Wall clock time and date at job start Wed Apr 1 2020 03:02:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.46841 * 2 1 4 4 N 1.46498 * 109.47249 * 119.99556 * 2 1 3 5 5 C 1.34773 * 120.00449 * 275.00498 * 4 2 1 6 6 O 1.21552 * 120.00033 * 359.97438 * 5 4 2 7 7 C 1.47843 * 120.00029 * 180.02562 * 5 4 2 8 8 C 1.39583 * 120.14314 * 180.02562 * 7 5 4 9 9 C 1.37956 * 119.84920 * 180.02562 * 8 7 5 10 10 C 1.38355 * 120.14859 * 359.97438 * 9 8 7 11 11 C 1.38364 * 120.29127 * 0.27467 * 10 9 8 12 12 C 1.37953 * 120.14469 * 359.44923 * 11 10 9 13 13 C 1.50701 * 109.47466 * 240.00083 * 2 1 3 14 14 O 1.21282 * 119.99955 * 266.66760 * 13 2 1 15 15 N 1.34780 * 119.99697 * 86.66239 * 13 2 1 16 16 C 1.47016 * 125.65376 * 4.74102 * 15 13 2 17 17 C 1.54331 * 107.26927 * 178.84786 * 16 15 13 18 18 H 1.08998 * 110.66887 * 96.52142 * 17 16 15 19 19 C 1.52995 * 110.85272 * 219.66969 * 17 16 15 20 20 C 1.55155 * 103.01986 * 338.13905 * 17 16 15 21 21 H 1.09002 * 111.00694 * 277.23224 * 20 17 16 22 22 N 1.46500 * 111.00649 * 153.38002 * 20 17 16 23 23 C 1.36931 * 120.00091 * 161.35130 * 22 20 17 24 24 H 1.07997 * 120.00306 * 359.97438 * 23 22 20 25 25 C 1.38810 * 120.00149 * 180.02562 * 23 22 20 26 26 N 1.31621 * 119.99924 * 359.97438 * 25 23 22 27 27 Si 1.86806 * 120.00299 * 179.97438 * 25 23 22 28 28 H 1.48499 * 109.46954 * 59.99419 * 27 25 23 29 29 H 1.48503 * 109.47155 * 179.97438 * 27 25 23 30 30 H 1.48496 * 109.47026 * 299.99899 * 27 25 23 31 31 C 1.47427 * 125.64335 * 185.04497 * 15 13 2 32 32 H 1.09000 * 109.47407 * 297.20230 * 1 2 3 33 33 H 1.08999 * 109.46868 * 57.20254 * 1 2 3 34 34 H 1.08998 * 109.46793 * 177.20189 * 1 2 3 35 35 H 0.97004 * 119.99443 * 95.00606 * 4 2 1 36 36 H 1.07995 * 120.07173 * 359.97438 * 8 7 5 37 37 H 1.08000 * 119.92400 * 180.02562 * 9 8 7 38 38 H 1.08005 * 119.85173 * 180.02562 * 10 9 8 39 39 H 1.08001 * 119.92539 * 179.70618 * 11 10 9 40 40 H 1.07995 * 120.07407 * 180.24893 * 12 11 10 41 41 H 1.09002 * 109.87912 * 298.39073 * 16 15 13 42 42 H 1.09000 * 109.88446 * 59.55097 * 16 15 13 43 43 H 1.08995 * 109.47747 * 173.69132 * 19 17 16 44 44 H 1.08998 * 109.47269 * 293.69567 * 19 17 16 45 45 H 1.09004 * 109.47048 * 53.69223 * 19 17 16 46 46 H 0.97001 * 119.99963 * 341.35269 * 22 20 17 47 47 H 0.96999 * 119.99928 * 180.02562 * 26 25 23 48 48 H 1.08997 * 110.36882 * 322.92926 * 31 15 13 49 49 H 1.08995 * 110.36611 * 85.14405 * 31 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 2.1470 -0.0182 2.3572 6 8 1.8583 1.1613 2.4117 7 6 2.6404 -0.7150 3.5641 8 6 2.7743 -0.0217 4.7682 9 6 3.2358 -0.6778 5.8906 10 6 3.5651 -2.0199 5.8248 11 6 3.4395 -2.7117 4.6331 12 6 2.9739 -2.0690 3.5047 13 6 2.0324 -0.7104 -1.2304 14 8 2.2922 -1.8941 -1.1837 15 7 2.1930 -0.0302 -2.3829 16 6 2.0116 1.4185 -2.5553 17 6 2.3301 1.7480 -4.0290 18 1 1.4153 1.7913 -4.6199 19 6 3.1052 3.0626 -4.1380 20 6 3.2134 0.5517 -4.4716 21 1 4.2516 0.7017 -4.1752 22 7 3.1090 0.3277 -5.9156 23 6 4.0672 -0.4029 -6.5662 24 1 4.9001 -0.8136 -6.0149 25 6 3.9686 -0.6146 -7.9345 26 7 2.9538 -0.1136 -8.6065 27 14 5.2761 -1.6106 -8.8222 28 1 5.3286 -2.9800 -8.2500 29 1 4.9415 -1.6907 -10.2668 30 1 6.5972 -0.9535 -8.6552 31 6 2.5735 -0.6167 -3.6808 32 1 -0.3634 0.4698 0.9140 33 1 -0.3633 0.5567 -0.8638 34 1 -0.3633 -1.0264 -0.0502 35 1 2.2491 -1.6317 1.1526 36 1 2.5180 1.0261 4.8207 37 1 3.3395 -0.1426 6.8230 38 1 3.9255 -2.5289 6.7066 39 1 3.7027 -3.7582 4.5873 40 1 2.8725 -2.6111 2.5762 41 1 0.9819 1.6930 -2.3263 42 1 2.6957 1.9583 -1.9005 43 1 3.4150 3.2172 -5.1714 44 1 2.4668 3.8879 -3.8227 45 1 3.9859 3.0193 -3.4972 46 1 2.3612 0.6969 -6.4108 47 1 2.8847 -0.2619 -9.5626 48 1 3.2974 -1.4188 -3.5370 49 1 1.6919 -0.9911 -4.2010 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001216687119.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:39 Heat of formation + Delta-G solvation = -51.947290 kcal Electronic energy + Delta-G solvation = -29758.680229 eV Core-core repulsion = 25684.892324 eV Total energy + Delta-G solvation = -4073.787905 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.81227 -40.92617 -39.43410 -38.92225 -36.19666 -35.98868 -33.99753 -32.96839 -32.47765 -31.89923 -31.09228 -29.28524 -27.39616 -26.35826 -25.63221 -24.33043 -23.44572 -22.76632 -21.57023 -21.33940 -20.64789 -19.45940 -19.06223 -18.01464 -17.70009 -17.32943 -16.96889 -16.46638 -16.39890 -15.99724 -15.84968 -15.52905 -15.37245 -15.35407 -14.74457 -14.68520 -14.56615 -14.43330 -14.31680 -14.09725 -13.70417 -13.57146 -13.35208 -13.27583 -13.03970 -12.91691 -12.84673 -12.73120 -12.60335 -12.26884 -12.20349 -12.03482 -12.01941 -11.74207 -11.40021 -11.19377 -11.07279 -10.95221 -10.42203 -9.96874 -9.93209 -9.77889 -9.07450 -7.97642 -5.27176 -0.17741 0.40220 1.29529 1.46874 1.48768 1.54499 1.58604 1.77650 2.18383 2.54334 2.87956 3.19600 3.35640 3.50855 3.59506 3.80973 3.88065 3.93777 3.97367 4.00916 4.01922 4.17730 4.24036 4.31414 4.43743 4.45723 4.50500 4.55200 4.58339 4.64139 4.67074 4.84409 4.88025 4.90526 5.00763 5.04881 5.07253 5.11011 5.15036 5.20462 5.33260 5.34129 5.43637 5.47162 5.50027 5.52895 5.93488 6.23698 6.31495 6.39200 6.88010 6.99412 7.31542 8.02609 8.27358 9.24472 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.017297 B = 0.002114 C = 0.001988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.398703 B =13238.800601 C =14082.958278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.136 3.864 3 H 0.116 0.884 4 N -0.708 5.708 5 C 0.562 3.438 6 O -0.567 6.567 7 C -0.158 4.158 8 C -0.074 4.074 9 C -0.130 4.130 10 C -0.089 4.089 11 C -0.131 4.131 12 C -0.092 4.092 13 C 0.522 3.478 14 O -0.577 6.577 15 N -0.605 5.605 16 C 0.104 3.896 17 C -0.102 4.102 18 H 0.084 0.916 19 C -0.130 4.130 20 C 0.171 3.829 21 H 0.058 0.942 22 N -0.719 5.719 23 C -0.246 4.246 24 H 0.072 0.928 25 C -0.067 4.067 26 N -0.963 5.963 27 Si 0.968 3.032 28 H -0.282 1.282 29 H -0.294 1.294 30 H -0.277 1.277 31 C 0.093 3.907 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.062 0.938 35 H 0.412 0.588 36 H 0.130 0.870 37 H 0.154 0.846 38 H 0.157 0.843 39 H 0.152 0.848 40 H 0.133 0.867 41 H 0.099 0.901 42 H 0.091 0.909 43 H 0.044 0.956 44 H 0.081 0.919 45 H 0.060 0.940 46 H 0.379 0.621 47 H 0.252 0.748 48 H 0.047 0.953 49 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.832 1.404 29.454 29.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.028 3.972 3 H 0.134 0.866 4 N -0.362 5.362 5 C 0.352 3.648 6 O -0.447 6.447 7 C -0.161 4.161 8 C -0.093 4.093 9 C -0.147 4.147 10 C -0.107 4.107 11 C -0.148 4.148 12 C -0.111 4.111 13 C 0.311 3.689 14 O -0.457 6.457 15 N -0.337 5.337 16 C -0.018 4.018 17 C -0.121 4.121 18 H 0.103 0.897 19 C -0.188 4.188 20 C 0.060 3.940 21 H 0.076 0.924 22 N -0.358 5.358 23 C -0.378 4.378 24 H 0.090 0.910 25 C -0.260 4.260 26 N -0.612 5.612 27 Si 0.797 3.203 28 H -0.209 1.209 29 H -0.221 1.221 30 H -0.203 1.203 31 C -0.033 4.033 32 H 0.096 0.904 33 H 0.107 0.893 34 H 0.081 0.919 35 H 0.251 0.749 36 H 0.148 0.852 37 H 0.172 0.828 38 H 0.175 0.825 39 H 0.170 0.830 40 H 0.150 0.850 41 H 0.117 0.883 42 H 0.109 0.891 43 H 0.063 0.937 44 H 0.100 0.900 45 H 0.079 0.921 46 H 0.212 0.788 47 H 0.061 0.939 48 H 0.066 0.934 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.750 1.497 29.476 29.642 hybrid contribution 0.432 -1.117 -1.483 1.906 sum -2.318 0.380 27.993 28.092 Atomic orbital electron populations 1.22035 0.90864 1.03454 1.04438 1.20775 0.97034 0.97541 0.81831 0.86635 1.45759 1.66998 1.15045 1.08375 1.18609 0.76698 0.86112 0.83387 1.90739 1.51902 1.16585 1.85504 1.19883 1.06956 0.95380 0.93842 1.21408 0.95841 1.00473 0.91544 1.21490 0.99088 0.95411 0.98749 1.21822 0.95842 0.94278 0.98741 1.21487 0.99372 1.01639 0.92349 1.21552 0.96610 0.92856 1.00062 1.20630 0.77359 0.86736 0.84221 1.90668 1.53051 1.17130 1.84876 1.48470 1.66751 1.10222 1.08263 1.22429 1.03503 0.78914 0.96970 1.22387 0.99426 0.95612 0.94722 0.89745 1.21642 1.00015 0.95313 1.01795 1.21510 0.97098 0.91931 0.83426 0.92382 1.42346 1.28223 1.62695 1.02498 1.19502 1.02513 1.24720 0.91043 0.91027 1.25487 1.00359 1.02716 0.97441 1.69782 1.32705 1.51141 1.07589 0.85302 0.79056 0.78726 0.77206 1.20854 1.22053 1.20327 1.23034 0.98879 0.98716 0.82717 0.90357 0.89273 0.91922 0.74922 0.85227 0.82825 0.82504 0.83024 0.84970 0.88295 0.89132 0.93692 0.89996 0.92082 0.78833 0.93899 0.93390 0.92809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.90 9.47 71.98 0.68 -2.21 16 2 C 0.14 3.15 2.55 44.25 0.11 3.27 16 3 H 0.12 2.57 6.63 -2.38 -0.02 2.55 16 4 N -0.71 -16.15 5.01 -448.98 -2.25 -18.40 16 5 C 0.56 13.53 7.74 86.79 0.67 14.20 16 6 O -0.57 -16.43 16.01 -3.88 -0.06 -16.50 16 7 C -0.16 -3.13 5.87 -20.09 -0.12 -3.25 16 8 C -0.07 -1.28 9.60 22.53 0.22 -1.07 16 9 C -0.13 -1.52 10.03 22.23 0.22 -1.29 16 10 C -0.09 -0.86 10.04 22.33 0.22 -0.64 16 11 C -0.13 -1.52 10.03 22.23 0.22 -1.30 16 12 C -0.09 -1.47 9.54 22.53 0.21 -1.25 16 13 C 0.52 15.39 7.04 87.66 0.62 16.01 16 14 O -0.58 -20.87 16.27 -3.04 -0.05 -20.92 16 15 N -0.60 -17.75 3.33 -811.78 -2.70 -20.45 16 16 C 0.10 2.33 5.73 86.73 0.50 2.83 16 17 C -0.10 -2.81 3.16 -9.61 -0.03 -2.84 16 18 H 0.08 2.40 7.99 -2.39 -0.02 2.38 16 19 C -0.13 -3.15 9.16 71.98 0.66 -2.50 16 20 C 0.17 6.39 3.14 46.38 0.15 6.54 16 21 H 0.06 2.25 8.04 -2.39 -0.02 2.23 16 22 N -0.72 -34.35 5.28 -316.38 -1.67 -36.02 16 23 C -0.25 -13.29 9.98 84.03 0.84 -12.45 16 24 H 0.07 3.79 7.83 -2.91 -0.02 3.76 16 25 C -0.07 -3.76 5.50 84.86 0.47 -3.29 16 26 N -0.96 -57.14 13.06 21.65 0.28 -56.86 16 27 Si 0.97 45.64 29.55 68.60 2.03 47.66 16 28 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 29 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 30 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 31 C 0.09 3.43 6.62 86.86 0.58 4.01 16 32 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.09 1.46 7.72 -2.39 -0.02 1.44 16 34 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.41 8.99 5.84 -92.71 -0.54 8.45 16 36 H 0.13 2.33 7.65 -2.91 -0.02 2.31 16 37 H 0.15 0.98 8.06 -2.91 -0.02 0.95 16 38 H 0.16 0.57 8.06 -2.91 -0.02 0.55 16 39 H 0.15 1.04 8.06 -2.91 -0.02 1.02 16 40 H 0.13 1.89 6.41 -2.91 -0.02 1.87 16 41 H 0.10 1.69 7.72 -2.39 -0.02 1.67 16 42 H 0.09 1.73 7.53 -2.39 -0.02 1.71 16 43 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 44 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 45 H 0.06 1.38 8.07 -2.39 -0.02 1.36 16 46 H 0.38 19.24 7.71 -92.71 -0.71 18.53 16 47 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 48 H 0.05 1.99 7.99 -2.39 -0.02 1.97 16 49 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 Total: -1.00 -71.46 405.34 1.52 -69.94 By element: Atomic # 1 Polarization: 37.08 SS G_CDS: -0.28 Total: 36.79 kcal Atomic # 6 Polarization: 8.53 SS G_CDS: 6.22 Total: 14.75 kcal Atomic # 7 Polarization: -125.40 SS G_CDS: -6.33 Total: -131.74 kcal Atomic # 8 Polarization: -37.30 SS G_CDS: -0.11 Total: -37.41 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.66 kcal Total: -71.46 1.52 -69.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001216687119.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.993 kcal (2) G-P(sol) polarization free energy of solvation -71.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds