 * 299.99899 * 27 25 23 31 31 C 1.47427 * 125.64335 * 185.04497 * 15 13 2 32 32 H 1.09000 * 109.47407 * 297.20230 * 1 2 3 33 33 H 1.08999 * 109.46868 * 57.20254 * 1 2 3 34 34 H 1.08998 * 109.46793 * 177.20189 * 1 2 3 35 35 H 0.97004 * 119.99443 * 95.00606 * 4 2 1 36 36 H 1.07995 * 120.07173 * 359.97438 * 8 7 5 37 37 H 1.08000 * 119.92400 * 180.02562 * 9 8 7 38 38 H 1.08005 * 119.85173 * 180.02562 * 10 9 8 39 39 H 1.08001 * 119.92539 * 179.70618 * 11 10 9 40 40 H 1.07995 * 120.07407 * 180.24893 * 12 11 10 41 41 H 1.09002 * 109.87912 * 298.39073 * 16 15 13 42 42 H 1.09000 * 109.88446 * 59.55097 * 16 15 13 43 43 H 1.08995 * 109.47747 * 173.69132 * 19 17 16 44 44 H 1.08998 * 109.47269 * 293.69567 * 19 17 16 45 45 H 1.09004 * 109.47048 * 53.69223 * 19 17 16 46 46 H 0.97001 * 119.99963 * 341.35269 * 22 20 17 47 47 H 0.96999 * 119.99928 * 180.02562 * 26 25 23 48 48 H 1.08997 * 110.36882 * 322.92926 * 31 15 13 49 49 H 1.08995 * 110.36611 * 85.14405 * 31 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 2.1470 -0.0182 2.3572 6 8 1.8583 1.1613 2.4117 7 6 2.6404 -0.7150 3.5641 8 6 2.7743 -0.0217 4.7682 9 6 3.2358 -0.6778 5.8906 10 6 3.5651 -2.0199 5.8248 11 6 3.4395 -2.7117 4.6331 12 6 2.9739 -2.0690 3.5047 13 6 2.0324 -0.7104 -1.2304 14 8 2.2922 -1.8941 -1.1837 15 7 2.1930 -0.0302 -2.3829 16 6 2.0116 1.4185 -2.5553 17 6 2.3301 1.7480 -4.0290 18 1 1.4153 1.7913 -4.6199 19 6 3.1052 3.0626 -4.1380 20 6 3.2134 0.5517 -4.4716 21 1 4.2516 0.7017 -4.1752 22 7 3.1090 0.3277 -5.9156 23 6 4.0672 -0.4029 -6.5662 24 1 4.9001 -0.8136 -6.0149 25 6 3.9686 -0.6146 -7.9345 26 7 2.9538 -0.1136 -8.6065 27 14 5.2761 -1.6106 -8.8222 28 1 5.3286 -2.9800 -8.2500 29 1 4.9415 -1.6907 -10.2668 30 1 6.5972 -0.9535 -8.6552 31 6 2.5735 -0.6167 -3.6808 32 1 -0.3634 0.4698 0.9140 33 1 -0.3633 0.5567 -0.8638 34 1 -0.3633 -1.0264 -0.0502 35 1 2.2491 -1.6317 1.1526 36 1 2.5180 1.0261 4.8207 37 1 3.3395 -0.1426 6.8230 38 1 3.9255 -2.5289 6.7066 39 1 3.7027 -3.7582 4.5873 40 1 2.8725 -2.6111 2.5762 41 1 0.9819 1.6930 -2.3263 42 1 2.6957 1.9583 -1.9005 43 1 3.4150 3.2172 -5.1714 44 1 2.4668 3.8879 -3.8227 45 1 3.9859 3.0193 -3.4972 46 1 2.3612 0.6969 -6.4108 47 1 2.8847 -0.2619 -9.5626 48 1 3.2974 -1.4188 -3.5370 49 1 1.6919 -0.9911 -4.2010 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001216687119.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:41 Heat of formation + Delta-G solvation = -31.377266 kcal Electronic energy + Delta-G solvation = -29757.788245 eV Core-core repulsion = 25684.892324 eV Total energy + Delta-G solvation = -4072.895922 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.78996 -39.89131 -38.58509 -37.70212 -35.16474 -34.24048 -32.61153 -32.11807 -31.32037 -30.79450 -30.21698 -27.75643 -26.28369 -25.16636 -24.22337 -23.28014 -22.75641 -21.48732 -20.64495 -19.98872 -19.56967 -18.44129 -17.24297 -17.00040 -16.58667 -16.21462 -15.97897 -15.56105 -15.21609 -14.86184 -14.70103 -14.54240 -14.22362 -14.01259 -13.72741 -13.69656 -13.24737 -13.19611 -13.04791 -12.96214 -12.81406 -12.48140 -12.41998 -12.09041 -12.04314 -11.69855 -11.65685 -11.48041 -11.15109 -11.05973 -10.79956 -10.68130 -10.30527 -10.25245 -9.97644 -9.86648 -9.77677 -9.48117 -9.39184 -9.26559 -9.03262 -8.46851 -7.10984 -5.86635 -3.17425 0.47950 0.97088 2.43261 2.58547 2.71507 3.24202 3.40191 3.44981 3.45728 3.52652 4.27732 4.37695 4.45379 4.51244 4.54399 4.73222 4.76973 4.88982 4.89924 4.97886 5.05583 5.09099 5.19704 5.38293 5.39465 5.45789 5.52976 5.57711 5.58890 5.62098 5.78761 5.81075 5.90517 5.91978 5.95721 5.99469 6.04039 6.07351 6.15227 6.21855 6.33811 6.41105 6.47390 6.53204 6.54544 6.84888 7.21994 7.61235 7.62706 7.90571 8.12551 8.30852 9.42973 9.95473 10.30571 11.35114 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.017297 B = 0.002114 C = 0.001988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.398703 B =13238.800601 C =14082.958278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.129 3.871 3 H 0.110 0.890 4 N -0.709 5.709 5 C 0.562 3.438 6 O -0.537 6.537 7 C -0.134 4.134 8 C -0.059 4.059 9 C -0.130 4.130 10 C -0.095 4.095 11 C -0.127 4.127 12 C -0.084 4.084 13 C 0.523 3.477 14 O -0.544 6.544 15 N -0.605 5.605 16 C 0.102 3.898 17 C -0.112 4.112 18 H 0.086 0.914 19 C -0.135 4.135 20 C 0.177 3.823 21 H 0.065 0.935 22 N -0.709 5.709 23 C -0.248 4.248 24 H 0.072 0.928 25 C -0.008 4.008 26 N -0.930 5.930 27 Si 0.909 3.091 28 H -0.285 1.285 29 H -0.291 1.291 30 H -0.285 1.285 31 C 0.081 3.919 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.410 0.590 36 H 0.137 0.863 37 H 0.130 0.870 38 H 0.127 0.873 39 H 0.130 0.870 40 H 0.129 0.871 41 H 0.067 0.933 42 H 0.069 0.931 43 H 0.069 0.931 44 H 0.050 0.950 45 H 0.052 0.948 46 H 0.387 0.613 47 H 0.257 0.743 48 H 0.072 0.928 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.091 1.175 26.773 26.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.020 3.980 3 H 0.127 0.873 4 N -0.363 5.363 5 C 0.350 3.650 6 O -0.415 6.415 7 C -0.137 4.137 8 C -0.078 4.078 9 C -0.148 4.148 10 C -0.113 4.113 11 C -0.145 4.145 12 C -0.103 4.103 13 C 0.309 3.691 14 O -0.422 6.422 15 N -0.338 5.338 16 C -0.021 4.021 17 C -0.132 4.132 18 H 0.105 0.895 19 C -0.193 4.193 20 C 0.065 3.935 21 H 0.083 0.917 22 N -0.349 5.349 23 C -0.379 4.379 24 H 0.090 0.910 25 C -0.204 4.204 26 N -0.577 5.577 27 Si 0.739 3.261 28 H -0.211 1.211 29 H -0.216 1.216 30 H -0.211 1.211 31 C -0.044 4.044 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.084 0.916 35 H 0.248 0.752 36 H 0.154 0.846 37 H 0.147 0.853 38 H 0.145 0.855 39 H 0.148 0.852 40 H 0.147 0.853 41 H 0.085 0.915 42 H 0.087 0.913 43 H 0.088 0.912 44 H 0.069 0.931 45 H 0.071 0.929 46 H 0.222 0.778 47 H 0.067 0.933 48 H 0.091 0.909 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.018 1.257 26.741 26.941 hybrid contribution 0.488 -1.007 -0.788 1.369 sum -2.530 0.250 25.953 26.078 Atomic orbital electron populations 1.22052 0.92395 1.03331 1.03582 1.20797 0.96040 0.97897 0.83228 0.87269 1.45737 1.67116 1.14938 1.08541 1.18272 0.77409 0.86421 0.82919 1.90770 1.50338 1.15372 1.85006 1.19912 1.04991 0.94525 0.94278 1.21303 0.95015 1.00499 0.91007 1.21179 1.00120 0.94892 0.98596 1.21413 0.97400 0.94534 0.97965 1.21150 1.00179 1.00503 0.92684 1.21421 0.96383 0.93400 0.99088 1.20106 0.78210 0.87061 0.83704 1.90685 1.51713 1.15500 1.84306 1.48483 1.66905 1.09119 1.09340 1.22237 1.00948 0.80668 0.98257 1.22460 1.00414 0.96742 0.93551 0.89527 1.21680 0.99296 0.95252 1.03070 1.21376 0.96465 0.89785 0.85914 0.91705 1.42265 1.29104 1.62982 1.00548 1.19185 1.02350 1.25635 0.90745 0.91049 1.24762 0.98242 1.00913 0.96517 1.69646 1.30921 1.49292 1.07830 0.86253 0.81060 0.80045 0.78733 1.21121 1.21635 1.21137 1.23505 1.00294 0.99596 0.81046 0.90755 0.90722 0.91575 0.75227 0.84553 0.85251 0.85523 0.85229 0.85325 0.91459 0.91263 0.91213 0.93073 0.92851 0.77822 0.93291 0.90914 0.91198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.63 9.47 37.16 0.35 -1.28 16 2 C 0.13 1.57 2.55 -69.08 -0.18 1.39 16 3 H 0.11 1.33 6.63 -51.93 -0.34 0.98 16 4 N -0.71 -8.27 5.01 -55.88 -0.28 -8.55 16 5 C 0.56 6.84 7.74 -12.33 -0.10 6.74 16 6 O -0.54 -7.86 16.01 5.32 0.09 -7.78 16 7 C -0.13 -1.36 5.87 -104.97 -0.62 -1.98 16 8 C -0.06 -0.54 9.60 -39.18 -0.38 -0.91 16 9 C -0.13 -0.90 10.03 -39.64 -0.40 -1.30 16 10 C -0.09 -0.60 10.04 -39.49 -0.40 -1.00 16 11 C -0.13 -0.89 10.03 -39.64 -0.40 -1.28 16 12 C -0.08 -0.71 9.54 -39.19 -0.37 -1.09 16 13 C 0.52 7.88 7.04 -10.98 -0.08 7.80 16 14 O -0.54 -9.77 16.27 5.56 0.09 -9.68 16 15 N -0.61 -9.17 3.33 -170.52 -0.57 -9.73 16 16 C 0.10 1.28 5.73 -3.06 -0.02 1.26 16 17 C -0.11 -1.62 3.16 -88.79 -0.28 -1.90 16 18 H 0.09 1.29 7.99 -51.93 -0.42 0.87 16 19 C -0.14 -1.77 9.16 37.15 0.34 -1.43 16 20 C 0.18 3.29 3.14 -65.78 -0.21 3.08 16 21 H 0.07 1.25 8.04 -51.93 -0.42 0.83 16 22 N -0.71 -16.60 5.28 -51.35 -0.27 -16.87 16 23 C -0.25 -6.59 9.98 -15.06 -0.15 -6.74 16 24 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 25 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 26 N -0.93 -27.01 13.06 55.49 0.72 -26.29 16 27 Si 0.91 21.90 29.55 -169.99 -5.02 16.88 16 28 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 29 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 30 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 31 C 0.08 1.47 6.62 -2.53 -0.02 1.45 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.07 0.71 7.72 -51.93 -0.40 0.31 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.41 4.49 5.84 -40.82 -0.24 4.26 16 36 H 0.14 1.22 7.65 -52.49 -0.40 0.82 16 37 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 38 H 0.13 0.50 8.06 -52.48 -0.42 0.08 16 39 H 0.13 0.64 8.06 -52.49 -0.42 0.21 16 40 H 0.13 0.95 6.41 -52.49 -0.34 0.61 16 41 H 0.07 0.71 7.72 -51.93 -0.40 0.31 16 42 H 0.07 0.78 7.53 -51.93 -0.39 0.39 16 43 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.05 0.66 8.07 -51.93 -0.42 0.24 16 46 H 0.39 9.59 7.71 -40.82 -0.31 9.27 16 47 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 48 H 0.07 1.45 7.99 -51.93 -0.41 1.04 16 49 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 LS Contribution 405.34 15.07 6.11 6.11 Total: -1.00 -32.17 405.34 -9.54 -41.71 By element: Atomic # 1 Polarization: 19.12 SS G_CDS: -7.42 Total: 11.70 kcal Atomic # 6 Polarization: 5.48 SS G_CDS: -2.98 Total: 2.50 kcal Atomic # 7 Polarization: -61.04 SS G_CDS: -0.39 Total: -61.44 kcal Atomic # 8 Polarization: -17.63 SS G_CDS: 0.18 Total: -17.46 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -32.17 -9.54 -41.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001216687119.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.334 kcal (2) G-P(sol) polarization free energy of solvation -32.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds