Wall clock time and date at job start Wed Apr 1 2020 03:02:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21287 * 119.99623 * 2 1 4 4 N 1.34774 * 119.99851 * 179.97438 * 2 1 3 5 5 C 1.46496 * 119.99847 * 6.23486 * 4 2 1 6 6 C 1.50702 * 109.47276 * 265.15942 * 5 4 2 7 7 O 1.21279 * 119.99837 * 0.02562 * 6 5 4 8 8 N 1.34773 * 120.00158 * 180.02562 * 6 5 4 9 9 C 1.47426 * 125.64879 * 179.97438 * 8 6 5 10 10 C 1.54910 * 104.83161 * 204.16071 * 9 8 6 11 11 H 1.08997 * 111.00087 * 81.10415 * 10 9 8 12 12 C 1.52993 * 111.00535 * 204.91481 * 10 9 8 13 13 C 1.55405 * 101.66622 * 323.07843 * 10 9 8 14 14 H 1.08998 * 110.69019 * 277.04193 * 13 10 9 15 15 N 1.46497 * 110.85039 * 153.70189 * 13 10 9 16 16 C 1.36941 * 120.00155 * 160.08348 * 15 13 10 17 17 H 1.08007 * 119.99425 * 359.97438 * 16 15 13 18 18 C 1.38812 * 120.00470 * 179.97438 * 16 15 13 19 19 N 1.31619 * 119.99544 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00070 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.47033 * 90.00214 * 20 18 16 22 22 H 1.48498 * 109.47159 * 210.00027 * 20 18 16 23 23 H 1.48499 * 109.47266 * 330.00619 * 20 18 16 24 24 C 1.47031 * 125.64697 * 0.02562 * 8 6 5 25 25 C 1.39926 * 120.00049 * 186.23277 * 4 2 1 26 26 C 1.38863 * 120.07093 * 187.55178 * 25 4 2 27 27 C 1.38115 * 119.92815 * 179.74807 * 26 25 4 28 28 C 1.38282 * 120.07071 * 0.52517 * 27 26 25 29 29 C 1.38283 * 120.14003 * 359.72958 * 28 27 26 30 30 C 1.38117 * 120.07238 * 0.02562 * 29 28 27 31 31 H 1.09003 * 109.47127 * 264.67709 * 1 2 3 32 32 H 1.09009 * 109.47216 * 24.67585 * 1 2 3 33 33 H 1.08997 * 109.47262 * 144.67315 * 1 2 3 34 34 H 1.09008 * 109.46824 * 145.16360 * 5 4 2 35 35 H 1.08996 * 109.47425 * 25.16389 * 5 4 2 36 36 H 1.08990 * 110.36606 * 323.00128 * 9 8 6 37 37 H 1.09001 * 110.36314 * 85.21404 * 9 8 6 38 38 H 1.09001 * 109.47244 * 58.54531 * 12 10 9 39 39 H 1.09001 * 109.47709 * 178.54654 * 12 10 9 40 40 H 1.09000 * 109.47530 * 298.55056 * 12 10 9 41 41 H 0.96999 * 120.00288 * 340.07858 * 15 13 10 42 42 H 0.97004 * 119.99375 * 179.97438 * 19 18 16 43 43 H 1.08996 * 109.88204 * 298.32563 * 24 8 6 44 44 H 1.08998 * 109.87886 * 59.34138 * 24 8 6 45 45 H 1.08002 * 120.03825 * 359.97438 * 26 25 4 46 46 H 1.07998 * 119.96859 * 180.25444 * 27 26 25 47 47 H 1.08000 * 119.93311 * 179.70134 * 28 27 26 48 48 H 1.08002 * 119.96795 * 179.97438 * 29 28 27 49 49 H 1.07995 * 120.03985 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.4548 -2.4322 -0.1367 6 6 1.1762 -3.0023 1.2302 7 8 1.5471 -2.4101 2.2214 8 7 0.5148 -4.1704 1.3511 9 6 0.1773 -4.8392 2.6209 10 6 0.0180 -6.3350 2.2510 11 1 0.9884 -6.8275 2.1890 12 6 -0.8949 -7.0521 3.2475 13 6 -0.6483 -6.2431 0.8501 14 1 -1.7254 -6.1056 0.9442 15 7 -0.3441 -7.4314 0.0491 16 6 -1.1318 -7.7541 -1.0237 17 1 -1.9775 -7.1326 -1.2789 18 6 -0.8434 -8.8797 -1.7830 19 7 0.1869 -9.6373 -1.4716 20 14 -1.9183 -9.3201 -3.2459 21 1 -1.3849 -8.6649 -4.4672 22 1 -1.9185 -10.7931 -3.4344 23 1 -3.3059 -8.8524 -2.9992 24 6 0.0113 -4.9892 0.2386 25 6 3.5739 -1.1708 0.1321 26 6 4.2845 -2.3536 -0.0236 27 6 5.6599 -2.3528 0.1017 28 6 6.3285 -1.1778 0.3927 29 6 5.6233 0.0008 0.5536 30 6 4.2482 0.0076 0.4245 31 1 -0.3633 -0.0953 1.0233 32 1 -0.3634 0.9339 -0.4291 33 1 -0.3633 -0.8384 -0.5942 34 1 2.0583 -3.1373 -0.7084 35 1 0.5127 -2.2560 -0.6558 36 1 0.9833 -4.7107 3.3432 37 1 -0.7564 -4.4441 3.0212 38 1 -1.8712 -6.5676 3.2596 39 1 -1.0102 -8.0944 2.9498 40 1 -0.4538 -7.0054 4.2432 41 1 0.4152 -7.9897 0.2785 42 1 0.3882 -10.4241 -2.0020 43 1 -0.7250 -4.4247 -0.3335 44 1 0.8375 -5.2831 -0.4088 45 1 3.7625 -3.2726 -0.2461 46 1 6.2136 -3.2716 -0.0233 47 1 7.4036 -1.1806 0.4950 48 1 6.1482 0.9168 0.7812 49 1 3.6979 0.9283 0.5507 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001216807999.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:47 Heat of formation + Delta-G solvation = -20.548498 kcal Electronic energy + Delta-G solvation = -30743.913406 eV Core-core repulsion = 26671.487055 eV Total energy + Delta-G solvation = -4072.426351 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.23790 -40.90643 -39.37511 -38.98023 -36.69143 -35.81692 -33.99572 -32.52435 -32.29003 -31.85418 -30.12418 -29.17568 -28.98400 -26.86651 -25.80541 -24.07260 -23.34891 -22.92462 -21.40306 -21.19351 -20.18178 -19.03078 -18.70101 -18.53499 -18.19749 -17.40272 -16.93229 -16.80377 -16.40810 -16.12276 -15.70854 -15.43169 -15.30562 -15.20747 -14.70363 -14.60063 -14.54973 -14.31647 -14.13763 -14.03552 -13.88985 -13.49842 -13.41816 -13.22554 -13.00175 -12.96110 -12.82948 -12.79820 -12.59405 -12.18149 -12.15950 -12.13721 -11.99634 -11.82465 -11.64194 -11.36735 -10.98144 -10.82511 -10.53355 -9.90290 -9.66983 -9.02574 -8.97056 -7.89818 -5.18955 0.27616 0.44627 1.28306 1.45260 1.53911 1.55184 1.58573 1.62392 2.05254 2.60810 2.88946 3.32252 3.32574 3.42906 3.68252 3.77420 3.84543 3.85872 3.92225 4.06309 4.10108 4.25527 4.26905 4.34058 4.41053 4.43647 4.50326 4.51263 4.51828 4.64139 4.64679 4.70380 4.89981 4.91544 4.94764 5.10419 5.12099 5.18551 5.21014 5.24855 5.35915 5.43004 5.50953 5.52837 5.61373 5.61627 6.09247 6.12855 6.30715 6.45463 6.83720 7.02189 7.39194 8.11548 8.34145 9.33066 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011556 B = 0.002801 C = 0.002707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2422.473149 B = 9993.546089 C =10341.514329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.509 3.491 3 O -0.553 6.553 4 N -0.536 5.536 5 C 0.081 3.919 6 C 0.510 3.490 7 O -0.573 6.573 8 N -0.605 5.605 9 C 0.118 3.882 10 C -0.105 4.105 11 H 0.068 0.932 12 C -0.129 4.129 13 C 0.171 3.829 14 H 0.073 0.927 15 N -0.722 5.722 16 C -0.235 4.235 17 H 0.085 0.915 18 C -0.070 4.070 19 N -0.968 5.968 20 Si 0.964 3.036 21 H -0.289 1.289 22 H -0.305 1.305 23 H -0.267 1.267 24 C 0.078 3.922 25 C 0.141 3.859 26 C -0.171 4.171 27 C -0.101 4.101 28 C -0.149 4.149 29 C -0.105 4.105 30 C -0.185 4.185 31 H 0.102 0.898 32 H 0.112 0.888 33 H 0.111 0.889 34 H 0.129 0.871 35 H 0.158 0.842 36 H 0.067 0.933 37 H 0.084 0.916 38 H 0.067 0.933 39 H 0.046 0.954 40 H 0.068 0.932 41 H 0.374 0.626 42 H 0.249 0.751 43 H 0.087 0.913 44 H 0.064 0.936 45 H 0.128 0.872 46 H 0.146 0.854 47 H 0.148 0.852 48 H 0.142 0.858 49 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.270 15.630 4.362 16.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.303 3.697 3 O -0.433 6.433 4 N -0.257 5.257 5 C -0.045 4.045 6 C 0.298 3.702 7 O -0.452 6.452 8 N -0.339 5.339 9 C -0.004 4.004 10 C -0.125 4.125 11 H 0.087 0.913 12 C -0.186 4.186 13 C 0.061 3.939 14 H 0.091 0.909 15 N -0.361 5.361 16 C -0.366 4.366 17 H 0.103 0.897 18 C -0.263 4.263 19 N -0.618 5.618 20 Si 0.794 3.206 21 H -0.216 1.216 22 H -0.232 1.232 23 H -0.192 1.192 24 C -0.048 4.048 25 C 0.047 3.953 26 C -0.192 4.192 27 C -0.119 4.119 28 C -0.168 4.168 29 C -0.123 4.123 30 C -0.205 4.205 31 H 0.121 0.879 32 H 0.131 0.869 33 H 0.130 0.870 34 H 0.147 0.853 35 H 0.175 0.825 36 H 0.085 0.915 37 H 0.103 0.897 38 H 0.086 0.914 39 H 0.065 0.935 40 H 0.087 0.913 41 H 0.207 0.793 42 H 0.058 0.942 43 H 0.105 0.895 44 H 0.083 0.917 45 H 0.146 0.854 46 H 0.163 0.837 47 H 0.165 0.835 48 H 0.160 0.840 49 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 2.544 16.566 4.723 17.413 hybrid contribution 0.050 -1.079 -0.712 1.294 sum 2.594 15.487 4.011 16.207 Atomic orbital electron populations 1.22108 0.87386 1.07358 1.06082 1.21779 0.92588 0.81726 0.73654 1.90430 1.70405 1.32432 1.50026 1.45273 1.04890 1.07228 1.68349 1.21931 1.01606 0.86090 0.94823 1.20914 0.77276 0.80036 0.92005 1.90727 1.53323 1.60550 1.40641 1.48531 1.55104 1.20714 1.09531 1.22270 1.01094 0.90990 0.86080 1.22566 0.99868 0.94257 0.95801 0.91347 1.21563 0.99125 0.99931 0.98003 1.21471 0.97609 0.85589 0.89209 0.90875 1.42490 1.33956 1.27163 1.32508 1.19623 1.07070 1.06286 1.03658 0.89735 1.25456 0.99750 0.98567 1.02483 1.69805 1.31189 1.18083 1.42733 0.85277 0.79054 0.76217 0.80007 1.21603 1.23216 1.19218 1.23161 0.99215 0.93379 0.89022 1.18178 0.82504 0.95447 0.99123 1.21019 0.95578 0.96508 1.06073 1.21264 0.93208 0.99471 0.97952 1.21461 1.01267 0.92330 1.01704 1.21419 0.93317 0.99338 0.98229 1.22390 0.95976 0.99519 1.02605 0.87912 0.86905 0.87033 0.85306 0.82514 0.91490 0.89749 0.91405 0.93477 0.91283 0.79331 0.94243 0.89477 0.91723 0.85448 0.83668 0.83452 0.83993 0.82619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.59 9.70 71.24 0.69 -1.90 16 2 C 0.51 12.78 7.68 87.66 0.67 13.46 16 3 O -0.55 -17.33 13.62 -3.05 -0.04 -17.37 16 4 N -0.54 -13.60 2.21 -635.31 -1.41 -15.00 16 5 C 0.08 1.64 4.44 85.63 0.38 2.02 16 6 C 0.51 13.35 7.90 87.66 0.69 14.04 16 7 O -0.57 -19.52 16.62 -3.03 -0.05 -19.57 16 8 N -0.61 -15.07 3.33 -811.80 -2.70 -17.77 16 9 C 0.12 2.89 6.38 86.86 0.55 3.44 16 10 C -0.11 -2.81 3.26 -9.32 -0.03 -2.84 16 11 H 0.07 2.06 8.01 -2.39 -0.02 2.04 16 12 C -0.13 -3.05 9.30 71.98 0.67 -2.39 16 13 C 0.17 5.28 3.08 46.27 0.14 5.42 16 14 H 0.07 2.21 8.00 -2.39 -0.02 2.19 16 15 N -0.72 -30.48 5.18 -316.93 -1.64 -32.12 16 16 C -0.23 -11.16 9.98 84.03 0.84 -10.32 16 17 H 0.08 3.76 7.83 -2.91 -0.02 3.73 16 18 C -0.07 -3.62 5.50 84.86 0.47 -3.15 16 19 N -0.97 -54.64 13.06 21.65 0.28 -54.35 16 20 Si 0.96 42.07 29.55 68.60 2.03 44.10 16 21 H -0.29 -12.46 7.11 99.48 0.71 -11.75 16 22 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 23 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 24 C 0.08 2.00 6.23 86.73 0.54 2.54 16 25 C 0.14 4.07 6.39 38.15 0.24 4.31 16 26 C -0.17 -4.47 9.26 22.39 0.21 -4.26 16 27 C -0.10 -2.30 10.04 22.25 0.22 -2.07 16 28 C -0.15 -3.20 10.04 22.29 0.22 -2.97 16 29 C -0.10 -2.52 10.04 22.25 0.22 -2.30 16 30 C -0.19 -5.46 8.97 22.39 0.20 -5.26 16 31 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.11 1.42 8.14 -2.38 -0.02 1.40 16 33 H 0.11 1.07 5.93 -2.39 -0.01 1.06 16 34 H 0.13 2.40 6.20 -2.38 -0.01 2.39 16 35 H 0.16 2.01 5.76 -2.39 -0.01 1.99 16 36 H 0.07 1.75 8.04 -2.39 -0.02 1.73 16 37 H 0.08 1.81 8.04 -2.39 -0.02 1.79 16 38 H 0.07 1.43 8.11 -2.39 -0.02 1.41 16 39 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.37 17.70 7.72 -92.71 -0.72 16.98 16 42 H 0.25 13.87 8.31 -92.71 -0.77 13.10 16 43 H 0.09 1.85 8.14 -2.39 -0.02 1.84 16 44 H 0.06 1.87 8.03 -2.39 -0.02 1.85 16 45 H 0.13 3.04 6.11 -2.91 -0.02 3.02 16 46 H 0.15 2.60 8.06 -2.91 -0.02 2.57 16 47 H 0.15 2.25 8.06 -2.91 -0.02 2.22 16 48 H 0.14 2.68 8.06 -2.91 -0.02 2.66 16 49 H 0.16 5.06 4.74 -43.82 -0.21 4.85 16 Total: -1.00 -69.87 398.78 3.47 -66.40 By element: Atomic # 1 Polarization: 37.86 SS G_CDS: 0.06 Total: 37.92 kcal Atomic # 6 Polarization: 0.83 SS G_CDS: 6.94 Total: 7.77 kcal Atomic # 7 Polarization: -113.79 SS G_CDS: -5.46 Total: -119.25 kcal Atomic # 8 Polarization: -36.85 SS G_CDS: -0.09 Total: -36.94 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.10 kcal Total: -69.87 3.47 -66.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001216807999.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.852 kcal (2) G-P(sol) polarization free energy of solvation -69.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds