Wall clock time and date at job start Wed Apr 1 2020 04:53:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 109.46975 * 2 1 4 4 N 1.46499 * 109.47376 * 240.00325 * 2 1 3 5 5 C 1.34779 * 120.00151 * 84.99816 * 4 2 1 6 6 O 1.21357 * 119.99719 * 0.02562 * 5 4 2 7 7 C 1.49357 * 119.99657 * 180.02562 * 5 4 2 8 8 O 1.21376 * 120.00305 * 359.72560 * 7 5 4 9 9 N 1.34776 * 119.99256 * 180.02562 * 7 5 4 10 10 C 1.39733 * 119.99681 * 175.75509 * 9 7 5 11 11 C 1.38928 * 120.07458 * 214.89944 * 10 9 7 12 12 C 1.38094 * 119.91952 * 179.72197 * 11 10 9 13 13 C 1.38294 * 120.08051 * 0.55002 * 12 11 10 14 14 C 1.38293 * 120.14704 * 359.72317 * 13 12 11 15 15 C 1.38093 * 120.07965 * 0.02562 * 14 13 12 16 16 C 1.53000 * 109.47257 * 120.00189 * 2 1 3 17 17 H 1.09000 * 109.50056 * 60.06353 * 16 2 1 18 18 C 1.53047 * 109.49580 * 300.00160 * 16 2 1 19 19 C 1.53042 * 109.53568 * 178.68306 * 18 16 2 20 20 C 1.53200 * 109.31258 * 61.36449 * 19 18 16 21 21 N 1.46918 * 108.77533 * 305.36309 * 20 19 18 22 22 C 1.36932 * 120.63336 * 233.58834 * 21 20 19 23 23 H 1.07996 * 120.00534 * 154.45134 * 22 21 20 24 24 C 1.38812 * 119.99765 * 334.44701 * 22 21 20 25 25 N 1.31620 * 120.00208 * 155.13923 * 24 22 21 26 26 Si 1.86804 * 120.00129 * 335.14153 * 24 22 21 27 27 H 1.48504 * 109.46973 * 85.64932 * 26 24 22 28 28 H 1.48500 * 109.47273 * 205.64983 * 26 24 22 29 29 H 1.48501 * 109.47049 * 325.65202 * 26 24 22 30 30 C 1.46928 * 118.73873 * 53.61051 * 21 20 19 31 31 H 1.08996 * 109.47059 * 299.99677 * 1 2 3 32 32 H 1.09003 * 109.47397 * 60.00159 * 1 2 3 33 33 H 1.08999 * 109.47149 * 179.97438 * 1 2 3 34 34 H 0.96999 * 119.99832 * 265.00340 * 4 2 1 35 35 H 0.97003 * 120.00606 * 355.74968 * 9 7 5 36 36 H 1.08000 * 120.03898 * 359.97438 * 11 10 9 37 37 H 1.08001 * 119.96061 * 180.27603 * 12 11 10 38 38 H 1.08001 * 119.92734 * 179.74899 * 13 12 11 39 39 H 1.08005 * 119.95858 * 180.02562 * 14 13 12 40 40 H 1.07997 * 120.04059 * 180.02562 * 15 14 13 41 41 H 1.09003 * 109.45737 * 298.69996 * 18 16 2 42 42 H 1.08994 * 109.45702 * 58.67376 * 18 16 2 43 43 H 1.08997 * 109.49512 * 181.31248 * 19 18 16 44 44 H 1.09000 * 109.49599 * 301.38165 * 19 18 16 45 45 H 1.09000 * 109.58086 * 65.15058 * 20 19 18 46 46 H 1.08994 * 109.58324 * 185.57679 * 20 19 18 47 47 H 0.97004 * 120.00097 * 179.97438 * 25 24 22 48 48 H 1.09008 * 109.58430 * 186.60157 * 30 21 20 49 49 H 1.08998 * 109.58858 * 66.18168 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 2.1471 -0.0181 -2.3571 6 8 1.8588 1.1595 -2.4115 7 6 2.6444 -0.7224 -3.5767 8 8 2.9374 -1.8989 -3.5211 9 7 2.7736 -0.0498 -4.7375 10 6 3.3220 -0.6842 -5.8552 11 6 4.1086 0.0338 -6.7473 12 6 4.6537 -0.5977 -7.8477 13 6 4.4080 -1.9406 -8.0685 14 6 3.6208 -2.6570 -7.1856 15 6 3.0768 -2.0331 -6.0803 16 6 2.0400 -0.7213 1.2492 17 1 1.6778 -1.7494 1.2491 18 6 1.5301 -0.0003 2.4992 19 6 2.0125 -0.7400 3.7492 20 6 3.5442 -0.7370 3.7801 21 7 4.0438 -1.2971 2.5171 22 6 4.9327 -2.3386 2.5190 23 1 4.9856 -3.0050 1.6708 24 6 5.7660 -2.5379 3.6112 25 7 6.2468 -3.7372 3.8620 26 14 6.2048 -1.1041 4.7252 27 1 5.1503 -0.9385 5.7576 28 1 7.5073 -1.3715 5.3865 29 1 6.3057 0.1377 3.9171 30 6 3.5719 -0.7180 1.2519 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 2.2490 -1.6317 -1.1526 35 1 2.4859 0.8747 -4.7971 36 1 4.2969 1.0837 -6.5781 37 1 5.2689 -0.0412 -8.5392 38 1 4.8323 -2.4311 -8.9322 39 1 3.4313 -3.7058 -7.3607 40 1 2.4625 -2.5933 -5.3910 41 1 1.9125 1.0204 2.5111 42 1 0.4404 0.0202 2.4875 43 1 1.6297 -0.2394 4.6385 44 1 1.6507 -1.7679 3.7260 45 1 3.9053 0.2851 3.8948 46 1 3.8940 -1.3460 4.6136 47 1 6.8294 -3.8764 4.6250 48 1 3.9401 -1.3147 0.4172 49 1 3.9354 0.3055 1.1604 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265703101.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:15 Heat of formation + Delta-G solvation = -38.768810 kcal Electronic energy + Delta-G solvation = -30179.232235 eV Core-core repulsion = 26106.015792 eV Total energy + Delta-G solvation = -4073.216443 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -42.21953 -40.78739 -39.71746 -39.10958 -37.08718 -35.99567 -34.73455 -33.07980 -32.27731 -31.87154 -30.82847 -30.26725 -27.18654 -26.54523 -25.03315 -23.88066 -23.54834 -23.09602 -22.01375 -21.50857 -20.88276 -19.74129 -18.80479 -18.51917 -17.86276 -17.34813 -17.17033 -17.04458 -16.66264 -16.02594 -15.70002 -15.68579 -15.42960 -15.21065 -15.00703 -14.86492 -14.80138 -14.33089 -14.28312 -14.13297 -13.92584 -13.80869 -13.62199 -13.27792 -13.10995 -12.80542 -12.66815 -12.56569 -12.40549 -12.23699 -12.16222 -11.92291 -11.71291 -11.57056 -11.49641 -11.28135 -11.23212 -10.74460 -10.63056 -10.28557 -9.89808 -9.26187 -8.96691 -8.19158 -5.46096 -0.08855 0.43627 0.55281 1.16896 1.27432 1.39563 1.48273 2.00334 2.40226 2.47859 2.84583 3.00253 3.24913 3.30160 3.74573 3.90658 3.96668 3.99269 4.03900 4.22058 4.29158 4.31668 4.39285 4.46363 4.51429 4.52202 4.55579 4.59745 4.72849 4.73988 4.84974 4.93106 4.99502 5.08463 5.08677 5.10638 5.18896 5.21629 5.25372 5.26221 5.34584 5.41979 5.49172 5.57600 5.59450 5.83246 5.85193 6.03743 6.10261 6.22236 6.59354 6.79766 6.90728 7.62213 8.01757 9.00742 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012635 B = 0.002584 C = 0.002280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2215.581976 B =10832.053244 C =12278.336669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.152 3.848 3 H 0.088 0.912 4 N -0.684 5.684 5 C 0.515 3.485 6 O -0.535 6.535 7 C 0.506 3.494 8 O -0.522 6.522 9 N -0.634 5.634 10 C 0.115 3.885 11 C -0.142 4.142 12 C -0.103 4.103 13 C -0.132 4.132 14 C -0.112 4.112 15 C -0.142 4.142 16 C -0.101 4.101 17 H 0.073 0.927 18 C -0.098 4.098 19 C -0.127 4.127 20 C 0.114 3.886 21 N -0.618 5.618 22 C -0.250 4.250 23 H 0.050 0.950 24 C -0.033 4.033 25 N -0.952 5.952 26 Si 0.940 3.060 27 H -0.262 1.262 28 H -0.311 1.311 29 H -0.274 1.274 30 C 0.152 3.848 31 H 0.092 0.908 32 H 0.056 0.944 33 H 0.064 0.936 34 H 0.414 0.586 35 H 0.431 0.569 36 H 0.147 0.853 37 H 0.156 0.844 38 H 0.150 0.850 39 H 0.140 0.860 40 H 0.121 0.879 41 H 0.067 0.933 42 H 0.095 0.905 43 H 0.084 0.916 44 H 0.054 0.946 45 H 0.028 0.972 46 H 0.049 0.951 47 H 0.262 0.738 48 H 0.046 0.954 49 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.534 10.757 -20.274 26.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.048 3.952 3 H 0.106 0.894 4 N -0.336 5.336 5 C 0.295 3.705 6 O -0.413 6.413 7 C 0.288 3.712 8 O -0.397 6.397 9 N -0.281 5.281 10 C 0.022 3.978 11 C -0.161 4.161 12 C -0.121 4.121 13 C -0.150 4.150 14 C -0.131 4.131 15 C -0.162 4.162 16 C -0.121 4.121 17 H 0.092 0.908 18 C -0.136 4.136 19 C -0.166 4.166 20 C -0.010 4.010 21 N -0.343 5.343 22 C -0.380 4.380 23 H 0.068 0.932 24 C -0.228 4.228 25 N -0.598 5.598 26 Si 0.769 3.231 27 H -0.188 1.188 28 H -0.240 1.240 29 H -0.199 1.199 30 C 0.027 3.973 31 H 0.110 0.890 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.251 0.749 35 H 0.271 0.729 36 H 0.165 0.835 37 H 0.174 0.826 38 H 0.168 0.832 39 H 0.158 0.842 40 H 0.138 0.862 41 H 0.086 0.914 42 H 0.113 0.887 43 H 0.103 0.897 44 H 0.073 0.927 45 H 0.046 0.954 46 H 0.068 0.932 47 H 0.070 0.930 48 H 0.065 0.935 49 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -12.452 10.696 -20.102 25.953 hybrid contribution 0.905 -0.053 0.813 1.218 sum -11.546 10.643 -19.289 24.873 Atomic orbital electron populations 1.22166 0.92721 1.03072 1.03386 1.21187 0.95570 0.96719 0.81717 0.89395 1.46000 1.63568 1.15210 1.08782 1.19757 0.79350 0.86737 0.84630 1.90748 1.50066 1.15399 1.85047 1.20412 0.78931 0.86895 0.84922 1.90801 1.47768 1.16089 1.85009 1.43042 1.59722 1.17353 1.07996 1.18006 0.98008 0.93393 0.88388 1.21250 0.97523 1.01496 0.95881 1.21375 0.98795 0.95042 0.96901 1.21569 0.98564 0.94751 1.00129 1.21342 0.97181 1.00958 0.93594 1.21348 1.01928 0.94193 0.98754 1.21808 0.95743 1.00259 0.94304 0.90823 1.21485 1.01574 0.98591 0.91916 1.21912 0.94671 1.00883 0.99130 1.21513 0.95291 0.96023 0.88218 1.44480 1.49736 1.38318 1.01726 1.18836 1.12758 1.02479 1.03895 0.93248 1.25819 0.98598 0.98360 1.00006 1.70015 1.37490 1.21838 1.30472 0.86076 0.76453 0.81233 0.79342 1.18823 1.23976 1.19891 1.21056 0.93150 0.95793 0.87333 0.88965 0.92525 0.91698 0.74898 0.72926 0.83485 0.82605 0.83240 0.84230 0.86156 0.91402 0.88685 0.89722 0.92686 0.95395 0.93245 0.92953 0.93528 0.95775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.86 9.13 71.98 0.66 -2.20 16 2 C 0.15 3.56 2.16 44.99 0.10 3.66 16 3 H 0.09 2.20 7.58 -2.38 -0.02 2.18 16 4 N -0.68 -17.21 4.47 -443.96 -1.99 -19.19 16 5 C 0.52 13.29 7.85 87.24 0.68 13.97 16 6 O -0.53 -14.72 16.14 -3.27 -0.05 -14.77 16 7 C 0.51 13.08 7.72 87.24 0.67 13.75 16 8 O -0.52 -16.12 13.93 -3.33 -0.05 -16.17 16 9 N -0.63 -13.26 5.32 -304.83 -1.62 -14.88 16 10 C 0.12 2.44 6.29 38.21 0.24 2.68 16 11 C -0.14 -2.27 9.97 22.40 0.22 -2.05 16 12 C -0.10 -1.37 10.04 22.25 0.22 -1.15 16 13 C -0.13 -1.86 10.04 22.30 0.22 -1.64 16 14 C -0.11 -2.02 10.04 22.25 0.22 -1.80 16 15 C -0.14 -3.25 8.69 22.40 0.19 -3.05 16 16 C -0.10 -2.82 1.97 -10.71 -0.02 -2.85 16 17 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 18 C -0.10 -2.42 4.85 30.62 0.15 -2.27 16 19 C -0.13 -3.91 6.08 30.68 0.19 -3.73 16 20 C 0.11 4.73 4.23 86.37 0.37 5.10 16 21 N -0.62 -29.00 2.78 -699.10 -1.94 -30.94 16 22 C -0.25 -14.38 10.01 84.03 0.84 -13.54 16 23 H 0.05 3.12 8.04 -2.91 -0.02 3.10 16 24 C -0.03 -1.94 5.15 84.86 0.44 -1.50 16 25 N -0.95 -60.55 13.97 21.65 0.30 -60.25 16 26 Si 0.94 46.97 24.61 68.60 1.69 48.66 16 27 H -0.26 -12.03 6.27 99.48 0.62 -11.41 16 28 H -0.31 -15.81 7.11 99.48 0.71 -15.10 16 29 H -0.27 -13.43 7.11 99.48 0.71 -12.73 16 30 C 0.15 5.76 5.56 86.36 0.48 6.24 16 31 H 0.09 1.37 6.40 -2.39 -0.02 1.36 16 32 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.41 10.79 7.90 -92.71 -0.73 10.06 16 35 H 0.43 7.10 8.30 -92.71 -0.77 6.33 16 36 H 0.15 1.69 8.06 -2.91 -0.02 1.66 16 37 H 0.16 1.14 8.06 -2.91 -0.02 1.11 16 38 H 0.15 1.28 8.06 -2.91 -0.02 1.26 16 39 H 0.14 2.00 8.06 -2.91 -0.02 1.98 16 40 H 0.12 3.13 6.25 -2.91 -0.02 3.11 16 41 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.09 1.74 6.36 -2.39 -0.02 1.72 16 43 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 44 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 45 H 0.03 1.13 7.45 -2.39 -0.02 1.11 16 46 H 0.05 2.30 4.39 -2.39 -0.01 2.29 16 47 H 0.26 15.80 8.31 -92.71 -0.77 15.03 16 48 H 0.05 1.87 7.44 -2.38 -0.02 1.85 16 49 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 Total: -1.00 -73.86 389.14 1.62 -72.24 By element: Atomic # 1 Polarization: 26.29 SS G_CDS: -0.60 Total: 25.69 kcal Atomic # 6 Polarization: 3.74 SS G_CDS: 5.88 Total: 9.62 kcal Atomic # 7 Polarization: -120.02 SS G_CDS: -5.25 Total: -125.27 kcal Atomic # 8 Polarization: -30.84 SS G_CDS: -0.10 Total: -30.94 kcal Atomic # 14 Polarization: 46.97 SS G_CDS: 1.69 Total: 48.66 kcal Total: -73.86 1.62 -72.24 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265703101.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.469 kcal (2) G-P(sol) polarization free energy of solvation -73.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds