Wall clock time and date at job start Wed Apr 1 2020 04:21:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09008 * 109.46732 * 2 1 4 4 C 1.52997 * 109.47340 * 240.00354 * 2 1 3 5 5 C 1.52996 * 109.47408 * 175.00048 * 4 2 1 6 6 N 1.46899 * 109.47290 * 179.97438 * 5 4 2 7 7 C 1.46895 * 111.00435 * 179.97438 * 6 5 4 8 8 C 1.50702 * 109.47611 * 179.97438 * 7 6 5 9 9 O 1.21288 * 119.99609 * 0.02562 * 8 7 6 10 10 N 1.34775 * 119.99858 * 180.02562 * 8 7 6 11 11 C 1.37105 * 119.99527 * 179.97438 * 10 8 7 12 12 H 1.07999 * 120.00054 * 0.02562 * 11 10 8 13 13 C 1.38946 * 119.99700 * 180.02562 * 11 10 8 14 14 N 1.31418 * 120.00198 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99873 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47138 * 60.00002 * 15 13 11 17 17 H 1.48504 * 109.47201 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.46888 * 300.00031 * 15 13 11 19 19 N 1.46494 * 109.47404 * 120.00001 * 2 1 3 20 20 C 1.34779 * 120.00092 * 275.00396 * 19 2 1 21 21 O 1.21279 * 119.99879 * 359.97438 * 20 19 2 22 22 C 1.50699 * 120.00108 * 179.97438 * 20 19 2 23 23 H 1.09002 * 112.88483 * 51.66678 * 22 20 19 24 24 C 1.52265 * 113.20426 * 183.02597 * 22 20 19 25 25 C 1.50566 * 87.22647 * 114.71873 * 24 22 20 26 26 C 1.38806 * 147.30000 * 179.57692 * 25 24 22 27 27 C 1.38073 * 120.08994 * 179.74197 * 26 25 24 28 28 C 1.38234 * 119.98008 * 0.26077 * 27 26 25 29 29 C 1.38064 * 119.97913 * 359.97438 * 28 27 26 30 30 C 1.37717 * 92.77078 * 359.79691 * 25 24 22 31 31 H 1.08998 * 109.46898 * 300.00007 * 1 2 3 32 32 H 1.08996 * 109.46796 * 60.00169 * 1 2 3 33 33 H 1.08995 * 109.46576 * 180.02562 * 1 2 3 34 34 H 1.09006 * 109.46810 * 294.99907 * 4 2 1 35 35 H 1.09006 * 109.47314 * 54.99429 * 4 2 1 36 36 H 1.09001 * 109.47100 * 299.99268 * 5 4 2 37 37 H 1.08994 * 109.47237 * 59.99730 * 5 4 2 38 38 H 1.00899 * 111.00272 * 303.95413 * 6 5 4 39 39 H 1.08999 * 109.47017 * 300.00256 * 7 6 5 40 40 H 1.09004 * 109.47021 * 59.99841 * 7 6 5 41 41 H 0.96996 * 119.99948 * 0.02562 * 10 8 7 42 42 H 0.97000 * 119.99613 * 180.02562 * 14 13 11 43 43 H 0.97000 * 120.00181 * 94.99513 * 19 2 1 44 44 H 1.08995 * 113.97789 * 0.07562 * 24 22 20 45 45 H 1.08999 * 113.27893 * 229.25706 * 24 22 20 46 46 H 1.08002 * 119.95920 * 0.02562 * 26 25 24 47 47 H 1.07998 * 120.00450 * 180.23221 * 27 26 25 48 48 H 1.07993 * 120.00610 * 179.97438 * 28 27 26 49 49 H 1.08000 * 119.95055 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0401 -0.7211 -1.2492 5 6 3.5649 -0.6132 -1.3137 6 7 4.0546 -1.3061 -2.5128 7 6 5.5181 -1.2226 -2.6084 8 6 5.9826 -1.9435 -3.8476 9 8 5.1740 -2.4742 -4.5794 10 7 7.2965 -1.9985 -4.1426 11 6 7.7191 -2.6548 -5.2697 12 1 6.9991 -3.1274 -5.9214 13 6 9.0738 -2.7119 -5.5735 14 7 9.9499 -2.1373 -4.7803 15 14 9.6495 -3.6055 -7.1096 16 1 9.0395 -2.9744 -8.3074 17 1 11.1291 -3.5216 -7.2058 18 1 9.2377 -5.0304 -7.0369 19 7 2.0184 -0.6906 1.1961 20 6 2.1471 -0.0182 2.3571 21 8 1.8590 1.1586 2.4115 22 6 2.6490 -0.7288 3.5877 23 1 3.5812 -1.2669 3.4159 24 6 2.6647 0.1560 4.8268 25 6 1.6135 -0.7558 5.4017 26 6 0.7844 -1.0522 6.4748 27 6 -0.0653 -2.1388 6.4136 28 6 -0.0869 -2.9361 5.2846 29 6 0.7409 -2.6452 4.2186 30 6 1.5958 -1.5532 4.2790 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3632 -1.0276 0.0005 34 1 1.7517 -1.7715 -1.2056 35 1 1.6054 -0.2616 -2.1370 36 1 3.8532 0.4371 -1.3574 37 1 3.9995 -1.0727 -0.4260 38 1 3.7453 -2.2664 -2.5273 39 1 5.8196 -0.1765 -2.6616 40 1 5.9666 -1.6857 -1.7295 41 1 7.9432 -1.5744 -3.5570 42 1 10.8956 -2.1769 -4.9927 43 1 2.2491 -1.6317 1.1526 44 1 2.3117 1.1719 4.6502 45 1 3.6114 0.1250 5.3662 46 1 0.8005 -0.4293 7.3569 47 1 -0.7126 -2.3659 7.2478 48 1 -0.7510 -3.7863 5.2365 49 1 0.7240 -3.2687 3.3370 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268395351.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:45 Heat of formation + Delta-G solvation = -40.674777 kcal Electronic energy + Delta-G solvation = -28627.160454 eV Core-core repulsion = 24553.861362 eV Total energy + Delta-G solvation = -4073.299092 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.15110 -40.30206 -40.08733 -38.00496 -36.43007 -36.11781 -35.68119 -33.28865 -32.76420 -31.65229 -30.35601 -28.58005 -27.79311 -26.41014 -25.72427 -23.61073 -23.06429 -22.18967 -21.71947 -21.06391 -20.69833 -19.90223 -18.53836 -17.84074 -17.73413 -17.39281 -16.90496 -16.49439 -16.27970 -16.16283 -15.93438 -15.47572 -15.38431 -15.27312 -15.08494 -14.90796 -14.32347 -14.03554 -13.93138 -13.80240 -13.67327 -13.50378 -13.44223 -13.28685 -13.06744 -12.91090 -12.86791 -12.77098 -12.43537 -12.26831 -12.13708 -12.05182 -11.94761 -11.79936 -11.52280 -11.49881 -11.00968 -10.36601 -10.12850 -10.01822 -9.77132 -9.55761 -9.31437 -8.46469 -5.95543 0.31046 0.41453 1.40316 1.42372 1.52644 1.53320 2.05032 2.15120 2.29369 2.80202 2.89030 3.16141 3.20711 3.42457 3.44661 3.49515 3.81585 3.92269 4.03894 4.18459 4.19767 4.21626 4.27132 4.31252 4.43256 4.46665 4.53270 4.61169 4.64586 4.67410 4.68553 4.78870 4.81261 4.92827 4.94252 5.00585 5.08562 5.14724 5.18950 5.29482 5.40827 5.44110 5.54133 5.55957 5.72401 5.88725 6.03777 6.10032 6.43467 6.50958 6.59884 7.12297 7.19412 7.55999 8.11042 8.70603 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.017077 B = 0.001645 C = 0.001596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.233414 B =17013.032182 C =17540.083663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.148 3.852 3 H 0.073 0.927 4 C -0.113 4.113 5 C 0.063 3.937 6 N -0.683 5.683 7 C 0.065 3.935 8 C 0.437 3.563 9 O -0.623 6.623 10 N -0.573 5.573 11 C -0.336 4.336 12 H 0.080 0.920 13 C -0.013 4.013 14 N -0.920 5.920 15 Si 0.994 3.006 16 H -0.273 1.273 17 H -0.271 1.271 18 H -0.271 1.271 19 N -0.709 5.709 20 C 0.531 3.469 21 O -0.575 6.575 22 C -0.064 4.064 23 H 0.145 0.855 24 C -0.060 4.060 25 C -0.139 4.139 26 C -0.112 4.112 27 C -0.116 4.116 28 C -0.127 4.127 29 C -0.097 4.097 30 C -0.139 4.139 31 H 0.040 0.960 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.067 0.933 37 H 0.041 0.959 38 H 0.346 0.654 39 H 0.099 0.901 40 H 0.067 0.933 41 H 0.396 0.604 42 H 0.278 0.722 43 H 0.412 0.588 44 H 0.092 0.908 45 H 0.116 0.884 46 H 0.133 0.867 47 H 0.149 0.851 48 H 0.149 0.851 49 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.702 0.860 24.414 30.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.044 3.956 3 H 0.091 0.909 4 C -0.151 4.151 5 C -0.066 4.066 6 N -0.316 5.316 7 C -0.067 4.067 8 C 0.225 3.775 9 O -0.509 6.509 10 N -0.210 5.210 11 C -0.465 4.465 12 H 0.098 0.902 13 C -0.213 4.213 14 N -0.561 5.561 15 Si 0.817 3.183 16 H -0.198 1.198 17 H -0.195 1.195 18 H -0.196 1.196 19 N -0.360 5.360 20 C 0.318 3.682 21 O -0.454 6.454 22 C -0.085 4.085 23 H 0.163 0.837 24 C -0.097 4.097 25 C -0.139 4.139 26 C -0.130 4.130 27 C -0.134 4.134 28 C -0.145 4.145 29 C -0.114 4.114 30 C -0.140 4.140 31 H 0.060 0.940 32 H 0.094 0.906 33 H 0.087 0.913 34 H 0.101 0.899 35 H 0.105 0.895 36 H 0.085 0.915 37 H 0.060 0.940 38 H 0.165 0.835 39 H 0.117 0.883 40 H 0.085 0.915 41 H 0.230 0.770 42 H 0.087 0.913 43 H 0.249 0.751 44 H 0.110 0.890 45 H 0.134 0.866 46 H 0.151 0.849 47 H 0.167 0.833 48 H 0.167 0.833 49 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -18.342 1.892 23.521 29.887 hybrid contribution 1.150 -1.060 0.114 1.569 sum -17.192 0.832 23.635 29.238 Atomic orbital electron populations 1.22089 0.94472 1.02764 1.02082 1.20885 0.94406 0.96838 0.83521 0.90902 1.21758 0.94225 1.02061 0.97044 1.22007 0.95553 0.99117 0.89912 1.60032 1.08532 1.21880 1.41149 1.21515 0.89797 1.01152 0.94267 1.20882 0.82337 0.84848 0.89474 1.90485 1.54148 1.52100 1.54189 1.41938 1.06339 1.49160 1.23595 1.19651 0.92372 1.32061 1.02461 0.90231 1.26053 0.95175 0.98085 1.01968 1.69670 1.02943 1.44444 1.39044 0.84978 0.77278 0.78499 0.77519 1.19788 1.19522 1.19575 1.46035 1.66397 1.14569 1.09002 1.20395 0.76631 0.86526 0.84688 1.90682 1.51680 1.17704 1.85364 1.21197 0.99029 0.95798 0.92479 0.83719 1.21446 0.98036 0.98084 0.92152 1.22078 0.98136 0.98200 0.95497 1.20742 0.95804 0.98281 0.98125 1.21389 0.98487 0.94436 0.99095 1.21348 0.99264 1.00656 0.93190 1.20738 0.94923 0.95994 0.99793 1.21455 0.98643 0.96839 0.97060 0.94045 0.90559 0.91275 0.89933 0.89524 0.91495 0.94042 0.83471 0.88291 0.91504 0.76994 0.91289 0.75103 0.88965 0.86629 0.84945 0.83292 0.83334 0.84750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.51 9.48 71.98 0.68 -1.83 16 2 C 0.15 2.52 2.57 44.99 0.12 2.64 16 3 H 0.07 1.55 7.58 -2.38 -0.02 1.53 16 4 C -0.11 -1.90 5.01 30.59 0.15 -1.74 16 5 C 0.06 1.33 5.57 86.30 0.48 1.81 16 6 N -0.68 -20.30 6.13 -517.95 -3.17 -23.48 16 7 C 0.07 2.18 6.17 85.56 0.53 2.71 16 8 C 0.44 20.62 7.82 87.66 0.69 21.31 16 9 O -0.62 -34.19 15.78 -3.06 -0.05 -34.24 16 10 N -0.57 -29.32 5.29 -306.99 -1.62 -30.94 16 11 C -0.34 -19.04 9.68 84.04 0.81 -18.23 16 12 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 13 C -0.01 -0.69 5.50 84.92 0.47 -0.23 16 14 N -0.92 -49.51 13.05 21.66 0.28 -49.23 16 15 Si 0.99 42.70 29.55 68.60 2.03 44.73 16 16 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 17 H -0.27 -10.95 7.11 99.48 0.71 -10.25 16 18 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 19 N -0.71 -10.84 4.53 -442.53 -2.00 -12.84 16 20 C 0.53 10.45 7.31 87.66 0.64 11.09 16 21 O -0.57 -15.98 15.33 -3.02 -0.05 -16.02 16 22 C -0.06 -0.97 4.30 -12.76 -0.05 -1.02 16 23 H 0.15 1.46 8.14 -2.39 -0.02 1.44 16 24 C -0.06 -0.95 7.66 29.37 0.23 -0.72 16 25 C -0.14 -2.37 7.42 -20.08 -0.15 -2.52 16 26 C -0.11 -1.65 10.06 22.37 0.22 -1.42 16 27 C -0.12 -1.42 10.04 22.23 0.22 -1.20 16 28 C -0.13 -1.54 10.04 22.23 0.22 -1.32 16 29 C -0.10 -1.35 10.06 22.36 0.22 -1.12 16 30 C -0.14 -2.26 6.90 -20.08 -0.14 -2.40 16 31 H 0.04 0.82 8.14 -2.39 -0.02 0.81 16 32 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16 35 H 0.09 1.60 8.14 -2.38 -0.02 1.58 16 36 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.04 0.76 7.75 -2.39 -0.02 0.74 16 38 H 0.35 10.49 8.43 -89.69 -0.76 9.73 16 39 H 0.10 3.09 8.14 -2.39 -0.02 3.07 16 40 H 0.07 1.94 8.14 -2.38 -0.02 1.92 16 41 H 0.40 19.24 7.90 -92.71 -0.73 18.51 16 42 H 0.28 14.01 8.31 -92.71 -0.77 13.24 16 43 H 0.41 4.37 8.60 -92.71 -0.80 3.58 16 44 H 0.09 1.79 7.01 -2.39 -0.02 1.77 16 45 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 46 H 0.13 1.48 8.06 -2.91 -0.02 1.46 16 47 H 0.15 1.04 8.06 -2.91 -0.02 1.01 16 48 H 0.15 1.07 8.06 -2.91 -0.02 1.05 16 49 H 0.13 1.37 8.06 -2.91 -0.02 1.35 16 Total: -1.00 -74.06 412.97 -0.54 -74.60 By element: Atomic # 1 Polarization: 42.91 SS G_CDS: -1.30 Total: 41.62 kcal Atomic # 6 Polarization: 0.47 SS G_CDS: 5.35 Total: 5.81 kcal Atomic # 7 Polarization: -109.97 SS G_CDS: -6.52 Total: -116.49 kcal Atomic # 8 Polarization: -50.16 SS G_CDS: -0.09 Total: -50.26 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.73 kcal Total: -74.06 -0.54 -74.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268395351.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.923 kcal (2) G-P(sol) polarization free energy of solvation -74.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds