Wall clock time and date at job start Wed Apr 1 2020 03:02:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21287 * 119.99623 * 2 1 4 4 N 1.34774 * 119.99851 * 179.97438 * 2 1 3 5 5 C 1.46496 * 119.99847 * 6.23486 * 4 2 1 6 6 C 1.50702 * 109.47276 * 265.15942 * 5 4 2 7 7 O 1.21279 * 119.99837 * 0.02562 * 6 5 4 8 8 N 1.34773 * 120.00158 * 180.02562 * 6 5 4 9 9 C 1.47426 * 125.64879 * 179.97438 * 8 6 5 10 10 C 1.54910 * 104.83161 * 204.16071 * 9 8 6 11 11 H 1.08997 * 111.00087 * 81.10415 * 10 9 8 12 12 C 1.52993 * 111.00535 * 204.91481 * 10 9 8 13 13 C 1.55405 * 101.66622 * 323.07843 * 10 9 8 14 14 H 1.08998 * 110.69019 * 277.04193 * 13 10 9 15 15 N 1.46497 * 110.85039 * 153.70189 * 13 10 9 16 16 C 1.36941 * 120.00155 * 160.08348 * 15 13 10 17 17 H 1.08007 * 119.99425 * 359.97438 * 16 15 13 18 18 C 1.38812 * 120.00470 * 179.97438 * 16 15 13 19 19 N 1.31619 * 119.99544 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00070 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.47033 * 90.00214 * 20 18 16 22 22 H 1.48498 * 109.47159 * 210.00027 * 20 18 16 23 23 H 1.48499 * 109.47266 * 330.00619 * 20 18 16 24 24 C 1.47031 * 125.64697 * 0.02562 * 8 6 5 25 25 C 1.39926 * 120.00049 * 186.23277 * 4 2 1 26 26 C 1.38863 * 120.07093 * 187.55178 * 25 4 2 27 27 C 1.38115 * 119.92815 * 179.74807 * 26 25 4 28 28 C 1.38282 * 120.07071 * 0.52517 * 27 26 25 29 29 C 1.38283 * 120.14003 * 359.72958 * 28 27 26 30 30 C 1.38117 * 120.07238 * 0.02562 * 29 28 27 31 31 H 1.09003 * 109.47127 * 264.67709 * 1 2 3 32 32 H 1.09009 * 109.47216 * 24.67585 * 1 2 3 33 33 H 1.08997 * 109.47262 * 144.67315 * 1 2 3 34 34 H 1.09008 * 109.46824 * 145.16360 * 5 4 2 35 35 H 1.08996 * 109.47425 * 25.16389 * 5 4 2 36 36 H 1.08990 * 110.36606 * 323.00128 * 9 8 6 37 37 H 1.09001 * 110.36314 * 85.21404 * 9 8 6 38 38 H 1.09001 * 109.47244 * 58.54531 * 12 10 9 39 39 H 1.09001 * 109.47709 * 178.54654 * 12 10 9 40 40 H 1.09000 * 109.47530 * 298.55056 * 12 10 9 41 41 H 0.96999 * 120.00288 * 340.07858 * 15 13 10 42 42 H 0.97004 * 119.99375 * 179.97438 * 19 18 16 43 43 H 1.08996 * 109.88204 * 298.32563 * 24 8 6 44 44 H 1.08998 * 109.87886 * 59.34138 * 24 8 6 45 45 H 1.08002 * 120.03825 * 359.97438 * 26 25 4 46 46 H 1.07998 * 119.96859 * 180.25444 * 27 26 25 47 47 H 1.08000 * 119.93311 * 179.70134 * 28 27 26 48 48 H 1.08002 * 119.96795 * 179.97438 * 29 28 27 49 49 H 1.07995 * 120.03985 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.4548 -2.4322 -0.1367 6 6 1.1762 -3.0023 1.2302 7 8 1.5471 -2.4101 2.2214 8 7 0.5148 -4.1704 1.3511 9 6 0.1773 -4.8392 2.6209 10 6 0.0180 -6.3350 2.2510 11 1 0.9884 -6.8275 2.1890 12 6 -0.8949 -7.0521 3.2475 13 6 -0.6483 -6.2431 0.8501 14 1 -1.7254 -6.1056 0.9442 15 7 -0.3441 -7.4314 0.0491 16 6 -1.1318 -7.7541 -1.0237 17 1 -1.9775 -7.1326 -1.2789 18 6 -0.8434 -8.8797 -1.7830 19 7 0.1869 -9.6373 -1.4716 20 14 -1.9183 -9.3201 -3.2459 21 1 -1.3849 -8.6649 -4.4672 22 1 -1.9185 -10.7931 -3.4344 23 1 -3.3059 -8.8524 -2.9992 24 6 0.0113 -4.9892 0.2386 25 6 3.5739 -1.1708 0.1321 26 6 4.2845 -2.3536 -0.0236 27 6 5.6599 -2.3528 0.1017 28 6 6.3285 -1.1778 0.3927 29 6 5.6233 0.0008 0.5536 30 6 4.2482 0.0076 0.4245 31 1 -0.3633 -0.0953 1.0233 32 1 -0.3634 0.9339 -0.4291 33 1 -0.3633 -0.8384 -0.5942 34 1 2.0583 -3.1373 -0.7084 35 1 0.5127 -2.2560 -0.6558 36 1 0.9833 -4.7107 3.3432 37 1 -0.7564 -4.4441 3.0212 38 1 -1.8712 -6.5676 3.2596 39 1 -1.0102 -8.0944 2.9498 40 1 -0.4538 -7.0054 4.2432 41 1 0.4152 -7.9897 0.2785 42 1 0.3882 -10.4241 -2.0020 43 1 -0.7250 -4.4247 -0.3335 44 1 0.8375 -5.2831 -0.4088 45 1 3.7625 -3.2726 -0.2461 46 1 6.2136 -3.2716 -0.0233 47 1 7.4036 -1.1806 0.4950 48 1 6.1482 0.9168 0.7812 49 1 3.6979 0.9283 0.5507 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001216807999.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:49 Heat of formation + Delta-G solvation = -2.230519 kcal Electronic energy + Delta-G solvation = -30743.119079 eV Core-core repulsion = 26671.487055 eV Total energy + Delta-G solvation = -4071.632024 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.25381 -39.76904 -38.41541 -37.75826 -35.66529 -34.20390 -32.70813 -31.46345 -30.90404 -30.84054 -29.22286 -28.18234 -27.62080 -25.82434 -24.10329 -23.10921 -22.32055 -21.69150 -20.24527 -20.06946 -19.14891 -17.73687 -17.54039 -17.23406 -17.14069 -16.32104 -15.80867 -15.73746 -15.15198 -14.90127 -14.59239 -14.35295 -14.08523 -13.75162 -13.66057 -13.38965 -13.37310 -13.31061 -13.15725 -12.87819 -12.76269 -12.54736 -12.39868 -12.25086 -12.07071 -11.72959 -11.67027 -11.24578 -11.23082 -11.11366 -10.86228 -10.78698 -10.71095 -10.35881 -10.08092 -9.89303 -9.76490 -9.54881 -9.11307 -8.91869 -8.52073 -8.00094 -7.21179 -5.95375 -3.27034 1.24242 1.43418 2.25019 2.49910 2.53681 3.10900 3.31738 3.37816 3.39660 3.87140 4.16024 4.37332 4.46776 4.50899 4.70540 4.88829 4.93260 4.96880 4.98000 5.00502 5.10634 5.17041 5.21911 5.38164 5.41905 5.44411 5.50508 5.54011 5.59145 5.61445 5.71683 5.77759 5.87666 6.03791 6.06347 6.11806 6.15671 6.21711 6.35045 6.37553 6.38137 6.47620 6.49871 6.57529 6.73323 7.03041 7.09905 7.52035 7.57881 7.79623 8.11674 8.21821 9.34013 9.86866 10.21417 11.26236 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011556 B = 0.002801 C = 0.002707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2422.473149 B = 9993.546089 C =10341.514329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.521 3.479 3 O -0.520 6.520 4 N -0.533 5.533 5 C 0.080 3.920 6 C 0.507 3.493 7 O -0.536 6.536 8 N -0.609 5.609 9 C 0.115 3.885 10 C -0.114 4.114 11 H 0.084 0.916 12 C -0.133 4.133 13 C 0.179 3.821 14 H 0.067 0.933 15 N -0.711 5.711 16 C -0.252 4.252 17 H 0.073 0.927 18 C -0.006 4.006 19 N -0.927 5.927 20 Si 0.907 3.093 21 H -0.288 1.288 22 H -0.291 1.291 23 H -0.281 1.281 24 C 0.066 3.934 25 C 0.162 3.838 26 C -0.157 4.157 27 C -0.095 4.095 28 C -0.149 4.149 29 C -0.100 4.100 30 C -0.159 4.159 31 H 0.100 0.900 32 H 0.099 0.901 33 H 0.086 0.914 34 H 0.120 0.880 35 H 0.123 0.877 36 H 0.072 0.928 37 H 0.067 0.933 38 H 0.053 0.947 39 H 0.067 0.933 40 H 0.049 0.951 41 H 0.387 0.613 42 H 0.258 0.742 43 H 0.061 0.939 44 H 0.076 0.924 45 H 0.122 0.878 46 H 0.124 0.876 47 H 0.119 0.881 48 H 0.122 0.878 49 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.258 14.714 4.537 15.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.313 3.687 3 O -0.397 6.397 4 N -0.255 5.255 5 C -0.046 4.046 6 C 0.293 3.707 7 O -0.413 6.413 8 N -0.343 5.343 9 C -0.008 4.008 10 C -0.133 4.133 11 H 0.102 0.898 12 C -0.191 4.191 13 C 0.066 3.934 14 H 0.085 0.915 15 N -0.351 5.351 16 C -0.383 4.383 17 H 0.091 0.909 18 C -0.203 4.203 19 N -0.574 5.574 20 Si 0.738 3.262 21 H -0.216 1.216 22 H -0.217 1.217 23 H -0.206 1.206 24 C -0.060 4.060 25 C 0.069 3.931 26 C -0.177 4.177 27 C -0.114 4.114 28 C -0.168 4.168 29 C -0.119 4.119 30 C -0.179 4.179 31 H 0.119 0.881 32 H 0.118 0.882 33 H 0.104 0.896 34 H 0.137 0.863 35 H 0.140 0.860 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.073 0.927 39 H 0.086 0.914 40 H 0.069 0.931 41 H 0.222 0.778 42 H 0.067 0.933 43 H 0.080 0.920 44 H 0.094 0.906 45 H 0.140 0.860 46 H 0.142 0.858 47 H 0.137 0.863 48 H 0.140 0.860 49 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 3.575 15.612 4.884 16.745 hybrid contribution -0.297 -0.857 -0.875 1.260 sum 3.278 14.755 4.009 15.638 Atomic orbital electron populations 1.22056 0.90718 1.05463 1.05408 1.20946 0.90948 0.82259 0.74572 1.90443 1.69367 1.31329 1.48577 1.45122 1.05161 1.06539 1.68674 1.21746 0.99986 0.86607 0.96302 1.20511 0.78288 0.80523 0.91417 1.90735 1.51907 1.59566 1.39097 1.48551 1.55254 1.20860 1.09650 1.22273 1.00443 0.91872 0.86199 1.22669 1.00579 0.93446 0.96656 0.89790 1.21602 0.98579 1.01401 0.97518 1.21266 0.96942 0.86569 0.88591 0.91478 1.42358 1.34672 1.25603 1.32455 1.19215 1.07572 1.07344 1.04127 0.90947 1.24770 0.98208 0.97703 0.99608 1.69656 1.29010 1.17413 1.41348 0.86205 0.79831 0.77544 0.82645 1.21563 1.21695 1.20631 1.23474 0.99203 0.94084 0.89261 1.17910 0.81508 0.95109 0.98597 1.20826 0.94794 0.96617 1.05497 1.20896 0.93403 0.98276 0.98795 1.21114 0.99810 0.92989 1.02839 1.21118 0.93895 0.97948 0.98931 1.22343 0.94853 0.99728 1.00930 0.88115 0.88221 0.89575 0.86255 0.85961 0.90932 0.91503 0.92743 0.91371 0.93143 0.77817 0.93252 0.92016 0.90595 0.85977 0.85766 0.86306 0.85993 0.81135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.55 9.70 36.01 0.35 -1.20 16 2 C 0.52 6.71 7.68 -10.99 -0.08 6.62 16 3 O -0.52 -7.98 13.62 5.55 0.08 -7.91 16 4 N -0.53 -6.97 2.21 -114.74 -0.25 -7.23 16 5 C 0.08 0.89 4.44 -5.19 -0.02 0.87 16 6 C 0.51 7.09 7.90 -10.99 -0.09 7.00 16 7 O -0.54 -9.38 16.62 5.56 0.09 -9.28 16 8 N -0.61 -8.28 3.33 -170.52 -0.57 -8.84 16 9 C 0.11 1.52 6.38 -2.53 -0.02 1.51 16 10 C -0.11 -1.60 3.26 -88.34 -0.29 -1.89 16 11 H 0.08 1.28 8.01 -51.93 -0.42 0.86 16 12 C -0.13 -1.70 9.30 37.15 0.35 -1.35 16 13 C 0.18 2.92 3.08 -65.97 -0.20 2.72 16 14 H 0.07 1.11 8.00 -51.93 -0.42 0.70 16 15 N -0.71 -15.27 5.18 -51.52 -0.27 -15.54 16 16 C -0.25 -6.15 9.98 -15.06 -0.15 -6.30 16 17 H 0.07 1.70 7.83 -52.48 -0.41 1.29 16 18 C -0.01 -0.15 5.50 -17.43 -0.10 -0.25 16 19 N -0.93 -25.75 13.06 55.49 0.72 -25.03 16 20 Si 0.91 20.58 29.55 -169.99 -5.02 15.55 16 21 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 24 C 0.07 0.93 6.23 -3.06 -0.02 0.92 16 25 C 0.16 2.34 6.39 -83.69 -0.54 1.80 16 26 C -0.16 -2.09 9.26 -39.40 -0.36 -2.46 16 27 C -0.10 -1.15 10.04 -39.61 -0.40 -1.54 16 28 C -0.15 -1.71 10.04 -39.55 -0.40 -2.11 16 29 C -0.10 -1.23 10.04 -39.61 -0.40 -1.63 16 30 C -0.16 -2.30 8.97 -39.39 -0.35 -2.65 16 31 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.10 0.74 8.14 -51.92 -0.42 0.31 16 33 H 0.09 0.57 5.93 -51.93 -0.31 0.27 16 34 H 0.12 1.23 6.20 -51.92 -0.32 0.91 16 35 H 0.12 1.01 5.76 -51.93 -0.30 0.71 16 36 H 0.07 1.00 8.04 -51.93 -0.42 0.58 16 37 H 0.07 0.82 8.04 -51.93 -0.42 0.40 16 38 H 0.05 0.64 8.11 -51.93 -0.42 0.22 16 39 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.39 9.07 7.72 -40.82 -0.32 8.76 16 42 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 43 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.08 1.17 8.03 -51.93 -0.42 0.76 16 45 H 0.12 1.50 6.11 -52.49 -0.32 1.18 16 46 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 47 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 48 H 0.12 1.21 8.06 -52.49 -0.42 0.78 16 49 H 0.17 2.64 4.74 -55.07 -0.26 2.38 16 LS Contribution 398.78 15.07 6.01 6.01 Total: -1.00 -31.57 398.78 -9.18 -40.76 By element: Atomic # 1 Polarization: 18.70 SS G_CDS: -7.26 Total: 11.44 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: -2.72 Total: 0.07 kcal Atomic # 7 Polarization: -56.27 SS G_CDS: -0.36 Total: -56.64 kcal Atomic # 8 Polarization: -17.36 SS G_CDS: 0.17 Total: -17.19 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -31.57 -9.18 -40.76 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001216807999.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.526 kcal (2) G-P(sol) polarization free energy of solvation -31.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds