Wall clock time and date at job start Wed Apr 1 2020 04:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09008 * 109.46732 * 2 1 4 4 C 1.52997 * 109.47340 * 240.00354 * 2 1 3 5 5 C 1.52996 * 109.47408 * 175.00048 * 4 2 1 6 6 N 1.46899 * 109.47290 * 179.97438 * 5 4 2 7 7 C 1.46895 * 111.00435 * 179.97438 * 6 5 4 8 8 C 1.50702 * 109.47611 * 179.97438 * 7 6 5 9 9 O 1.21288 * 119.99609 * 0.02562 * 8 7 6 10 10 N 1.34775 * 119.99858 * 180.02562 * 8 7 6 11 11 C 1.37105 * 119.99527 * 179.97438 * 10 8 7 12 12 H 1.07999 * 120.00054 * 0.02562 * 11 10 8 13 13 C 1.38946 * 119.99700 * 180.02562 * 11 10 8 14 14 N 1.31418 * 120.00198 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99873 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47138 * 60.00002 * 15 13 11 17 17 H 1.48504 * 109.47201 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.46888 * 300.00031 * 15 13 11 19 19 N 1.46494 * 109.47404 * 120.00001 * 2 1 3 20 20 C 1.34779 * 120.00092 * 275.00396 * 19 2 1 21 21 O 1.21279 * 119.99879 * 359.97438 * 20 19 2 22 22 C 1.50699 * 120.00108 * 179.97438 * 20 19 2 23 23 H 1.09002 * 112.88483 * 51.66678 * 22 20 19 24 24 C 1.52265 * 113.20426 * 183.02597 * 22 20 19 25 25 C 1.50566 * 87.22647 * 114.71873 * 24 22 20 26 26 C 1.38806 * 147.30000 * 179.57692 * 25 24 22 27 27 C 1.38073 * 120.08994 * 179.74197 * 26 25 24 28 28 C 1.38234 * 119.98008 * 0.26077 * 27 26 25 29 29 C 1.38064 * 119.97913 * 359.97438 * 28 27 26 30 30 C 1.37717 * 92.77078 * 359.79691 * 25 24 22 31 31 H 1.08998 * 109.46898 * 300.00007 * 1 2 3 32 32 H 1.08996 * 109.46796 * 60.00169 * 1 2 3 33 33 H 1.08995 * 109.46576 * 180.02562 * 1 2 3 34 34 H 1.09006 * 109.46810 * 294.99907 * 4 2 1 35 35 H 1.09006 * 109.47314 * 54.99429 * 4 2 1 36 36 H 1.09001 * 109.47100 * 299.99268 * 5 4 2 37 37 H 1.08994 * 109.47237 * 59.99730 * 5 4 2 38 38 H 1.00899 * 111.00272 * 303.95413 * 6 5 4 39 39 H 1.08999 * 109.47017 * 300.00256 * 7 6 5 40 40 H 1.09004 * 109.47021 * 59.99841 * 7 6 5 41 41 H 0.96996 * 119.99948 * 0.02562 * 10 8 7 42 42 H 0.97000 * 119.99613 * 180.02562 * 14 13 11 43 43 H 0.97000 * 120.00181 * 94.99513 * 19 2 1 44 44 H 1.08995 * 113.97789 * 0.07562 * 24 22 20 45 45 H 1.08999 * 113.27893 * 229.25706 * 24 22 20 46 46 H 1.08002 * 119.95920 * 0.02562 * 26 25 24 47 47 H 1.07998 * 120.00450 * 180.23221 * 27 26 25 48 48 H 1.07993 * 120.00610 * 179.97438 * 28 27 26 49 49 H 1.08000 * 119.95055 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0401 -0.7211 -1.2492 5 6 3.5649 -0.6132 -1.3137 6 7 4.0546 -1.3061 -2.5128 7 6 5.5181 -1.2226 -2.6084 8 6 5.9826 -1.9435 -3.8476 9 8 5.1740 -2.4742 -4.5794 10 7 7.2965 -1.9985 -4.1426 11 6 7.7191 -2.6548 -5.2697 12 1 6.9991 -3.1274 -5.9214 13 6 9.0738 -2.7119 -5.5735 14 7 9.9499 -2.1373 -4.7803 15 14 9.6495 -3.6055 -7.1096 16 1 9.0395 -2.9744 -8.3074 17 1 11.1291 -3.5216 -7.2058 18 1 9.2377 -5.0304 -7.0369 19 7 2.0184 -0.6906 1.1961 20 6 2.1471 -0.0182 2.3571 21 8 1.8590 1.1586 2.4115 22 6 2.6490 -0.7288 3.5877 23 1 3.5812 -1.2669 3.4159 24 6 2.6647 0.1560 4.8268 25 6 1.6135 -0.7558 5.4017 26 6 0.7844 -1.0522 6.4748 27 6 -0.0653 -2.1388 6.4136 28 6 -0.0869 -2.9361 5.2846 29 6 0.7409 -2.6452 4.2186 30 6 1.5958 -1.5532 4.2790 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3632 -1.0276 0.0005 34 1 1.7517 -1.7715 -1.2056 35 1 1.6054 -0.2616 -2.1370 36 1 3.8532 0.4371 -1.3574 37 1 3.9995 -1.0727 -0.4260 38 1 3.7453 -2.2664 -2.5273 39 1 5.8196 -0.1765 -2.6616 40 1 5.9666 -1.6857 -1.7295 41 1 7.9432 -1.5744 -3.5570 42 1 10.8956 -2.1769 -4.9927 43 1 2.2491 -1.6317 1.1526 44 1 2.3117 1.1719 4.6502 45 1 3.6114 0.1250 5.3662 46 1 0.8005 -0.4293 7.3569 47 1 -0.7126 -2.3659 7.2478 48 1 -0.7510 -3.7863 5.2365 49 1 0.7240 -3.2687 3.3370 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268395351.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:47 Heat of formation + Delta-G solvation = -17.673846 kcal Electronic energy + Delta-G solvation = -28626.163059 eV Core-core repulsion = 24553.861362 eV Total energy + Delta-G solvation = -4072.301697 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.51946 -39.52415 -38.32341 -37.06046 -35.65682 -34.98102 -33.83467 -31.97034 -31.23408 -31.07625 -29.30755 -28.00908 -26.28348 -25.70498 -24.11636 -22.85504 -22.19647 -21.51640 -20.94587 -20.08824 -19.23134 -17.92155 -17.81150 -17.15837 -16.60057 -16.17547 -15.75564 -15.46110 -15.43294 -14.80817 -14.74607 -14.53084 -14.37735 -13.96199 -13.80600 -13.64542 -13.43486 -13.41431 -13.08712 -12.97220 -12.66526 -12.57269 -12.31274 -12.25761 -12.14051 -11.70822 -11.52843 -11.40422 -11.31807 -11.15857 -11.04603 -10.98027 -10.92988 -10.44838 -10.24630 -10.21963 -9.50815 -9.36841 -9.21442 -8.97932 -8.47368 -8.07478 -7.96731 -6.42277 -3.83350 0.86958 0.96879 2.28755 2.85061 3.19639 3.25391 3.29755 3.35669 3.75660 3.89828 3.98772 4.02653 4.04304 4.24507 4.49855 4.64227 4.69246 4.75388 4.81606 4.82263 4.97393 5.16709 5.17604 5.19064 5.22696 5.26834 5.30002 5.35258 5.47184 5.50151 5.51721 5.58464 5.70100 5.73222 5.76894 5.89829 5.93977 5.96026 5.99283 6.05715 6.08781 6.26015 6.28533 6.29331 6.55535 7.18775 7.20101 7.54319 7.64238 7.92070 8.05356 8.60488 9.16968 9.53452 10.04891 10.75336 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.017077 B = 0.001645 C = 0.001596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.233414 B =17013.032182 C =17540.083663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.142 3.858 3 H 0.091 0.909 4 C -0.125 4.125 5 C 0.060 3.940 6 N -0.669 5.669 7 C 0.051 3.949 8 C 0.440 3.560 9 O -0.584 6.584 10 N -0.563 5.563 11 C -0.301 4.301 12 H 0.103 0.897 13 C 0.022 3.978 14 N -0.902 5.902 15 Si 0.931 3.069 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.274 1.274 19 N -0.719 5.719 20 C 0.533 3.467 21 O -0.534 6.534 22 C -0.070 4.070 23 H 0.123 0.877 24 C -0.060 4.060 25 C -0.116 4.116 26 C -0.097 4.097 27 C -0.112 4.112 28 C -0.121 4.121 29 C -0.085 4.085 30 C -0.126 4.126 31 H 0.058 0.942 32 H 0.068 0.932 33 H 0.056 0.944 34 H 0.068 0.932 35 H 0.091 0.909 36 H 0.071 0.929 37 H 0.025 0.975 38 H 0.348 0.652 39 H 0.085 0.915 40 H 0.042 0.958 41 H 0.392 0.608 42 H 0.272 0.728 43 H 0.400 0.600 44 H 0.111 0.889 45 H 0.097 0.903 46 H 0.120 0.880 47 H 0.127 0.873 48 H 0.127 0.873 49 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.560 1.928 23.635 29.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.038 3.962 3 H 0.109 0.891 4 C -0.163 4.163 5 C -0.070 4.070 6 N -0.302 5.302 7 C -0.082 4.082 8 C 0.226 3.774 9 O -0.468 6.468 10 N -0.200 5.200 11 C -0.430 4.430 12 H 0.120 0.880 13 C -0.179 4.179 14 N -0.543 5.543 15 Si 0.758 3.242 16 H -0.199 1.199 17 H -0.210 1.210 18 H -0.199 1.199 19 N -0.370 5.370 20 C 0.318 3.682 21 O -0.410 6.410 22 C -0.091 4.091 23 H 0.141 0.859 24 C -0.097 4.097 25 C -0.116 4.116 26 C -0.115 4.115 27 C -0.130 4.130 28 C -0.139 4.139 29 C -0.103 4.103 30 C -0.127 4.127 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.075 0.925 34 H 0.087 0.913 35 H 0.110 0.890 36 H 0.089 0.911 37 H 0.043 0.957 38 H 0.167 0.833 39 H 0.104 0.896 40 H 0.060 0.940 41 H 0.225 0.775 42 H 0.082 0.918 43 H 0.235 0.765 44 H 0.129 0.871 45 H 0.116 0.884 46 H 0.138 0.862 47 H 0.145 0.855 48 H 0.145 0.855 49 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -18.205 2.971 22.720 29.265 hybrid contribution 1.185 -1.402 0.305 1.861 sum -17.020 1.569 23.025 28.676 Atomic orbital electron populations 1.22149 0.95046 1.02180 1.02598 1.21021 0.94066 0.97725 0.83405 0.89093 1.21882 0.95875 1.01255 0.97287 1.21962 0.94242 0.99824 0.90959 1.60048 1.09838 1.21647 1.38645 1.21663 0.88357 1.01292 0.96842 1.19814 0.83336 0.85940 0.88347 1.90518 1.53334 1.50598 1.52357 1.41861 1.05420 1.48843 1.23878 1.19662 0.91969 1.30243 1.01140 0.87962 1.25266 0.95618 0.97807 0.99234 1.69609 1.02565 1.44212 1.37927 0.85909 0.77245 0.79733 0.81280 1.19871 1.20974 1.19929 1.46108 1.67200 1.14092 1.09644 1.20012 0.77307 0.86967 0.83874 1.90699 1.49802 1.15838 1.84678 1.21196 0.98280 0.95949 0.93689 0.85917 1.21451 0.97268 0.99158 0.91794 1.21845 0.97382 0.97674 0.94749 1.20445 0.95720 0.97616 0.97762 1.21043 0.98656 0.94966 0.98326 1.20995 0.99309 1.00098 0.93478 1.20451 0.95010 0.95971 0.98883 1.21330 0.98050 0.96293 0.96994 0.92261 0.91306 0.92459 0.91334 0.89044 0.91054 0.95655 0.83290 0.89630 0.93995 0.77454 0.91814 0.76525 0.87119 0.88441 0.86152 0.85533 0.85472 0.86190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.38 9.48 37.16 0.35 -1.03 16 2 C 0.14 1.29 2.57 -67.93 -0.17 1.11 16 3 H 0.09 0.98 7.58 -51.92 -0.39 0.58 16 4 C -0.12 -1.16 5.01 -26.73 -0.13 -1.30 16 5 C 0.06 0.69 5.57 -3.83 -0.02 0.67 16 6 N -0.67 -10.47 6.13 -115.06 -0.70 -11.17 16 7 C 0.05 0.90 6.17 -4.98 -0.03 0.87 16 8 C 0.44 10.39 7.82 -10.99 -0.09 10.31 16 9 O -0.58 -15.83 15.78 5.55 0.09 -15.75 16 10 N -0.56 -14.30 5.29 -10.96 -0.06 -14.36 16 11 C -0.30 -8.40 9.68 -14.93 -0.14 -8.54 16 12 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 13 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 14 N -0.90 -24.52 13.05 55.50 0.72 -23.79 16 15 Si 0.93 21.03 29.55 -169.99 -5.02 16.00 16 16 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 17 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 18 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 19 N -0.72 -6.00 4.53 -53.81 -0.24 -6.24 16 20 C 0.53 5.38 7.31 -10.98 -0.08 5.30 16 21 O -0.53 -7.26 15.33 5.56 0.09 -7.18 16 22 C -0.07 -0.56 4.30 -93.66 -0.40 -0.96 16 23 H 0.12 0.74 8.14 -51.93 -0.42 0.31 16 24 C -0.06 -0.47 7.66 -28.61 -0.22 -0.69 16 25 C -0.12 -1.02 7.42 -104.96 -0.78 -1.80 16 26 C -0.10 -0.76 10.06 -39.43 -0.40 -1.15 16 27 C -0.11 -0.77 10.04 -39.64 -0.40 -1.17 16 28 C -0.12 -0.84 10.04 -39.65 -0.40 -1.24 16 29 C -0.09 -0.66 10.06 -39.43 -0.40 -1.06 16 30 C -0.13 -1.08 6.90 -104.96 -0.72 -1.81 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.03 0.27 7.75 -51.93 -0.40 -0.13 16 38 H 0.35 5.52 8.43 -39.29 -0.33 5.18 16 39 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 40 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.39 9.51 7.90 -40.82 -0.32 9.19 16 42 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 43 H 0.40 2.58 8.60 -40.82 -0.35 2.23 16 44 H 0.11 1.02 7.01 -51.93 -0.36 0.66 16 45 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.12 0.72 8.06 -52.49 -0.42 0.29 16 47 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 48 H 0.13 0.62 8.06 -52.49 -0.42 0.19 16 49 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 LS Contribution 412.97 15.07 6.22 6.22 Total: -1.00 -33.91 412.97 -10.63 -44.55 By element: Atomic # 1 Polarization: 21.31 SS G_CDS: -7.59 Total: 13.71 kcal Atomic # 6 Polarization: 2.14 SS G_CDS: -4.13 Total: -1.99 kcal Atomic # 7 Polarization: -55.29 SS G_CDS: -0.28 Total: -55.57 kcal Atomic # 8 Polarization: -23.10 SS G_CDS: 0.17 Total: -22.92 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -33.91 -10.63 -44.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268395351.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.875 kcal (2) G-P(sol) polarization free energy of solvation -33.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds