Wall clock time and date at job start Wed Apr 1 2020 04:53:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 109.46975 * 2 1 4 4 N 1.46499 * 109.47376 * 240.00325 * 2 1 3 5 5 C 1.34779 * 120.00151 * 84.99816 * 4 2 1 6 6 O 1.21357 * 119.99719 * 0.02562 * 5 4 2 7 7 C 1.49357 * 119.99657 * 180.02562 * 5 4 2 8 8 O 1.21376 * 120.00305 * 359.72560 * 7 5 4 9 9 N 1.34776 * 119.99256 * 180.02562 * 7 5 4 10 10 C 1.39733 * 119.99681 * 175.75509 * 9 7 5 11 11 C 1.38928 * 120.07458 * 214.89944 * 10 9 7 12 12 C 1.38094 * 119.91952 * 179.72197 * 11 10 9 13 13 C 1.38294 * 120.08051 * 0.55002 * 12 11 10 14 14 C 1.38293 * 120.14704 * 359.72317 * 13 12 11 15 15 C 1.38093 * 120.07965 * 0.02562 * 14 13 12 16 16 C 1.53000 * 109.47257 * 120.00189 * 2 1 3 17 17 H 1.09000 * 109.50056 * 60.06353 * 16 2 1 18 18 C 1.53047 * 109.49580 * 300.00160 * 16 2 1 19 19 C 1.53042 * 109.53568 * 178.68306 * 18 16 2 20 20 C 1.53200 * 109.31258 * 61.36449 * 19 18 16 21 21 N 1.46918 * 108.77533 * 305.36309 * 20 19 18 22 22 C 1.36932 * 120.63336 * 233.58834 * 21 20 19 23 23 H 1.07996 * 120.00534 * 154.45134 * 22 21 20 24 24 C 1.38812 * 119.99765 * 334.44701 * 22 21 20 25 25 N 1.31620 * 120.00208 * 155.13923 * 24 22 21 26 26 Si 1.86804 * 120.00129 * 335.14153 * 24 22 21 27 27 H 1.48504 * 109.46973 * 85.64932 * 26 24 22 28 28 H 1.48500 * 109.47273 * 205.64983 * 26 24 22 29 29 H 1.48501 * 109.47049 * 325.65202 * 26 24 22 30 30 C 1.46928 * 118.73873 * 53.61051 * 21 20 19 31 31 H 1.08996 * 109.47059 * 299.99677 * 1 2 3 32 32 H 1.09003 * 109.47397 * 60.00159 * 1 2 3 33 33 H 1.08999 * 109.47149 * 179.97438 * 1 2 3 34 34 H 0.96999 * 119.99832 * 265.00340 * 4 2 1 35 35 H 0.97003 * 120.00606 * 355.74968 * 9 7 5 36 36 H 1.08000 * 120.03898 * 359.97438 * 11 10 9 37 37 H 1.08001 * 119.96061 * 180.27603 * 12 11 10 38 38 H 1.08001 * 119.92734 * 179.74899 * 13 12 11 39 39 H 1.08005 * 119.95858 * 180.02562 * 14 13 12 40 40 H 1.07997 * 120.04059 * 180.02562 * 15 14 13 41 41 H 1.09003 * 109.45737 * 298.69996 * 18 16 2 42 42 H 1.08994 * 109.45702 * 58.67376 * 18 16 2 43 43 H 1.08997 * 109.49512 * 181.31248 * 19 18 16 44 44 H 1.09000 * 109.49599 * 301.38165 * 19 18 16 45 45 H 1.09000 * 109.58086 * 65.15058 * 20 19 18 46 46 H 1.08994 * 109.58324 * 185.57679 * 20 19 18 47 47 H 0.97004 * 120.00097 * 179.97438 * 25 24 22 48 48 H 1.09008 * 109.58430 * 186.60157 * 30 21 20 49 49 H 1.08998 * 109.58858 * 66.18168 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 2.1471 -0.0181 -2.3571 6 8 1.8588 1.1595 -2.4115 7 6 2.6444 -0.7224 -3.5767 8 8 2.9374 -1.8989 -3.5211 9 7 2.7736 -0.0498 -4.7375 10 6 3.3220 -0.6842 -5.8552 11 6 4.1086 0.0338 -6.7473 12 6 4.6537 -0.5977 -7.8477 13 6 4.4080 -1.9406 -8.0685 14 6 3.6208 -2.6570 -7.1856 15 6 3.0768 -2.0331 -6.0803 16 6 2.0400 -0.7213 1.2492 17 1 1.6778 -1.7494 1.2491 18 6 1.5301 -0.0003 2.4992 19 6 2.0125 -0.7400 3.7492 20 6 3.5442 -0.7370 3.7801 21 7 4.0438 -1.2971 2.5171 22 6 4.9327 -2.3386 2.5190 23 1 4.9856 -3.0050 1.6708 24 6 5.7660 -2.5379 3.6112 25 7 6.2468 -3.7372 3.8620 26 14 6.2048 -1.1041 4.7252 27 1 5.1503 -0.9385 5.7576 28 1 7.5073 -1.3715 5.3865 29 1 6.3057 0.1377 3.9171 30 6 3.5719 -0.7180 1.2519 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 2.2490 -1.6317 -1.1526 35 1 2.4859 0.8747 -4.7971 36 1 4.2969 1.0837 -6.5781 37 1 5.2689 -0.0412 -8.5392 38 1 4.8323 -2.4311 -8.9322 39 1 3.4313 -3.7058 -7.3607 40 1 2.4625 -2.5933 -5.3910 41 1 1.9125 1.0204 2.5111 42 1 0.4404 0.0202 2.4875 43 1 1.6297 -0.2394 4.6385 44 1 1.6507 -1.7679 3.7260 45 1 3.9053 0.2851 3.8948 46 1 3.8940 -1.3460 4.6136 47 1 6.8294 -3.8764 4.6250 48 1 3.9401 -1.3147 0.4172 49 1 3.9354 0.3055 1.1604 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265703101.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:16 Heat of formation + Delta-G solvation = -16.668644 kcal Electronic energy + Delta-G solvation = -30178.273900 eV Core-core repulsion = 26106.015792 eV Total energy + Delta-G solvation = -4072.258108 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.25459 -39.80628 -38.60031 -37.99887 -35.83609 -35.00905 -33.09867 -31.42397 -31.18259 -30.76461 -30.02597 -29.03576 -25.83197 -25.09338 -23.78752 -23.10477 -22.30885 -21.83136 -20.81833 -20.46733 -19.59512 -18.72646 -17.74142 -16.93316 -16.76691 -16.31116 -16.10629 -15.71839 -15.39705 -14.88060 -14.61582 -14.46191 -14.16717 -13.96346 -13.89259 -13.69233 -13.61754 -13.25645 -13.04949 -12.98291 -12.72166 -12.41113 -12.23123 -12.10628 -11.78415 -11.64763 -11.50481 -11.44182 -11.34524 -10.75282 -10.68503 -10.59348 -10.48816 -10.19590 -9.98574 -9.74370 -9.64789 -9.41209 -9.24873 -9.19500 -8.55314 -8.49589 -7.01696 -5.96725 -3.28223 0.78835 1.13248 1.41846 2.11436 3.00634 3.31297 3.40006 3.49009 3.52588 3.55706 4.24128 4.53474 4.62274 4.65964 4.68341 4.89418 5.03500 5.08808 5.12701 5.18084 5.22031 5.27742 5.33354 5.38973 5.52675 5.55681 5.73171 5.78332 5.82517 5.89484 5.95928 6.00664 6.03316 6.04635 6.17237 6.18286 6.23570 6.27765 6.30795 6.37324 6.53206 6.58269 6.65447 6.69768 6.73942 6.79012 6.95145 7.19409 7.52576 7.82244 7.93866 8.31252 8.93526 9.71988 10.09101 11.19090 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012635 B = 0.002584 C = 0.002280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2215.581976 B =10832.053244 C =12278.336669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.145 3.855 3 H 0.092 0.908 4 N -0.683 5.683 5 C 0.511 3.489 6 O -0.524 6.524 7 C 0.507 3.493 8 O -0.493 6.493 9 N -0.648 5.648 10 C 0.140 3.860 11 C -0.140 4.140 12 C -0.103 4.103 13 C -0.133 4.133 14 C -0.102 4.102 15 C -0.119 4.119 16 C -0.114 4.114 17 H 0.080 0.920 18 C -0.102 4.102 19 C -0.134 4.134 20 C 0.123 3.877 21 N -0.604 5.604 22 C -0.261 4.261 23 H 0.085 0.915 24 C 0.025 3.975 25 N -0.903 5.903 26 Si 0.876 3.124 27 H -0.285 1.285 28 H -0.303 1.303 29 H -0.275 1.275 30 C 0.155 3.845 31 H 0.073 0.927 32 H 0.057 0.943 33 H 0.059 0.941 34 H 0.416 0.584 35 H 0.422 0.578 36 H 0.128 0.872 37 H 0.127 0.873 38 H 0.123 0.877 39 H 0.127 0.873 40 H 0.140 0.860 41 H 0.058 0.942 42 H 0.058 0.942 43 H 0.055 0.945 44 H 0.065 0.935 45 H 0.021 0.979 46 H 0.076 0.924 47 H 0.263 0.737 48 H 0.061 0.939 49 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.048 8.164 -19.435 23.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.041 3.959 3 H 0.110 0.890 4 N -0.335 5.335 5 C 0.291 3.709 6 O -0.401 6.401 7 C 0.289 3.711 8 O -0.366 6.366 9 N -0.295 5.295 10 C 0.046 3.954 11 C -0.161 4.161 12 C -0.121 4.121 13 C -0.152 4.152 14 C -0.120 4.120 15 C -0.139 4.139 16 C -0.135 4.135 17 H 0.098 0.902 18 C -0.140 4.140 19 C -0.173 4.173 20 C -0.002 4.002 21 N -0.327 5.327 22 C -0.389 4.389 23 H 0.103 0.897 24 C -0.174 4.174 25 N -0.545 5.545 26 Si 0.706 3.294 27 H -0.212 1.212 28 H -0.231 1.231 29 H -0.200 1.200 30 C 0.029 3.971 31 H 0.092 0.908 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.252 0.748 35 H 0.260 0.740 36 H 0.146 0.854 37 H 0.145 0.855 38 H 0.141 0.859 39 H 0.145 0.855 40 H 0.157 0.843 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.073 0.927 44 H 0.084 0.916 45 H 0.039 0.961 46 H 0.094 0.906 47 H 0.072 0.928 48 H 0.080 0.920 49 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -10.917 8.043 -19.239 23.538 hybrid contribution 0.427 0.786 0.719 1.148 sum -10.491 8.829 -18.519 23.043 Atomic orbital electron populations 1.22214 0.94930 1.02431 1.02519 1.21237 0.94035 0.97594 0.82991 0.89014 1.45941 1.63718 1.15243 1.08618 1.19743 0.79665 0.86968 0.84522 1.90761 1.49395 1.15068 1.84830 1.20446 0.78983 0.87196 0.84464 1.90808 1.46153 1.15018 1.84592 1.43128 1.60615 1.17159 1.08587 1.17770 0.96617 0.93153 0.87811 1.20955 0.98336 1.00551 0.96212 1.20956 0.99264 0.94884 0.97008 1.21199 0.99608 0.94487 0.99903 1.21100 0.97020 1.00057 0.93843 1.21329 1.00944 0.93672 0.97973 1.22002 0.99315 0.99883 0.92281 0.90169 1.21457 0.99361 0.98926 0.94249 1.21995 0.98504 1.00502 0.96308 1.21408 0.91877 0.96729 0.90219 1.44353 1.50104 1.38839 0.99396 1.18894 1.12411 1.02210 1.05428 0.89692 1.25217 0.98021 0.96339 0.97820 1.69893 1.35723 1.19841 1.29078 0.87126 0.76813 0.84780 0.80644 1.21222 1.23111 1.20048 1.20917 0.90071 0.96533 0.89617 0.90821 0.92441 0.92207 0.74753 0.73975 0.85447 0.85535 0.85867 0.85508 0.84271 0.92368 0.92371 0.92681 0.91647 0.96125 0.90573 0.92759 0.92039 0.96049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.75 9.13 37.15 0.34 -1.41 16 2 C 0.15 1.85 2.16 -67.93 -0.15 1.70 16 3 H 0.09 1.25 7.58 -51.93 -0.39 0.86 16 4 N -0.68 -8.71 4.47 -54.27 -0.24 -8.95 16 5 C 0.51 6.65 7.85 -11.63 -0.09 6.56 16 6 O -0.52 -7.46 16.14 5.49 0.09 -7.37 16 7 C 0.51 6.40 7.72 -11.63 -0.09 6.31 16 8 O -0.49 -7.24 13.93 5.47 0.08 -7.17 16 9 N -0.65 -6.76 5.32 -10.29 -0.05 -6.82 16 10 C 0.14 1.49 6.29 -83.74 -0.53 0.96 16 11 C -0.14 -1.23 9.97 -39.38 -0.39 -1.63 16 12 C -0.10 -0.81 10.04 -39.61 -0.40 -1.21 16 13 C -0.13 -1.07 10.04 -39.54 -0.40 -1.47 16 14 C -0.10 -0.94 10.04 -39.61 -0.40 -1.33 16 15 C -0.12 -1.32 8.69 -39.38 -0.34 -1.66 16 16 C -0.11 -1.70 1.97 -90.50 -0.18 -1.88 16 17 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 18 C -0.10 -1.45 4.85 -26.69 -0.13 -1.58 16 19 C -0.13 -2.26 6.08 -26.61 -0.16 -2.42 16 20 C 0.12 2.65 4.23 -3.71 -0.02 2.63 16 21 N -0.60 -14.12 2.78 -172.32 -0.48 -14.60 16 22 C -0.26 -7.27 10.01 -15.06 -0.15 -7.42 16 23 H 0.09 2.52 8.04 -52.49 -0.42 2.10 16 24 C 0.03 0.73 5.15 -17.43 -0.09 0.64 16 25 N -0.90 -27.65 13.97 55.49 0.78 -26.88 16 26 Si 0.88 22.36 24.61 -169.99 -4.18 18.17 16 27 H -0.28 -6.89 6.27 56.52 0.35 -6.54 16 28 H -0.30 -7.87 7.11 56.52 0.40 -7.47 16 29 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 30 C 0.15 2.96 5.56 -3.71 -0.02 2.94 16 31 H 0.07 0.72 6.40 -51.93 -0.33 0.39 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.42 5.29 7.90 -40.82 -0.32 4.97 16 35 H 0.42 3.58 8.30 -40.82 -0.34 3.24 16 36 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 37 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 38 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 39 H 0.13 0.93 8.06 -52.48 -0.42 0.50 16 40 H 0.14 1.67 6.25 -52.49 -0.33 1.34 16 41 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 42 H 0.06 0.69 6.36 -51.93 -0.33 0.36 16 43 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 45 H 0.02 0.44 7.45 -51.93 -0.39 0.06 16 46 H 0.08 1.81 4.39 -51.93 -0.23 1.59 16 47 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 48 H 0.06 1.20 7.44 -51.92 -0.39 0.81 16 49 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 LS Contribution 389.14 15.07 5.86 5.86 Total: -1.00 -32.75 389.14 -8.65 -41.40 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: -7.30 Total: 6.62 kcal Atomic # 6 Polarization: 2.92 SS G_CDS: -3.19 Total: -0.27 kcal Atomic # 7 Polarization: -57.24 SS G_CDS: 0.00 Total: -57.24 kcal Atomic # 8 Polarization: -14.71 SS G_CDS: 0.16 Total: -14.54 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -4.18 Total: 18.17 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.75 -8.65 -41.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265703101.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.732 kcal (2) G-P(sol) polarization free energy of solvation -32.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds